RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	USP25	Q9UHP3	1055 aa		12.87	□□□□□ -0.35
CHD2-223	ENST00000636306	PXDNL	A1KZ92	1463 aa		12.87	□□□□□ -0.35
CHD2-223	ENST00000636306	ZBTB7B	O15156	539 aa	Predicted RBP	12.86	□□□□□ -0.35
CHD2-223	ENST00000636306	CYP2C19	P33261	490 aa		12.86	□□□□□ -0.35
CHD2-223	ENST00000636306	KDM3B	Q7LBC6	1761 aa		12.86	□□□□□ -0.35
CHD2-223	ENST00000636306	PLEKHG2	Q9H7P9	1386 aa		12.86	□□□□□ -0.35
CHD2-223	ENST00000636306	CDC45	O75419	566 aa		12.86	□□□□□ -0.35
CHD2-223	ENST00000636306	SLFNL1	Q499Z3	407 aa		12.86	□□□□□ -0.35
CHD2-223	ENST00000636306	CHD1L	Q86WJ1	897 aa		12.86	□□□□□ -0.35
CHD2-223	ENST00000636306	HDAC5	Q9UQL6	1122 aa		12.86	□□□□□ -0.35
CHD2-223	ENST00000636306	TBC1D9	Q6ZT07	1266 aa		12.85	□□□□□ -0.35
CHD2-223	ENST00000636306	RBM42	Q9BTD8	480 aa	Known RBP	12.85	□□□□□ -0.35
CHD2-223	ENST00000636306	ZDHHC9	Q9Y397	364 aa		12.85	□□□□□ -0.35
CHD2-223	ENST00000636306	RAD50	Q92878	1312 aa		12.85	□□□□□ -0.35
CHD2-223	ENST00000636306	MSH6	P52701	1360 aa		12.85	□□□□□ -0.35
CHD2-223	ENST00000636306	RGS12	O14924	1447 aa		12.85	□□□□□ -0.35
CHD2-223	ENST00000636306	KDM4A	O75164	1064 aa		12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	ATF3	P18847	181 aa		12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	TNNT3	P45378	269 aa	Predicted RBP	12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	CCT4	P50991	539 aa	Known RBP	12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	AMOT	Q4VCS5	1084 aa		12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	MUM1L1	Q5H9M0	696 aa		12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	RNF20	Q5VTR2	975 aa		12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	CCDC30	Q5VVM6	783 aa		12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	BRMS1	Q9HCU9	246 aa		12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	NOP2	P46087	812 aa	Known RBP	12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	C17orf53	Q8N3J3	647 aa	Predicted RBP	12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	LTV1	Q96GA3	475 aa	Predicted RBP	12.84	□□□□□ -0.35
CHD2-223	ENST00000636306	RGPD2	P0DJD1	1756 aa		12.83	□□□□□ -0.36
CHD2-223	ENST00000636306	ST18	O60284	1047 aa		12.83	□□□□□ -0.36
CHD2-223	ENST00000636306	TAF7	Q15545	349 aa	Predicted RBP	12.83	□□□□□ -0.36
CHD2-223	ENST00000636306	PLEKHO1	Q53GL0	409 aa	Predicted RBP	12.83	□□□□□ -0.36
CHD2-223	ENST00000636306	KIF1BP	Q96EK5	621 aa		12.83	□□□□□ -0.36
CHD2-223	ENST00000636306	RASSF4	Q9H2L5	321 aa		12.83	□□□□□ -0.36
CHD2-223	ENST00000636306	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.83	□□□□□ -0.36
CHD2-223	ENST00000636306	AK9	Q5TCS8	1911 aa		12.83	□□□□□ -0.36
CHD2-223	ENST00000636306	FOXO3	O43524	673 aa		12.82	□□□□□ -0.36
CHD2-223	ENST00000636306	HOXB7	P09629	217 aa		12.82	□□□□□ -0.36
CHD2-223	ENST00000636306	HNRNPH2	P55795	449 aa	Known RBP	12.82	□□□□□ -0.36
CHD2-223	ENST00000636306	KRT28	Q7Z3Y7	464 aa		12.82	□□□□□ -0.36
CHD2-223	ENST00000636306	CERS3	Q8IU89	383 aa		12.82	□□□□□ -0.36
CHD2-223	ENST00000636306	RPAP2	Q8IXW5	612 aa	Predicted RBP	12.82	□□□□□ -0.36
CHD2-223	ENST00000636306	CEMIP	Q8WUJ3	1361 aa		12.82	□□□□□ -0.36
CHD2-223	ENST00000636306	STRCP1	A6NGW2	1772 aa		12.82	□□□□□ -0.36
CHD2-223	ENST00000636306	HMMR	O75330	724 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	GC	P02774	474 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	ARHGEF25	Q86VW2	580 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	PYCARD	Q9ULZ3	195 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	TMEM94	Q12767	1356 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	ZBTB7C	A1YPR0	619 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	GTF2A1	P52655	376 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	AKAP4	Q5JQC9	854 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	CCDC183	Q5T5S1	534 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	CADPS2	Q86UW7	1296 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	TXLNB	Q8N3L3	684 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	CCDC112	Q8NEF3	446 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	ORAI2	Q96SN7	254 aa		12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	MYCBP	Q99417	103 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	NOL10	Q9BSC4	688 aa	Known RBP	12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD2-223	ENST00000636306	NPHP3	Q7Z494	1330 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	ERICH4	A6NGS2	130 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	BRD1	O95696	1058 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	SLC4A2	P04920	1241 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	RAD51AP2	Q09MP3	1159 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	PKP1	Q13835	747 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	BMS1	Q14692	1282 aa	Known RBP	12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	KCNF1	Q9H3M0	494 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	TNS3	Q68CZ2	1445 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	ATP10D	Q9P241	1426 aa		12.8	□□□□□ -0.36
CHD2-223	ENST00000636306	ADAMTS7	Q9UKP4	1686 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	C1orf141	Q5JVX7	400 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	ANKRD44	Q8N8A2	993 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	RBM33	Q96EV2	1170 aa	Known RBP	12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	NCAPG	Q9BPX3	1015 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	APP	P05067	770 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	ICE2	Q659A1	982 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	LMOD2	Q6P5Q4	547 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	TMEM87A	Q8NBN3	555 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	LNPK	Q9C0E8	428 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	RSPH14	Q9UHP6	348 aa		12.79	□□□□□ -0.36
CHD2-223	ENST00000636306	CRYBG1	Q9Y4K1	1723 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	SIPA1L3	O60292	1781 aa	Predicted RBP	12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	SOCS7	O14512	581 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	DHX16	O60231	1041 aa	Known RBP	12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	GNAI3	P08754	354 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	MCM2	P49736	904 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	TEF	Q10587	303 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	KRT24	Q2M2I5	525 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	TEX35	Q5T0J7	233 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	ANKRD45	Q5TZF3	282 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	ZNF530	Q6P9A1	599 aa	Predicted RBP	12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	ANKRD24	Q8TF21	1146 aa		12.78	□□□□□ -0.36
CHD2-223	ENST00000636306	CASQ1	P31415	396 aa		12.77	□□□□□ -0.36
CHD2-223	ENST00000636306	NBPF6	Q5VWK0	638 aa		12.77	□□□□□ -0.36
CHD2-223	ENST00000636306	NBPF4	Q96M43	638 aa		12.77	□□□□□ -0.36
CHD2-223	ENST00000636306	USP26	Q9BXU7	913 aa		12.77	□□□□□ -0.36
CHD2-223	ENST00000636306	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.77	□□□□□ -0.36
CHD2-223	ENST00000636306	RGPD5	Q99666	1765 aa		12.77	□□□□□ -0.37

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