RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 FN3KQ9H479 309 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 A0A0G2JPF8 293 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 HNRNPCL3B7ZW38 293 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 LRRTM2O43300 516 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 UGDHO60701 494 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 HNRNPCL4P0DMR1 293 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 KDELR2P33947 212 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 EIF1AXP47813 144 aaKnown RBP18.29■□□□□ 0.52
UPF1-201ENST00000262803 SUN5Q8TC36 379 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 PDLIM7Q9NR12 457 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 GXYLT2A0PJZ3 443 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 GLOD5A6NK44 160 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 SEMA4FO95754 770 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 PAK4O96013 591 aaPredicted RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 MAGEA2P43356 314 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 S100A10P60903 97 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 TBPL1P62380 186 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 MZT1Q08AG7 82 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 GINS1Q14691 196 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 RHEBQ15382 184 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 MAMDC2Q7Z304 686 aaPredicted RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 LIX1LQ8IVB5 337 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 LNX2Q8N448 690 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.28■□□□□ 0.529e-6■■■□□ 15.9
UPF1-201ENST00000262803 RHBDF1Q96CC6 855 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 IL21RQ9HBE5 538 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 UCKL1Q9NWZ5 548 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 PRAMEF2O60811 474 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 VAMP1P23763 118 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 STK19P49842 368 aaPredicted RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 AFF1P51825 1210 aaKnown RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 FGL2Q14314 439 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 HSD17B12Q53GQ0 312 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 LPAR4Q99677 370 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 ZNF700Q9H0M5 742 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 GDE1Q9NZC3 331 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 CDC40O60508 579 aaKnown RBP eCLIP18.28■□□□□ 0.52
UPF1-201ENST00000262803 CCNOP22674 350 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 HOXA11P31270 313 aaPredicted RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 OGFRL1Q5TC84 451 aaPredicted RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 OR8J1Q8NGP2 316 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 TRIB2Q92519 343 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 PGAM5Q96HS1 289 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 TGM7Q96PF1 710 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 ACTR6Q9GZN1 396 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 SETD1AO15047 1707 aaKnown RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 PHRF1Q9P1Y6 1649 aaKnown RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 ZNF142P52746 1687 aaPredicted RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 SMIM30A4D0T7 59 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 GNAO1P09471 354 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 SLC6A8P48029 635 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 ZNF45Q02386 682 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 OR4D1Q15615 310 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 CBARPQ8N350 705 aaPredicted RBP18.28■□□□□ 0.52
UPF1-201ENST00000262803 PHOSPHO2Q8TCD6 241 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 SGIP1Q9BQI5 828 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 ZFP57Q9NU63 452 aa18.28■□□□□ 0.52
UPF1-201ENST00000262803 ZCWPW2A0A1B0GU75 182 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 C2orf92A0A1B0GVN3 265 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 DIRAS3O95661 229 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 SCGB1D2O95969 90 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 HMGCLP35914 325 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 PIGFQ07326 219 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 SLC14A2Q15849 920 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 ZNF423Q2M1K9 1284 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 OR6C4Q8NGE1 309 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 OR52B6Q8NGF0 335 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 OR5T2Q8NGG2 359 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 OR52P1PQ8NH57 321 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 MMP27Q9H306 513 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 SH2B3Q9UQQ2 575 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 A0A1B0GVT2 93 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 CCRL2O00421 344 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 C6P13671 934 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 RIDAP52758 137 aaKnown RBP18.27■□□□□ 0.52
UPF1-201ENST00000262803 LRP8Q14114 963 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 MEPEQ9NQ76 525 aaPredicted RBP18.27■□□□□ 0.52
UPF1-201ENST00000262803 GABRQQ9UN88 632 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 ST14Q9Y5Y6 855 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 PIAS3Q9Y6X2 628 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 MYH6P13533 1939 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 LPLP06858 475 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 UBE2NP61088 152 aaKnown RBP18.27■□□□□ 0.52
UPF1-201ENST00000262803 GNMTQ14749 295 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 FAM76BQ5HYJ3 339 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 ZNF675Q8TD23 568 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 POTEKPQ9BYX7 375 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 AP1M2Q9Y6Q5 423 aa18.27■□□□□ 0.52
UPF1-201ENST00000262803 AXIN1O15169 862 aa18.27■□□□□ 0.51
UPF1-201ENST00000262803 ZNF584Q8IVC4 421 aa18.27■□□□□ 0.51
UPF1-201ENST00000262803 LRRC20Q8TCA0 184 aa18.27■□□□□ 0.51
UPF1-201ENST00000262803 SH3YL1Q96HL8 342 aaPredicted RBP18.27■□□□□ 0.51
UPF1-201ENST00000262803 WACQ9BTA9 647 aa18.27■□□□□ 0.51
UPF1-201ENST00000262803 CSN2P05814 226 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 HNRNPA2B1P22626 353 aaKnown RBP18.26■□□□□ 0.51
UPF1-201ENST00000262803 SGCAQ16586 387 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 SPRED3Q2MJR0 410 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 TMEM236Q5W0B7 351 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 TCEAL8Q8IYN2 117 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 CCDC116Q8IYX3 515 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms