RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 TMEM169Q96HH4 297 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 PPM1MQ96MI6 270 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 SLC38A3Q99624 504 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 GABARAPL1Q9H0R8 117 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 GAREM1Q9H706 876 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 NT5DC2Q9H857 520 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 PLCXD1Q9NUJ7 323 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 VNN3Q9NY84 501 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 OR51B4Q9Y5P0 310 aa12.97□□□□□ -0.33
GABPB1-201ENST00000220429 GPR39O43194 453 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 FBP1P09467 338 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 ACSL1P33121 698 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 ZFP36L2P47974 494 aaKnown RBP12.96□□□□□ -0.33
GABPB1-201ENST00000220429 RIDAP52758 137 aaKnown RBP12.96□□□□□ -0.33
GABPB1-201ENST00000220429 CAMK2DQ13557 499 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 RAB33AQ14088 237 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 INO80DQ53TQ3 878 aaPredicted RBP12.96□□□□□ -0.33
GABPB1-201ENST00000220429 ZRANB3Q5FWF4 1079 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 ATXN7L2Q5T6C5 722 aaPredicted RBP12.96□□□□□ -0.33
GABPB1-201ENST00000220429 DLEU7Q6UYE1 221 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 SLC39A5Q6ZMH5 540 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 KRT74Q7RTS7 529 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 SLC44A2Q8IWA5 706 aaPredicted RBP12.96□□□□□ -0.33
GABPB1-201ENST00000220429 Q8N402 240 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 FBXO39Q8N4B4 442 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 SIDT2Q8NBJ9 832 aaKnown RBP12.96□□□□□ -0.33
GABPB1-201ENST00000220429 TWIST2Q8WVJ9 160 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 CCDC115Q96NT0 180 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 ERMAPQ96PL5 475 aaPredicted RBP12.96□□□□□ -0.33
GABPB1-201ENST00000220429 MGLLQ99685 303 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 MYOCQ99972 504 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 TUBB1Q9H4B7 451 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 PHF11Q9UIL8 331 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 PCDHGB7Q9Y5F8 929 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 PIKFYVEQ9Y2I7 2098 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 DOCK6Q96HP0 2047 aa12.96□□□□□ -0.33
GABPB1-201ENST00000220429 NPEPPSL1A6NEC2 478 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 ZNF729A6NN14 1252 aaPredicted RBP12.96□□□□□ -0.34
GABPB1-201ENST00000220429 GFRA2O00451 464 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 SCAMP1O15126 338 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 TO15178 435 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 PRAMEF1O95521 474 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 SERPINA1P01009 418 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 KCNJ5P48544 419 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 TTPAP49638 278 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 POLR2JP52435 117 aaKnown RBP12.96□□□□□ -0.34
GABPB1-201ENST00000220429 ERVK-25P63136 954 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 TXNDC8Q6A555 127 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 C3P1Q6ZMU1 363 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 KLHL36Q8N4N3 616 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 ARL14EPQ8N8R7 260 aaPredicted RBP12.96□□□□□ -0.34
GABPB1-201ENST00000220429 EXOSC8Q96B26 276 aaKnown RBP12.96□□□□□ -0.34
GABPB1-201ENST00000220429 EID2BQ96D98 161 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 ALG14Q96F25 216 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 ZNF558Q96NG5 402 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 CRB3Q9BUF7 120 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 SEMA4CQ9C0C4 833 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 MCOLN1Q9GZU1 580 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 PRMT8Q9NR22 394 aaPredicted RBP12.96□□□□□ -0.34
GABPB1-201ENST00000220429 GPR83Q9NYM4 423 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 MYEF2Q9P2K5 600 aaKnown RBP12.96□□□□□ -0.34
GABPB1-201ENST00000220429 ZNF490Q9ULM2 529 aaPredicted RBP12.96□□□□□ -0.34
GABPB1-201ENST00000220429 PCDHB9Q9Y5E1 797 aa12.96□□□□□ -0.34
GABPB1-201ENST00000220429 SCN8AQ9UQD0 1980 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 CHURC1-FNTBB4DL54 471 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 GTPBP1O00178 669 aaKnown RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 DHFRP00374 187 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 CNPP09543 421 aaKnown RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 APEX1P27695 318 aaKnown RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 NNMTP40261 264 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 RFC3P40938 356 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 VEGFBP49765 207 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 RHOAP61586 193 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 LCP2Q13094 533 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 SERTAD2Q14140 314 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 SF3A2Q15428 464 aaKnown RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 MED22Q15528 200 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 CNKSR3Q6P9H4 555 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 SHFQ7M4L6 423 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 TRMT11Q7Z4G4 463 aaKnown RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 NKAPQ8N5F7 415 aaKnown RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 ELP5Q8TE02 316 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 FAM162AQ96A26 154 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 ZNF583Q96ND8 569 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 BBS4Q96RK4 519 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 CMSS1Q9BQ75 279 aaKnown RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 H2AFJQ9BTM1 129 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 ANKRD19PQ9H560 264 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 EVA1AQ9H8M9 152 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 IL21Q9HBE4 155 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 SEMA4BQ9NPR2 832 aaPredicted RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 SAMHD1Q9Y3Z3 626 aaKnown RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 INSL5Q9Y5Q6 135 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 LTBP2Q14767 1821 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 PDE4DIPQ5VU43 2346 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 A0A1B0GV90 55 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 NCF1BA6NI72 391 aaPredicted RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 NCF1CA8MVU1 366 aaPredicted RBP12.95□□□□□ -0.34
GABPB1-201ENST00000220429 TEX46H3BTG2 121 aa12.95□□□□□ -0.34
GABPB1-201ENST00000220429 H7C0S8 307 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms