RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 RGPD4Q7Z3J3 1758 aa13.2□□□□□ -0.3
CLN3-248ENST00000636355 NBPF26B4DH59 902 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 GRM8O00222 908 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 RGL2O15211 777 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 MYL6BP14649 208 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 NBPF14Q5TI25 921 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 NBPF10Q6P3W6 841 aaKnown RBP13.19□□□□□ -0.3
CLN3-248ENST00000636355 NBPF15Q8N660 670 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 C1orf115Q9H7X2 142 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 TSHZ2Q9NRE2 1034 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 MYH3P11055 1940 aa13.19□□□□□ -0.3
CLN3-248ENST00000636355 CYP19A1P11511 503 aaPredicted RBP13.18□□□□□ -0.3
CLN3-248ENST00000636355 RXRBP28702 533 aa13.18□□□□□ -0.3
CLN3-248ENST00000636355 CHD1LQ86WJ1 897 aa13.18□□□□□ -0.3
CLN3-248ENST00000636355 SYTL4Q96C24 671 aaPredicted RBP13.18□□□□□ -0.3
CLN3-248ENST00000636355 MYH14Q7Z406 1995 aaKnown RBP13.18□□□□□ -0.3
CLN3-248ENST00000636355 NEURL1BA8MQ27 555 aa13.17□□□□□ -0.3
CLN3-248ENST00000636355 IL6STP40189 918 aaPredicted RBP13.17□□□□□ -0.3
CLN3-248ENST00000636355 KIF6Q6ZMV9 814 aa13.17□□□□□ -0.3
CLN3-248ENST00000636355 DNAJC10Q8IXB1 793 aa13.17□□□□□ -0.3
CLN3-248ENST00000636355 SSH3Q8TE77 659 aa13.17□□□□□ -0.3
CLN3-248ENST00000636355 RBM42Q9BTD8 480 aaKnown RBP13.17□□□□□ -0.3
CLN3-248ENST00000636355 C9orf78Q9NZ63 289 aaPredicted RBP13.17□□□□□ -0.3
CLN3-248ENST00000636355 LRRFIP2Q9Y608 721 aaKnown RBP13.17□□□□□ -0.3
CLN3-248ENST00000636355 TUBGCP6Q96RT7 1819 aa13.17□□□□□ -0.3
CLN3-248ENST00000636355 LOC102724428A0A0B4J2F2 783 aa13.16□□□□□ -0.3
CLN3-248ENST00000636355 HMGB2P26583 209 aaKnown RBP13.16□□□□□ -0.3
CLN3-248ENST00000636355 SIK1P57059 783 aa13.16□□□□□ -0.3
CLN3-248ENST00000636355 ATP8B2P98198 1209 aa13.16□□□□□ -0.3
CLN3-248ENST00000636355 GCKRQ14397 625 aa13.16□□□□□ -0.3
CLN3-248ENST00000636355 HSP90AB4PQ58FF6 505 aa13.16□□□□□ -0.3
CLN3-248ENST00000636355 HSP90AB3PQ58FF7 597 aa13.16□□□□□ -0.3
CLN3-248ENST00000636355 ZBTB47Q9UFB7 747 aaPredicted RBP13.16□□□□□ -0.3
CLN3-248ENST00000636355 A0A0G2JS52 829 aa13.15□□□□□ -0.3
CLN3-248ENST00000636355 IGKV5-2P06315 115 aa13.15□□□□□ -0.3
CLN3-248ENST00000636355 MYT1Q01538 1121 aa13.15□□□□□ -0.3
CLN3-248ENST00000636355 AIMP1Q12904 312 aaKnown RBP13.15□□□□□ -0.3
CLN3-248ENST00000636355 TRIM28Q13263 835 aaKnown RBP13.15□□□□□ -0.3
CLN3-248ENST00000636355 POLA2Q14181 598 aa13.15□□□□□ -0.3
CLN3-248ENST00000636355 CCDC191Q8NCU4 936 aa13.15□□□□□ -0.3
CLN3-248ENST00000636355 MAP3K15Q6ZN16 1313 aa13.14□□□□□ -0.31
CLN3-248ENST00000636355 CNTNAP4Q9C0A0 1308 aa13.14□□□□□ -0.31
CLN3-248ENST00000636355 ERVV-1B6SEH8 477 aa13.14□□□□□ -0.31
CLN3-248ENST00000636355 A1BGP04217 495 aa13.14□□□□□ -0.31
CLN3-248ENST00000636355 NBPF7P0C2Y1 421 aaPredicted RBP13.14□□□□□ -0.31
CLN3-248ENST00000636355 RGS3P49796 1198 aa13.14□□□□□ -0.31
CLN3-248ENST00000636355 CWF19L2Q2TBE0 894 aaKnown RBP13.14□□□□□ -0.31
CLN3-248ENST00000636355 FAM161AQ3B820 660 aa13.14□□□□□ -0.31
CLN3-248ENST00000636355 SLC4A9Q96Q91 983 aa13.14□□□□□ -0.31
CLN3-248ENST00000636355 CCDC87Q9NVE4 849 aa13.14□□□□□ -0.31
CLN3-248ENST00000636355 COL24A1Q17RW2 1714 aa13.13□□□□□ -0.31
CLN3-248ENST00000636355 RAB11FIP3O75154 756 aa13.13□□□□□ -0.31
CLN3-248ENST00000636355 SEPT12Q8IYM1 358 aa13.13□□□□□ -0.31
CLN3-248ENST00000636355 MYD88Q99836 296 aa13.13□□□□□ -0.31
CLN3-248ENST00000636355 BACH2Q9BYV9 841 aa13.13□□□□□ -0.31
CLN3-248ENST00000636355 QTRT2Q9H974 415 aaKnown RBP13.13□□□□□ -0.31
CLN3-248ENST00000636355 CWC25Q9NXE8 425 aaPredicted RBP13.13□□□□□ -0.31
CLN3-248ENST00000636355 C4AP0C0L4 1744 aa13.13□□□□□ -0.31
CLN3-248ENST00000636355 C4BP0C0L5 1744 aa13.13□□□□□ -0.31
CLN3-248ENST00000636355 RABL6Q3YEC7 729 aaPredicted RBP13.12□□□□□ -0.31
CLN3-248ENST00000636355 BMP2KLQ5H9B9 411 aa13.12□□□□□ -0.31
CLN3-248ENST00000636355 GIGYF2Q6Y7W6 1299 aaKnown RBP13.12□□□□□ -0.31
CLN3-248ENST00000636355 NPM2Q86SE8 214 aaKnown RBP13.12□□□□□ -0.31
CLN3-248ENST00000636355 ERC1Q8IUD2 1116 aa13.12□□□□□ -0.31
CLN3-248ENST00000636355 ACSBG1Q96GR2 724 aa13.12□□□□□ -0.31
CLN3-248ENST00000636355 ZBTB1Q9Y2K1 713 aa13.12□□□□□ -0.31
CLN3-248ENST00000636355 AOX1Q06278 1338 aa13.12□□□□□ -0.31
CLN3-248ENST00000636355 PNMA6EA0A0J9YXQ4 647 aa13.11□□□□□ -0.31
CLN3-248ENST00000636355 EIF5BO60841 1220 aaKnown RBP13.11□□□□□ -0.31
CLN3-248ENST00000636355 PDE4AP27815 886 aa13.11□□□□□ -0.31
CLN3-248ENST00000636355 ATP6V1AP38606 617 aa13.11□□□□□ -0.31
CLN3-248ENST00000636355 CRKLP46109 303 aaKnown RBP13.11□□□□□ -0.31
CLN3-248ENST00000636355 EIF5P55010 431 aaKnown RBP13.11□□□□□ -0.31
CLN3-248ENST00000636355 RBM6P78332 1123 aaKnown RBP13.11□□□□□ -0.31
CLN3-248ENST00000636355 TCIRG1Q13488 830 aa13.11□□□□□ -0.31
CLN3-248ENST00000636355 ANKRD45Q5TZF3 282 aa13.11□□□□□ -0.31
CLN3-248ENST00000636355 TTLL7Q6ZT98 887 aa13.11□□□□□ -0.31
CLN3-248ENST00000636355 PPP1R42Q7Z4L9 355 aa13.11□□□□□ -0.31
CLN3-248ENST00000636355 ISCA1Q9BUE6 129 aa13.11□□□□□ -0.31
CLN3-248ENST00000636355 NOP58Q9Y2X3 529 aaKnown RBP13.11□□□□□ -0.31
CLN3-248ENST00000636355 LRP5O75197 1615 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 AK9Q5TCS8 1911 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 A0A087WZG4 1122 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 SRGAP3O43295 1099 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 RC3H1Q5TC82 1133 aaKnown RBP13.1□□□□□ -0.31
CLN3-248ENST00000636355 FAM196AQ6ZSG2 479 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 LRRCC1Q9C099 1032 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 LNPKQ9C0E8 428 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 BCL11BQ9C0K0 894 aaPredicted RBP13.1□□□□□ -0.31
CLN3-248ENST00000636355 TNS1Q9HBL0 1735 aaKnown RBP13.1□□□□□ -0.31
CLN3-248ENST00000636355 UBR3Q6ZT12 1888 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 CDHR2Q9BYE9 1310 aa13.1□□□□□ -0.31
CLN3-248ENST00000636355 H7C1W4 665 aa13.09□□□□□ -0.31
CLN3-248ENST00000636355 KCNQ2O43526 872 aa13.09□□□□□ -0.31
CLN3-248ENST00000636355 PIP4K2AP48426 406 aaPredicted RBP13.09□□□□□ -0.31
CLN3-248ENST00000636355 CASP7P55210 303 aa13.09□□□□□ -0.31
CLN3-248ENST00000636355 C8orf34Q49A92 452 aa13.09□□□□□ -0.31
CLN3-248ENST00000636355 INTS5Q6P9B9 1019 aaKnown RBP13.09□□□□□ -0.31
CLN3-248ENST00000636355 PCCAP05165 728 aaPredicted RBP13.08□□□□□ -0.32
CLN3-248ENST00000636355 ITPK1Q13572 414 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms