RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 TNS3Q68CZ2 1445 aa11.45□□□□□ -0.58
PDPN-212ENST00000621990 RAPGEF4Q8WZA2 1011 aa11.45□□□□□ -0.58
PDPN-212ENST00000621990 CWF19L2Q2TBE0 894 aaKnown RBP11.45□□□□□ -0.58
PDPN-212ENST00000621990 CLASRPQ8N2M8 674 aaKnown RBP11.45□□□□□ -0.58
PDPN-212ENST00000621990 LAMB4A4D0S4 1761 aa11.45□□□□□ -0.58
PDPN-212ENST00000621990 CPDO75976 1380 aa11.45□□□□□ -0.58
PDPN-212ENST00000621990 BRD1O95696 1058 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 ZNF445P59923 1031 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 ZC3H6P61129 1189 aaKnown RBP11.44□□□□□ -0.58
PDPN-212ENST00000621990 MCTP1Q6DN14 999 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 SPG7Q9UQ90 795 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 DDX49Q9Y6V7 483 aaKnown RBP11.44□□□□□ -0.58
PDPN-212ENST00000621990 ATF3P18847 181 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 LRP10Q7Z4F1 713 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 ECHDC1Q9NTX5 307 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 COL15A1P39059 1388 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 IGKV5-2P06315 115 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 TATP17735 454 aaPredicted RBP11.44□□□□□ -0.58
PDPN-212ENST00000621990 SUCLG2Q96I99 432 aa11.44□□□□□ -0.58
PDPN-212ENST00000621990 TTC14Q96N46 770 aa11.43□□□□□ -0.58
PDPN-212ENST00000621990 MAP4K4O95819 1239 aaPredicted RBP11.43□□□□□ -0.58
PDPN-212ENST00000621990 LARP1Q6PKG0 1096 aaKnown RBP11.43□□□□□ -0.58
PDPN-212ENST00000621990 IFNL2Q8IZJ0 200 aa11.43□□□□□ -0.58
PDPN-212ENST00000621990 KCNB2Q92953 911 aa11.43□□□□□ -0.58
PDPN-212ENST00000621990 GPATCH3Q96I76 525 aa11.43□□□□□ -0.58
PDPN-212ENST00000621990 BICC1Q9H694 974 aaKnown RBP11.43□□□□□ -0.58
PDPN-212ENST00000621990 SNX14Q9Y5W7 946 aa11.43□□□□□ -0.58
PDPN-212ENST00000621990 ARFGEF2Q9Y6D5 1785 aa11.42□□□□□ -0.58
PDPN-212ENST00000621990 OS9Q13438 667 aaPredicted RBP11.42□□□□□ -0.58
PDPN-212ENST00000621990 DCAF5Q96JK2 942 aa11.42□□□□□ -0.58
PDPN-212ENST00000621990 ARXQ96QS3 562 aa11.42□□□□□ -0.58
PDPN-212ENST00000621990 SNRKQ9NRH2 765 aa11.42□□□□□ -0.58
PDPN-212ENST00000621990 NLRP2Q9NX02 1062 aa11.42□□□□□ -0.58
PDPN-212ENST00000621990 XIRP1Q702N8 1843 aaKnown RBP11.42□□□□□ -0.58
PDPN-212ENST00000621990 NFATC2IPQ8NCF5 419 aa11.42□□□□□ -0.58
PDPN-212ENST00000621990 UPF3BQ9BZI7 483 aaKnown RBP11.42□□□□□ -0.58
PDPN-212ENST00000621990 NEURL1BA8MQ27 555 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 SASH1O94885 1247 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 SLC39A6Q13433 755 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 EVI5LQ96CN4 794 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 PA2G4Q9UQ80 394 aaKnown RBP11.41□□□□□ -0.58
PDPN-212ENST00000621990 SPATA31A3Q5VYP0 1347 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 AFDNP55196 1824 aaKnown RBP11.41□□□□□ -0.58
PDPN-212ENST00000621990 GCKRQ14397 625 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 CADPS2Q86UW7 1296 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 GPT2Q8TD30 523 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 RUFY2Q8WXA3 655 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 METTL22Q9BUU2 404 aaPredicted RBP11.41□□□□□ -0.58
PDPN-212ENST00000621990 RRAGDQ9NQL2 400 aaPredicted RBP11.41□□□□□ -0.58
PDPN-212ENST00000621990 UBR2Q8IWV8 1755 aa11.41□□□□□ -0.58
PDPN-212ENST00000621990 CYP27B1O15528 508 aa11.4□□□□□ -0.58
PDPN-212ENST00000621990 IFIT2P09913 472 aaKnown RBP11.4□□□□□ -0.58
PDPN-212ENST00000621990 ZSCAN23Q3MJ62 389 aa11.4□□□□□ -0.58
PDPN-212ENST00000621990 CWC27Q6UX04 472 aaKnown RBP11.4□□□□□ -0.58
PDPN-212ENST00000621990 ZNF496Q96IT1 587 aaPredicted RBP11.4□□□□□ -0.58
PDPN-212ENST00000621990 SNRPA1P09661 255 aaKnown RBP11.4□□□□□ -0.58
PDPN-212ENST00000621990 RIC3Q7Z5B4 369 aa11.4□□□□□ -0.58
PDPN-212ENST00000621990 RASEFQ8IZ41 740 aa11.4□□□□□ -0.58
PDPN-212ENST00000621990 PAPPAQ13219 1627 aa11.4□□□□□ -0.59
PDPN-212ENST00000621990 PRPF40AO75400 957 aaKnown RBP11.39□□□□□ -0.59
PDPN-212ENST00000621990 NEXNQ0ZGT2 675 aa11.39□□□□□ -0.59
PDPN-212ENST00000621990 KIAA1211Q6ZU35 1233 aa11.39□□□□□ -0.59
PDPN-212ENST00000621990 AACSQ86V21 672 aa11.39□□□□□ -0.59
PDPN-212ENST00000621990 XAGE3Q8WTP9 111 aa11.39□□□□□ -0.59
PDPN-212ENST00000621990 DDX17Q92841 729 aaKnown RBP11.39□□□□□ -0.59
PDPN-212ENST00000621990 EAF2Q96CJ1 260 aaPredicted RBP11.39□□□□□ -0.59
PDPN-212ENST00000621990 TM6SF1Q9BZW5 370 aa11.39□□□□□ -0.59
PDPN-212ENST00000621990 DIAPH3Q9NSV4 1193 aa11.39□□□□□ -0.59
PDPN-212ENST00000621990 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.39□□□□□ -0.59
PDPN-212ENST00000621990 AIMP1Q12904 312 aaKnown RBP11.39□□□□□ -0.59
PDPN-212ENST00000621990 RPAP1Q9BWH6 1393 aaPredicted RBP11.38□□□□□ -0.59
PDPN-212ENST00000621990 HIP1O00291 1037 aa11.38□□□□□ -0.59
PDPN-212ENST00000621990 G3BP1Q13283 466 aaKnown RBP eCLIP11.38□□□□□ -0.59
PDPN-212ENST00000621990 CAVIN1Q6NZI2 390 aaKnown RBP11.38□□□□□ -0.59
PDPN-212ENST00000621990 COPS6Q7L5N1 327 aa11.38□□□□□ -0.59
PDPN-212ENST00000621990 PPP1R9BQ96SB3 815 aa11.38□□□□□ -0.59
PDPN-212ENST00000621990 NUP188Q5SRE5 1749 aa11.38□□□□□ -0.59
PDPN-212ENST00000621990 JCADQ9P266 1359 aa11.38□□□□□ -0.59
PDPN-212ENST00000621990 MBD3O95983 291 aa11.38□□□□□ -0.59
PDPN-212ENST00000621990 RABL6Q3YEC7 729 aaPredicted RBP11.38□□□□□ -0.59
PDPN-212ENST00000621990 FMNL2Q96PY5 1086 aa11.38□□□□□ -0.59
PDPN-212ENST00000621990 COPRSQ9NQ92 184 aa11.38□□□□□ -0.59
PDPN-212ENST00000621990 AK2P54819 239 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 ANKRD13DQ6ZTN6 518 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 RUFY3Q7L099 469 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 LIMCH1Q9UPQ0 1083 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 WDR33Q9C0J8 1336 aaKnown RBP11.37□□□□□ -0.59
PDPN-212ENST00000621990 MYL6BP14649 208 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 NASPP49321 788 aaPredicted RBP11.37□□□□□ -0.59
PDPN-212ENST00000621990 PTH1RQ03431 593 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 NECTIN1Q15223 517 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 CABLES1Q8TDN4 633 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 ZSWIM6Q9HCJ5 1215 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 USP16Q9Y5T5 823 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 ERBB4Q15303 1308 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 CCDC171Q6TFL3 1326 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 RFX5P48382 616 aaPredicted RBP11.37□□□□□ -0.59
PDPN-212ENST00000621990 EPHA10Q5JZY3 1008 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 VPS53Q5VIR6 699 aa11.37□□□□□ -0.59
PDPN-212ENST00000621990 TTC5Q8N0Z6 440 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms