RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 NUP188Q5SRE5 1749 aa22.8■■□□□ 1.24
CLN3-263ENST00000637871 SEC24BO95487 1268 aa22.79■■□□□ 1.24
CLN3-263ENST00000637871 ITPK1Q13572 414 aa22.79■■□□□ 1.24
CLN3-263ENST00000637871 TAF1LQ8IZX4 1826 aa22.79■■□□□ 1.24
CLN3-263ENST00000637871 MEIS3Q99687 375 aa22.79■■□□□ 1.24
CLN3-263ENST00000637871 ATP6V1AP38606 617 aa22.78■■□□□ 1.24
CLN3-263ENST00000637871 SLC4A10Q6U841 1118 aa22.78■■□□□ 1.24
CLN3-263ENST00000637871 HEG1Q9ULI3 1381 aa22.77■■□□□ 1.23
CLN3-263ENST00000637871 COL5A3P25940 1745 aaPredicted RBP22.76■■□□□ 1.23
CLN3-263ENST00000637871 FMNL2Q96PY5 1086 aa22.76■■□□□ 1.23
CLN3-263ENST00000637871 SOCS7O14512 581 aa22.75■■□□□ 1.23
CLN3-263ENST00000637871 DNAJC10Q8IXB1 793 aa22.75■■□□□ 1.23
CLN3-263ENST00000637871 HDAC5Q9UQL6 1122 aa22.75■■□□□ 1.23
CLN3-263ENST00000637871 N4BP2Q86UW6 1770 aaPredicted RBP22.75■■□□□ 1.23
CLN3-263ENST00000637871 LINC00116Q8NCU8 138 aa22.75■■□□□ 1.23
CLN3-263ENST00000637871 C22orf23Q9BZE7 217 aa22.75■■□□□ 1.23
CLN3-263ENST00000637871 ZNF831Q5JPB2 1677 aa22.74■■□□□ 1.23
CLN3-263ENST00000637871 CICQ96RK0 1608 aaPredicted RBP22.74■■□□□ 1.23
CLN3-263ENST00000637871 DBF4Q9UBU7 674 aaPredicted RBP22.74■■□□□ 1.23
CLN3-263ENST00000637871 F6X3S4 739 aa22.73■■□□□ 1.23
CLN3-263ENST00000637871 LAMB4A4D0S4 1761 aa22.73■■□□□ 1.23
CLN3-263ENST00000637871 ATP8B2P98198 1209 aa22.72■■□□□ 1.23
CLN3-263ENST00000637871 RTL5Q5HYW3 569 aaPredicted RBP22.72■■□□□ 1.23
CLN3-263ENST00000637871 SLC27A3Q5K4L6 730 aa22.72■■□□□ 1.23
CLN3-263ENST00000637871 C4BP0C0L5 1744 aa22.72■■□□□ 1.23
CLN3-263ENST00000637871 PLEKHM2Q8IWE5 1019 aa22.71■■□□□ 1.23
CLN3-263ENST00000637871 ANO8Q9HCE9 1232 aaPredicted RBP22.71■■□□□ 1.23
CLN3-263ENST00000637871 MYH14Q7Z406 1995 aaKnown RBP22.7■■□□□ 1.22
CLN3-263ENST00000637871 GIGYF1O75420 1035 aaPredicted RBP22.7■■□□□ 1.22
CLN3-263ENST00000637871 RBM25P49756 843 aaKnown RBP22.7■■□□□ 1.22
CLN3-263ENST00000637871 SMIM5Q71RC9 77 aa22.7■■□□□ 1.22
CLN3-263ENST00000637871 NECTIN2Q92692 538 aa22.7■■□□□ 1.22
CLN3-263ENST00000637871 SRCIN1Q9C0H9 1055 aa22.7■■□□□ 1.22
CLN3-263ENST00000637871 USP16Q9Y5T5 823 aa22.7■■□□□ 1.22
CLN3-263ENST00000637871 CDC45O75419 566 aa22.69■■□□□ 1.22
CLN3-263ENST00000637871 SNRPA1P09661 255 aaKnown RBP22.69■■□□□ 1.22
CLN3-263ENST00000637871 PIP4K2AP48426 406 aaPredicted RBP22.69■■□□□ 1.22
CLN3-263ENST00000637871 ZNF827Q17R98 1081 aa22.69■■□□□ 1.22
CLN3-263ENST00000637871 TUBGCP6Q96RT7 1819 aa22.69■■□□□ 1.22
CLN3-263ENST00000637871 MFAP1P55081 439 aaKnown RBP22.68■■□□□ 1.22
CLN3-263ENST00000637871 VSIG10Q8N0Z9 540 aa22.68■■□□□ 1.22
CLN3-263ENST00000637871 OSBPL3Q9H4L5 887 aa22.68■■□□□ 1.22
CLN3-263ENST00000637871 IBTKQ9P2D0 1353 aaPredicted RBP22.68■■□□□ 1.22
CLN3-263ENST00000637871 UBTFL1P0CB47 393 aaPredicted RBP22.68■■□□□ 1.22
CLN3-263ENST00000637871 TTC22Q5TAA0 569 aa22.68■■□□□ 1.22
CLN3-263ENST00000637871 HYPKQ9NX55 129 aa22.68■■□□□ 1.22
CLN3-263ENST00000637871 CYP19A1P11511 503 aaPredicted RBP22.67■■□□□ 1.22
CLN3-263ENST00000637871 EIF2S2P20042 333 aaKnown RBP22.67■■□□□ 1.22
CLN3-263ENST00000637871 AMIGO3Q86WK7 504 aa22.67■■□□□ 1.22
CLN3-263ENST00000637871 DNAAF4Q8WXU2 420 aa22.67■■□□□ 1.22
CLN3-263ENST00000637871 ALDH1L1O75891 902 aa22.66■■□□□ 1.22
CLN3-263ENST00000637871 CRKLP46109 303 aaKnown RBP22.66■■□□□ 1.22
CLN3-263ENST00000637871 CASC1Q6TDU7 716 aa22.65■■□□□ 1.22
CLN3-263ENST00000637871 USP44Q9H0E7 712 aa22.65■■□□□ 1.22
CLN3-263ENST00000637871 CHPF2Q9P2E5 772 aa22.65■■□□□ 1.22
CLN3-263ENST00000637871 A1BGP04217 495 aa22.64■■□□□ 1.22
CLN3-263ENST00000637871 ZBTB1Q9Y2K1 713 aa22.64■■□□□ 1.22
CLN3-263ENST00000637871 RAB11FIP3O75154 756 aa22.64■■□□□ 1.21
CLN3-263ENST00000637871 DDX58O95786 925 aaKnown RBP22.64■■□□□ 1.21
CLN3-263ENST00000637871 PHAXQ9H814 394 aaKnown RBP22.64■■□□□ 1.21
CLN3-263ENST00000637871 UBR3Q6ZT12 1888 aa22.63■■□□□ 1.21
CLN3-263ENST00000637871 INTS5Q6P9B9 1019 aaKnown RBP22.63■■□□□ 1.21
CLN3-263ENST00000637871 AKT1S1Q96B36 256 aa22.63■■□□□ 1.21
CLN3-263ENST00000637871 GNPATO15228 680 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 STARD3NLO95772 234 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 HSP90AB4PQ58FF6 505 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 BEND3Q5T5X7 828 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 TBC1D9Q6ZT07 1266 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 SSH3Q8TE77 659 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 AK7Q96M32 723 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 LRRCC1Q9C099 1032 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 DDX21Q9NR30 783 aaKnown RBP eCLIP22.62■■□□□ 1.21
CLN3-263ENST00000637871 CCDC87Q9NVE4 849 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 CNTNAP4Q9C0A0 1308 aa22.62■■□□□ 1.21
CLN3-263ENST00000637871 ANXA1P04083 346 aa22.61■■□□□ 1.21
CLN3-263ENST00000637871 KSR2Q6VAB6 950 aa22.61■■□□□ 1.21
CLN3-263ENST00000637871 PHF14O94880 888 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 NBR1Q14596 966 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 SNX21Q969T3 373 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 TEX13AQ9BXU3 409 aaPredicted RBP22.6■■□□□ 1.21
CLN3-263ENST00000637871 ZNF330Q9Y3S2 320 aaPredicted RBP22.6■■□□□ 1.21
CLN3-263ENST00000637871 AOX1Q06278 1338 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 PI4KAP2A4QPH2 592 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 NBPF26B4DH59 902 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 SLC4A3P48751 1232 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 PROSER3Q2NL68 480 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 NBPF14Q5TI25 921 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 NBPF10Q6P3W6 841 aaKnown RBP22.6■■□□□ 1.21
CLN3-263ENST00000637871 NBPF15Q8N660 670 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 PI4KAP1Q8N8J0 262 aa22.6■■□□□ 1.21
CLN3-263ENST00000637871 SLC15A2Q16348 729 aa22.59■■□□□ 1.21
CLN3-263ENST00000637871 STK32BQ9NY57 414 aa22.59■■□□□ 1.21
CLN3-263ENST00000637871 LRRFIP2Q9Y608 721 aaKnown RBP22.59■■□□□ 1.21
CLN3-263ENST00000637871 MYL6BP14649 208 aa22.58■■□□□ 1.21
CLN3-263ENST00000637871 GSPT1P15170 499 aaKnown RBP22.58■■□□□ 1.21
CLN3-263ENST00000637871 TBC1D2Q9BYX2 928 aa22.58■■□□□ 1.21
CLN3-263ENST00000637871 TFCP2L1Q9NZI6 479 aa22.58■■□□□ 1.21
CLN3-263ENST00000637871 C4AP0C0L4 1744 aa22.58■■□□□ 1.2
CLN3-263ENST00000637871 POLA2Q14181 598 aa22.57■■□□□ 1.2
CLN3-263ENST00000637871 PSDA5PKW4 1024 aaPredicted RBP22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms