RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 SLU7O95391 586 aaKnown RBP8.1□□□□□ -1.11
SCN1A-213ENST00000636759 CT47B1P0C2W7 299 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-213ENST00000636759 FBXO18Q8NFZ0 1043 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 FAM212AQ96EL1 285 aa8.1□□□□□ -1.11
SCN1A-213ENST00000636759 RIMS1Q86UR5 1692 aaKnown RBP8.1□□□□□ -1.11
SCN1A-213ENST00000636759 CPSF1Q10570 1443 aaKnown RBP8.09□□□□□ -1.11
SCN1A-213ENST00000636759 ADAMTS13Q76LX8 1427 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 USP54Q70EL1 1684 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 ZKSCAN2Q63HK3 967 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 DZIP1LQ8IYY4 767 aaKnown RBP8.09□□□□□ -1.11
SCN1A-213ENST00000636759 ZGPATQ8N5A5 531 aaKnown RBP8.09□□□□□ -1.11
SCN1A-213ENST00000636759 ZBTB40Q9NUA8 1239 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 METP08581 1390 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 RGS12O14924 1447 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 TRIM27P14373 513 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 LMAN1P49257 510 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 SEMA3FQ13275 785 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 PTPN14Q15678 1187 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 ZRSR1Q15695 479 aaKnown RBP8.09□□□□□ -1.11
SCN1A-213ENST00000636759 FOXD4L6Q3SYB3 417 aaPredicted RBP8.09□□□□□ -1.11
SCN1A-213ENST00000636759 FOXD4L3Q6VB84 417 aaPredicted RBP8.09□□□□□ -1.11
SCN1A-213ENST00000636759 ITPRIPQ8IWB1 547 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 CHAMP1Q96JM3 812 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 TMEM2Q9UHN6 1383 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 TBC1D9Q6ZT07 1266 aa8.09□□□□□ -1.11
SCN1A-213ENST00000636759 XRN1Q8IZH2 1706 aaKnown RBP8.09□□□□□ -1.12
SCN1A-213ENST00000636759 CCDC196A0A1B0GTZ2 297 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 KIF2AO00139 706 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-213ENST00000636759 PPP1R12AO14974 1030 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-213ENST00000636759 CCDC186Q7Z3E2 898 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 MORC1Q86VD1 984 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 DNAAF4Q8WXU2 420 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 RAD50Q92878 1312 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 IRF6O14896 467 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 CDC45O75419 566 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 PNMA6AP0CW24 399 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-213ENST00000636759 BIRC2Q13490 618 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 SMARCE1Q969G3 411 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 DDX19BQ9UMR2 479 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 FAM208AQ9UK61 1670 aaKnown RBP8.08□□□□□ -1.12
SCN1A-213ENST00000636759 H0YHG0 523 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 USP8P40818 1118 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 SARNPP82979 210 aaKnown RBP8.08□□□□□ -1.12
SCN1A-213ENST00000636759 NEUROD2Q15784 382 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 PACS2Q86VP3 889 aa8.08□□□□□ -1.12
SCN1A-213ENST00000636759 DIP2AQ14689 1571 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 CCDC171Q6TFL3 1326 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 MMS22LQ6ZRQ5 1243 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 FILIP1Q7Z7B0 1213 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 SSH1Q8WYL5 1049 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 SGSM3Q96HU1 749 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 CDK12Q9NYV4 1490 aaPredicted RBP8.07□□□□□ -1.12
SCN1A-213ENST00000636759 PLEKHG1Q9ULL1 1385 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 FYB1O15117 783 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 TMPOP42166 694 aaKnown RBP8.07□□□□□ -1.12
SCN1A-213ENST00000636759 MNAT1P51948 309 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 SWT1Q5T5J6 900 aaKnown RBP8.07□□□□□ -1.12
SCN1A-213ENST00000636759 CHD1LQ86WJ1 897 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 CDK19Q9BWU1 502 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 TRDNQ13061 729 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 SUGP1Q8IWZ8 645 aaKnown RBP8.07□□□□□ -1.12
SCN1A-213ENST00000636759 TSR2Q969E8 191 aaKnown RBP8.07□□□□□ -1.12
SCN1A-213ENST00000636759 ZBTB12Q9Y330 459 aaPredicted RBP8.07□□□□□ -1.12
SCN1A-213ENST00000636759 ZDHHC9Q9Y397 364 aa8.07□□□□□ -1.12
SCN1A-213ENST00000636759 CRYBG1Q9Y4K1 1723 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 TPM1P09493 284 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 MX1P20591 662 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 ST5P78524 1137 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 CALR3Q96L12 384 aaKnown RBP8.06□□□□□ -1.12
SCN1A-213ENST00000636759 CEP89Q96ST8 783 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 GDPD2Q9HCC8 539 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 ATG3Q9NT62 314 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 SH3BP1Q9Y3L3 701 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 PLEKHG2Q9H7P9 1386 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 PTPRCP08575 1304 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 MPHOSPH10O00566 681 aaKnown RBP8.06□□□□□ -1.12
SCN1A-213ENST00000636759 GSCP56915 257 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-213ENST00000636759 SETQ01105 290 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-213ENST00000636759 ANKRD45Q5TZF3 282 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 NFATC2IPQ8NCF5 419 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 GIMAP7Q8NHV1 300 aa8.06□□□□□ -1.12
SCN1A-213ENST00000636759 ZNF142P52746 1687 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-213ENST00000636759 LIG1P18858 919 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 OAS2P29728 719 aaKnown RBP8.05□□□□□ -1.12
SCN1A-213ENST00000636759 ACTN2P35609 894 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 PLA2G4AP47712 749 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 CLCN6P51797 869 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 LRMPQ12912 555 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 TTLL5Q6EMB2 1281 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 TRIM5Q9C035 493 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 FHOD1Q9Y613 1164 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 MINK1Q8N4C8 1332 aaPredicted RBP8.05□□□□□ -1.12
SCN1A-213ENST00000636759 NUCB1Q02818 461 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 CASC1Q6TDU7 716 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 SIRT2Q8IXJ6 389 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 EIF3CLB5ME19 914 aaKnown RBP8.05□□□□□ -1.12
SCN1A-213ENST00000636759 KIF3CO14782 793 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 CCDC192P0DO97 292 aa8.05□□□□□ -1.12
SCN1A-213ENST00000636759 EXOSC9Q06265 439 aaKnown RBP8.05□□□□□ -1.12
SCN1A-213ENST00000636759 NBPF9Q3BBW0 867 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms