RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 EML1O00423 815 aa7□□□□□ -1.29
SCN1A-208ENST00000625916 TPCN2Q8NHX9 752 aa7□□□□□ -1.29
SCN1A-208ENST00000625916 RHPN1Q8TCX5 695 aa7□□□□□ -1.29
SCN1A-208ENST00000625916 POM121Q96HA1 1249 aa7□□□□□ -1.29
SCN1A-208ENST00000625916 SPDYE3A6NKU9 549 aa6.99□□□□□ -1.29
SCN1A-208ENST00000625916 SPATA31C1P0DKV0 1188 aa6.99□□□□□ -1.29
SCN1A-208ENST00000625916 ATP1A2P50993 1020 aa6.99□□□□□ -1.29
SCN1A-208ENST00000625916 EPHA4P54764 986 aa6.99□□□□□ -1.29
SCN1A-208ENST00000625916 DOC2BQ14184 412 aa6.99□□□□□ -1.29
SCN1A-208ENST00000625916 CHMP3Q9Y3E7 222 aa6.99□□□□□ -1.29
SCN1A-208ENST00000625916 GPC6Q9Y625 555 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-208ENST00000625916 SIN3BO75182 1162 aa6.98□□□□□ -1.29
SCN1A-208ENST00000625916 GATA4P43694 442 aa6.98□□□□□ -1.29
SCN1A-208ENST00000625916 SFSWAPQ12872 951 aaKnown RBP6.98□□□□□ -1.29
SCN1A-208ENST00000625916 PRRT3Q5FWE3 981 aa6.98□□□□□ -1.29
SCN1A-208ENST00000625916 CCDC102BQ68D86 513 aa6.98□□□□□ -1.29
SCN1A-208ENST00000625916 PSMA6P60900 246 aaKnown RBP6.97□□□□□ -1.29
SCN1A-208ENST00000625916 NEUROD1Q13562 356 aa6.97□□□□□ -1.29
SCN1A-208ENST00000625916 SH3PXD2AQ5TCZ1 1133 aa6.97□□□□□ -1.29
SCN1A-208ENST00000625916 Q8N3U1 123 aa6.97□□□□□ -1.29
SCN1A-208ENST00000625916 SLC30A3Q99726 388 aa6.97□□□□□ -1.29
SCN1A-208ENST00000625916 SEMA6BQ9H3T3 888 aa6.97□□□□□ -1.29
SCN1A-208ENST00000625916 USP17L3A6NCW0 530 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 USP17L4A6NCW7 530 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 POM121CA8CG34 1229 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 ADARB2-AS1A8MUL3 147 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 M0R082 166 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 UBTFP17480 764 aaKnown RBP6.96□□□□□ -1.3
SCN1A-208ENST00000625916 SPEM2Q0P670 501 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 USP17L2Q6R6M4 530 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 USP17L1Q7RTZ2 530 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 ZNF417Q8TAU3 575 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 CEP63Q96MT8 703 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 ZNF587Q96SQ5 575 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-208ENST00000625916 TSPAN10Q9H1Z9 355 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-208ENST00000625916 ANKIB1Q9P2G1 1089 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 KIAA1024Q9UPX6 916 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 HCN4Q9Y3Q4 1203 aa6.96□□□□□ -1.3
SCN1A-208ENST00000625916 RBM19Q9Y4C8 960 aaKnown RBP6.96□□□□□ -1.3
SCN1A-208ENST00000625916 SFI1A8K8P3 1242 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 ZBTB7BO15156 539 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-208ENST00000625916 APBA3O96018 575 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 CLDN10P78369 228 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 HDGFL1Q5TGJ6 251 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 C1orf53Q5VUE5 145 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 RAB44Q7Z6P3 723 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-208ENST00000625916 PLEKHM2Q8IWE5 1019 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 C7orf43Q8WVR3 580 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 HSH2DQ96JZ2 352 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 PHACTR1Q9C0D0 580 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 BRD7Q9NPI1 651 aa6.95□□□□□ -1.3
SCN1A-208ENST00000625916 OGFOD1Q8N543 542 aa6.94□□□□□ -1.3
SCN1A-208ENST00000625916 ADAMTS19Q8TE59 1207 aa6.94□□□□□ -1.3
SCN1A-208ENST00000625916 TNFRSF25Q93038 417 aa6.94□□□□□ -1.3
SCN1A-208ENST00000625916 MDFIQ99750 246 aa6.94□□□□□ -1.3
SCN1A-208ENST00000625916 MKRN1Q9UHC7 482 aaKnown RBP6.94□□□□□ -1.3
SCN1A-208ENST00000625916 PALM3A6NDB9 673 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-208ENST00000625916 ATP9BO43861 1147 aa6.93□□□□□ -1.3
SCN1A-208ENST00000625916 PPP1R12BO60237 982 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-208ENST00000625916 ADH7P40394 386 aa6.93□□□□□ -1.3
SCN1A-208ENST00000625916 FLIIQ13045 1269 aa6.93□□□□□ -1.3
SCN1A-208ENST00000625916 LARGE2Q8N3Y3 721 aa6.93□□□□□ -1.3
SCN1A-208ENST00000625916 KCNH4Q9UQ05 1017 aa6.93□□□□□ -1.3
SCN1A-208ENST00000625916 FAM229AH3BQW9 127 aa6.92□□□□□ -1.3
SCN1A-208ENST00000625916 ALBP02768 609 aa6.92□□□□□ -1.3
SCN1A-208ENST00000625916 HIRAP54198 1017 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-208ENST00000625916 TBC1D8BQ0IIM8 1120 aa6.92□□□□□ -1.3
SCN1A-208ENST00000625916 TRIM28Q13263 835 aaKnown RBP6.92□□□□□ -1.3
SCN1A-208ENST00000625916 C8orf86Q6ZUL3 223 aa6.92□□□□□ -1.3
SCN1A-208ENST00000625916 MICALL1Q8N3F8 863 aa6.92□□□□□ -1.3
SCN1A-208ENST00000625916 TSEN2Q8NCE0 465 aaKnown RBP6.92□□□□□ -1.3
SCN1A-208ENST00000625916 ZNF594Q96JF6 807 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-208ENST00000625916 UCN2Q96RP3 112 aa6.92□□□□□ -1.3
SCN1A-208ENST00000625916 STARD13Q9Y3M8 1113 aa6.92□□□□□ -1.3
SCN1A-208ENST00000625916 M0R2N6 131 aa6.91□□□□□ -1.3
SCN1A-208ENST00000625916 PRKCSHP14314 528 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-208ENST00000625916 ZNF280CQ8ND82 737 aa6.91□□□□□ -1.3
SCN1A-208ENST00000625916 BHMTQ93088 406 aa6.91□□□□□ -1.3
SCN1A-208ENST00000625916 SUSD3Q96L08 255 aa6.91□□□□□ -1.3
SCN1A-208ENST00000625916 NACC1Q96RE7 527 aa6.91□□□□□ -1.3
SCN1A-208ENST00000625916 PRDM6Q9NQX0 595 aa6.91□□□□□ -1.3
SCN1A-208ENST00000625916 KCNQ4P56696 695 aa6.9□□□□□ -1.3
SCN1A-208ENST00000625916 TYRO3Q06418 890 aa6.9□□□□□ -1.3
SCN1A-208ENST00000625916 ZMYM1Q5SVZ6 1142 aa6.9□□□□□ -1.3
SCN1A-208ENST00000625916 SIX5Q8N196 739 aa6.9□□□□□ -1.3
SCN1A-208ENST00000625916 IGFLR1Q9H665 355 aa6.9□□□□□ -1.3
SCN1A-208ENST00000625916 ITGB7P26010 798 aa6.89□□□□□ -1.31
SCN1A-208ENST00000625916 COL9A3Q14050 684 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-208ENST00000625916 TRAPPC3LQ5T215 181 aa6.89□□□□□ -1.31
SCN1A-208ENST00000625916 POTEAQ6S8J7 498 aa6.89□□□□□ -1.31
SCN1A-208ENST00000625916 ALDH16A1Q8IZ83 802 aa6.89□□□□□ -1.31
SCN1A-208ENST00000625916 CHMP7Q8WUX9 453 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-208ENST00000625916 NGLY1Q96IV0 654 aa6.89□□□□□ -1.31
SCN1A-208ENST00000625916 UBE2OQ9C0C9 1292 aaKnown RBP6.89□□□□□ -1.31
SCN1A-208ENST00000625916 TPSG1Q9NRR2 321 aa6.89□□□□□ -1.31
SCN1A-208ENST00000625916 ATAD2Q6PL18 1390 aa6.88□□□□□ -1.31
SCN1A-208ENST00000625916 LILRB5O75023 590 aa6.88□□□□□ -1.31
SCN1A-208ENST00000625916 NID1P14543 1247 aa6.88□□□□□ -1.31
SCN1A-208ENST00000625916 RASA1P20936 1047 aa6.88□□□□□ -1.31
SCN1A-208ENST00000625916 GRIK4Q16099 956 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms