RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 TPCN2Q8NHX9 752 aa7.57□□□□□ -1.2
SCN1A-211ENST00000635893 C7orf43Q8WVR3 580 aa7.57□□□□□ -1.2
SCN1A-211ENST00000635893 ELOA3CA0A087WX78 387 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-211ENST00000635893 USP17L3A6NCW0 530 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 USP17L4A6NCW7 530 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 ELOA3DA6NLF2 546 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-211ENST00000635893 POM121CA8CG34 1229 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 FURINP09958 794 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 ELOA3BQ3SY89 546 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 CCDC102BQ68D86 513 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 USP17L2Q6R6M4 530 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 USP17L1Q7RTZ2 530 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 SYT9Q86SS6 491 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 ELOA3Q8NG57 546 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 ADAMTS19Q8TE59 1207 aa7.56□□□□□ -1.2
SCN1A-211ENST00000635893 SIN3BO75182 1162 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 CHRNA4P43681 627 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 CLDN10P78369 228 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 HDGFL1Q5TGJ6 251 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 C1orf53Q5VUE5 145 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 RHPN1Q8TCX5 695 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 TRIM11Q96F44 468 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 MDFIQ99750 246 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 KIAA1024Q9UPX6 916 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 CHMP3Q9Y3E7 222 aa7.55□□□□□ -1.2
SCN1A-211ENST00000635893 M0R2N6 131 aa7.54□□□□□ -1.2
SCN1A-211ENST00000635893 ATP9BO43861 1147 aa7.54□□□□□ -1.2
SCN1A-211ENST00000635893 PSMA6P60900 246 aaKnown RBP7.54□□□□□ -1.2
SCN1A-211ENST00000635893 SH3PXD2AQ5TCZ1 1133 aa7.54□□□□□ -1.2
SCN1A-211ENST00000635893 LARGE2Q8N3Y3 721 aa7.54□□□□□ -1.2
SCN1A-211ENST00000635893 PLVAPQ9BX97 442 aa7.54□□□□□ -1.2
SCN1A-211ENST00000635893 PALM3A6NDB9 673 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-211ENST00000635893 ADARB2-AS1A8MUL3 147 aa7.53□□□□□ -1.2
SCN1A-211ENST00000635893 SPATA31C1P0DKV0 1188 aa7.53□□□□□ -1.2
SCN1A-211ENST00000635893 HIRAP54198 1017 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-211ENST00000635893 SFSWAPQ12872 951 aaKnown RBP7.53□□□□□ -1.2
SCN1A-211ENST00000635893 POTEAQ6S8J7 498 aa7.53□□□□□ -1.2
SCN1A-211ENST00000635893 OGFOD1Q8N543 542 aa7.53□□□□□ -1.2
SCN1A-211ENST00000635893 UCN2Q96RP3 112 aa7.53□□□□□ -1.2
SCN1A-211ENST00000635893 TSPAN10Q9H1Z9 355 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-211ENST00000635893 ANKIB1Q9P2G1 1089 aa7.53□□□□□ -1.2
SCN1A-211ENST00000635893 SPDYE3A6NKU9 549 aa7.52□□□□□ -1.21
SCN1A-211ENST00000635893 XP32Q5T750 250 aa7.52□□□□□ -1.21
SCN1A-211ENST00000635893 SLC30A3Q99726 388 aa7.52□□□□□ -1.21
SCN1A-211ENST00000635893 MKRN1Q9UHC7 482 aaKnown RBP7.52□□□□□ -1.21
SCN1A-211ENST00000635893 SPEM2Q0P670 501 aa7.51□□□□□ -1.21
SCN1A-211ENST00000635893 NEUROD1Q13562 356 aa7.51□□□□□ -1.21
SCN1A-211ENST00000635893 SIX5Q8N196 739 aa7.51□□□□□ -1.21
SCN1A-211ENST00000635893 TNFRSF25Q93038 417 aa7.51□□□□□ -1.21
SCN1A-211ENST00000635893 PHACTR1Q9C0D0 580 aa7.51□□□□□ -1.21
SCN1A-211ENST00000635893 HCN4Q9Y3Q4 1203 aa7.51□□□□□ -1.21
SCN1A-211ENST00000635893 RBM19Q9Y4C8 960 aaKnown RBP7.51□□□□□ -1.21
SCN1A-211ENST00000635893 CEP63Q96MT8 703 aa7.5□□□□□ -1.21
SCN1A-211ENST00000635893 BRD7Q9NPI1 651 aa7.5□□□□□ -1.21
SCN1A-211ENST00000635893 SFI1A8K8P3 1242 aa7.49□□□□□ -1.21
SCN1A-211ENST00000635893 GATA4P43694 442 aa7.49□□□□□ -1.21
SCN1A-211ENST00000635893 KCNQ4P56696 695 aa7.49□□□□□ -1.21
SCN1A-211ENST00000635893 PRRT3Q5FWE3 981 aa7.49□□□□□ -1.21
SCN1A-211ENST00000635893 TSEN2Q8NCE0 465 aaKnown RBP7.49□□□□□ -1.21
SCN1A-211ENST00000635893 HSH2DQ96JZ2 352 aa7.49□□□□□ -1.21
SCN1A-211ENST00000635893 PRDM6Q9NQX0 595 aa7.49□□□□□ -1.21
SCN1A-211ENST00000635893 KCNH4Q9UQ05 1017 aa7.49□□□□□ -1.21
SCN1A-211ENST00000635893 M0R082 166 aa7.48□□□□□ -1.21
SCN1A-211ENST00000635893 PPP1R12BO60237 982 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-211ENST00000635893 ADH7P40394 386 aa7.48□□□□□ -1.21
SCN1A-211ENST00000635893 ZNF417Q8TAU3 575 aa7.48□□□□□ -1.21
SCN1A-211ENST00000635893 ZNF594Q96JF6 807 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-211ENST00000635893 SUSD3Q96L08 255 aa7.48□□□□□ -1.21
SCN1A-211ENST00000635893 ZNF587Q96SQ5 575 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-211ENST00000635893 STARD13Q9Y3M8 1113 aa7.48□□□□□ -1.21
SCN1A-211ENST00000635893 DKK1O94907 266 aa7.47□□□□□ -1.21
SCN1A-211ENST00000635893 TYRO3Q06418 890 aa7.47□□□□□ -1.21
SCN1A-211ENST00000635893 DOC2BQ14184 412 aa7.47□□□□□ -1.21
SCN1A-211ENST00000635893 MICALL1Q8N3F8 863 aa7.47□□□□□ -1.21
SCN1A-211ENST00000635893 STAG2Q8N3U4 1231 aa7.47□□□□□ -1.21
SCN1A-211ENST00000635893 ZNF280CQ8ND82 737 aa7.47□□□□□ -1.21
SCN1A-211ENST00000635893 GAS2L2Q8NHY3 880 aa7.47□□□□□ -1.21
SCN1A-211ENST00000635893 ATAD2Q6PL18 1390 aa7.46□□□□□ -1.21
SCN1A-211ENST00000635893 C21orf2O43822 256 aa7.46□□□□□ -1.22
SCN1A-211ENST00000635893 APBA3O96018 575 aa7.46□□□□□ -1.22
SCN1A-211ENST00000635893 ALBP02768 609 aa7.46□□□□□ -1.22
SCN1A-211ENST00000635893 COL9A3Q14050 684 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-211ENST00000635893 HIF1AQ16665 826 aa7.46□□□□□ -1.22
SCN1A-211ENST00000635893 RAB44Q7Z6P3 723 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-211ENST00000635893 ALDH16A1Q8IZ83 802 aa7.46□□□□□ -1.22
SCN1A-211ENST00000635893 C2orf49Q9BVC5 232 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-211ENST00000635893 RASA1P20936 1047 aa7.45□□□□□ -1.22
SCN1A-211ENST00000635893 Q8N3U1 123 aa7.45□□□□□ -1.22
SCN1A-211ENST00000635893 TFIP11Q9UBB9 837 aaKnown RBP7.45□□□□□ -1.22
SCN1A-211ENST00000635893 SEC13P55735 322 aa7.44□□□□□ -1.22
SCN1A-211ENST00000635893 TRIM28Q13263 835 aaKnown RBP7.44□□□□□ -1.22
SCN1A-211ENST00000635893 C8orf86Q6ZUL3 223 aa7.44□□□□□ -1.22
SCN1A-211ENST00000635893 BTLAQ7Z6A9 289 aa7.44□□□□□ -1.22
SCN1A-211ENST00000635893 SCG3Q8WXD2 468 aaKnown RBP7.44□□□□□ -1.22
SCN1A-211ENST00000635893 GLMNQ92990 594 aa7.44□□□□□ -1.22
SCN1A-211ENST00000635893 SEMA6BQ9H3T3 888 aa7.44□□□□□ -1.22
SCN1A-211ENST00000635893 EFCC1Q9HA90 598 aa7.44□□□□□ -1.22
SCN1A-211ENST00000635893 NID1P14543 1247 aa7.43□□□□□ -1.22
SCN1A-211ENST00000635893 C20orf204Q6ZNR8 217 aa7.43□□□□□ -1.22
SCN1A-211ENST00000635893 FNBP4Q8N3X1 1017 aaPredicted RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms