RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ZCCHC2Q9C0B9 1178 aaKnown RBP20.17■□□□□ 0.82
TRIM28-201ENST00000253024 OR52A5Q9H2C5 316 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 PLCXD1Q9NUJ7 323 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 FKBP14Q9NWM8 211 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 REV1Q9UBZ9 1251 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 SPIN1Q9Y657 262 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-201ENST00000253024 TTC36A6NLP5 189 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 CPSF4LA6NMK7 179 aaKnown RBP20.17■□□□□ 0.82
TRIM28-201ENST00000253024 CISD3P0C7P0 127 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 BSGP35613 385 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 UBE3AQ05086 875 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 LRIT3Q3SXY7 679 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 NDUFAF5Q5TEU4 345 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 PGBD2Q6P3X8 592 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 TMEM107Q6UX40 140 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 LINC01555Q8NAE3 123 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 SIMC1Q8NDZ2 872 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 OR8D1Q8WZ84 308 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 SLC6A17Q9H1V8 727 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 CAPN10Q9HC96 672 aa20.17■□□□□ 0.82
TRIM28-201ENST00000253024 SIRT3Q9NTG7 399 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-201ENST00000253024 PDZK1P1A8MUH7 402 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 MYL12BO14950 172 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 PAPLNO95428 1278 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 HOXB6P17509 224 aaKnown RBP20.16■□□□□ 0.82
TRIM28-201ENST00000253024 SDHBP21912 280 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 AVPR1BP47901 424 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 C21orf58P58505 322 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 SNAPC1Q16533 368 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF770Q6IQ21 691 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-201ENST00000253024 GANCQ8TET4 914 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 KAT2AQ92830 837 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 C1GALT1C1Q96EU7 318 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 BBS4Q96RK4 519 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 FNDC11Q9BVV2 318 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 RACGAP1Q9H0H5 632 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 SERGEFQ9UGK8 458 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 TRANK1O15050 2925 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 LRRK1Q38SD2 2015 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 PRNPP04156 253 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 MMP11P24347 488 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 CSNK2BP67870 215 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 C18orf63Q68DL7 685 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 GLCCI1Q86VQ1 547 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 KIAA1958Q8N8K9 716 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 OR4K5Q8NGD3 323 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 OR2L2Q8NH16 312 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 PDXPQ96GD0 296 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 BCL7BQ9BQE9 202 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 SLC30A2Q9BRI3 323 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 SPATA9Q9BWV2 254 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 C6orf106Q9H6K1 298 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-201ENST00000253024 DEC1Q9P2X7 70 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 C4orf51C9J302 202 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 HAT1O14929 419 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 OSMP13725 252 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 ETV5P41161 510 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 IL12RB1P42701 662 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 SLC15A1P46059 708 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 LIMS1P48059 325 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 ETV1P50549 477 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 SNRPNP63162 240 aaKnown RBP20.16■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF793Q6ZN11 406 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 RD3Q7Z3Z2 195 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 ZER1Q7Z7L7 766 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 NACC2Q96BF6 587 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 AIF1LQ9BQI0 150 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 GLIPR2Q9H4G4 154 aa20.16■□□□□ 0.82
TRIM28-201ENST00000253024 ERI3O43414 337 aaKnown RBP20.15■□□□□ 0.82
TRIM28-201ENST00000253024 NCR1O76036 304 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 LINC00271P0C7V0 271 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 P2RY2P41231 377 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 HNRNPA0Q13151 305 aaKnown RBP20.15■□□□□ 0.82
TRIM28-201ENST00000253024 HEPACAMQ14CZ8 416 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 PNCKQ6P2M8 343 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 MAPKAP1Q9BPZ7 522 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 SMURF1Q9HCE7 757 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 FBXL12Q9NXK8 326 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 PCDHGA4Q9Y5G9 962 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 SOX18P35713 384 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 ARMC4Q5T2S8 1044 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 OR4N5Q8IXE1 308 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 TMEM145Q8NBT3 493 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 KLHL6Q8WZ60 621 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 PSD2Q9BQI7 771 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 MS4A8Q9BY19 250 aa20.15■□□□□ 0.82
TRIM28-201ENST00000253024 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.14■□□□□ 0.82
TRIM28-201ENST00000253024 CAPN5O15484 640 aaPredicted RBP20.14■□□□□ 0.82
TRIM28-201ENST00000253024 NDUFS4O43181 175 aa20.14■□□□□ 0.82
TRIM28-201ENST00000253024 UGT2B10P36537 528 aa20.14■□□□□ 0.82
TRIM28-201ENST00000253024 GSTM5P46439 218 aa20.14■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF658BQ4V348 819 aaPredicted RBP20.14■□□□□ 0.82
TRIM28-201ENST00000253024 ZNF367Q7RTV3 350 aa20.14■□□□□ 0.82
TRIM28-201ENST00000253024 POP5Q969H6 163 aaKnown RBP20.14■□□□□ 0.82
TRIM28-201ENST00000253024 HHIPL1Q96JK4 782 aa20.14■□□□□ 0.82
TRIM28-201ENST00000253024 SYNPO2LQ9H987 977 aa20.14■□□□□ 0.82
TRIM28-201ENST00000253024 GPR55Q9Y2T6 319 aaPredicted RBP20.14■□□□□ 0.82
TRIM28-201ENST00000253024 SPTBP11277 2137 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 ALPK3Q96L96 1907 aa20.14■□□□□ 0.81
TRIM28-201ENST00000253024 CASP3P42574 277 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms