RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 ST5P78524 1137 aa11.46□□□□□ -0.57
GPC6-202ENST00000617456 TEFQ10587 303 aa11.46□□□□□ -0.57
GPC6-202ENST00000617456 PRPF40BQ6NWY9 871 aaKnown RBP11.46□□□□□ -0.57
GPC6-202ENST00000617456 AIDAQ96BJ3 306 aa11.46□□□□□ -0.57
GPC6-202ENST00000617456 CNTNAP1P78357 1384 aa11.45□□□□□ -0.58
GPC6-202ENST00000617456 ANKRD31Q8N7Z5 1873 aa11.45□□□□□ -0.58
GPC6-202ENST00000617456 LTBP3Q9NS15 1303 aa11.45□□□□□ -0.58
GPC6-202ENST00000617456 DIAPH1O60610 1272 aaKnown RBP11.45□□□□□ -0.58
GPC6-202ENST00000617456 CNGB1Q14028 1251 aaPredicted RBP11.45□□□□□ -0.58
GPC6-202ENST00000617456 EAPPQ56P03 285 aaPredicted RBP11.45□□□□□ -0.58
GPC6-202ENST00000617456 STYK1Q6J9G0 422 aa11.45□□□□□ -0.58
GPC6-202ENST00000617456 HEG1Q9ULI3 1381 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 COL11A2P13942 1736 aaPredicted RBP11.44□□□□□ -0.58
GPC6-202ENST00000617456 IQCA1LA6NCM1 817 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 CAMTA2O94983 1202 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 SRGNP10124 158 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 VEGFBP49765 207 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 SOGA3Q5TF21 947 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 ZNF790Q6PG37 636 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 LDHDQ86WU2 507 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 MASTLQ96GX5 879 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 TEX13AQ9BXU3 409 aaPredicted RBP11.44□□□□□ -0.58
GPC6-202ENST00000617456 TAF1DQ9H5J8 278 aaPredicted RBP11.44□□□□□ -0.58
GPC6-202ENST00000617456 CLEC11AQ9Y240 323 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 FER1L6Q2WGJ9 1857 aa11.44□□□□□ -0.58
GPC6-202ENST00000617456 DICER1Q9UPY3 1922 aaKnown RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 PASKQ96RG2 1323 aa11.43□□□□□ -0.58
GPC6-202ENST00000617456 U2SURPO15042 1029 aaKnown RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 IL6STP40189 918 aaPredicted RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 PIP4K2AP48426 406 aaPredicted RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 CTCFP49711 727 aaPredicted RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 CC2D1BQ5T0F9 858 aaKnown RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 DZIP3Q86Y13 1208 aaKnown RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 IL17REQ8NFR9 667 aa11.43□□□□□ -0.58
GPC6-202ENST00000617456 FMNL2Q96PY5 1086 aa11.43□□□□□ -0.58
GPC6-202ENST00000617456 PRDM10Q9NQV6 1147 aa11.43□□□□□ -0.58
GPC6-202ENST00000617456 ZNF277Q9NRM2 450 aaPredicted RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 VIRMAQ69YN4 1812 aaKnown RBP11.43□□□□□ -0.58
GPC6-202ENST00000617456 SLX4Q8IY92 1834 aa11.43□□□□□ -0.58
GPC6-202ENST00000617456 ZNF541Q9H0D2 1346 aa11.42□□□□□ -0.58
GPC6-202ENST00000617456 TMEM88BA6NKF7 163 aa11.42□□□□□ -0.58
GPC6-202ENST00000617456 GNAT3A8MTJ3 354 aa11.42□□□□□ -0.58
GPC6-202ENST00000617456 KCNQ3O43525 872 aa11.42□□□□□ -0.58
GPC6-202ENST00000617456 LBX1P52954 281 aa11.42□□□□□ -0.58
GPC6-202ENST00000617456 CCDC93Q567U6 631 aa11.42□□□□□ -0.58
GPC6-202ENST00000617456 NBPF5PQ86XG9 351 aaPredicted RBP11.42□□□□□ -0.58
GPC6-202ENST00000617456 UBR2Q8IWV8 1755 aa11.41□□□□□ -0.58
GPC6-202ENST00000617456 SCN7AQ01118 1682 aa11.41□□□□□ -0.58
GPC6-202ENST00000617456 FAM177BA6PVY3 158 aa11.41□□□□□ -0.58
GPC6-202ENST00000617456 ERICH6BQ5W0A0 696 aa11.41□□□□□ -0.58
GPC6-202ENST00000617456 OLFM4Q6UX06 510 aa11.41□□□□□ -0.58
GPC6-202ENST00000617456 GAS2L2Q8NHY3 880 aa11.41□□□□□ -0.58
GPC6-202ENST00000617456 L3MBTL3Q96JM7 780 aaPredicted RBP11.41□□□□□ -0.58
GPC6-202ENST00000617456 HACL1Q9UJ83 578 aa11.41□□□□□ -0.58
GPC6-202ENST00000617456 CACNA1SQ13698 1873 aa11.4□□□□□ -0.58
GPC6-202ENST00000617456 NPR1P16066 1061 aa11.4□□□□□ -0.58
GPC6-202ENST00000617456 FKBP4Q02790 459 aaKnown RBP eCLIP11.4□□□□□ -0.58
GPC6-202ENST00000617456 C7orf43Q8WVR3 580 aa11.4□□□□□ -0.58
GPC6-202ENST00000617456 WBP1LQ9NX94 342 aa11.4□□□□□ -0.58
GPC6-202ENST00000617456 USP16Q9Y5T5 823 aa11.4□□□□□ -0.58
GPC6-202ENST00000617456 PRAMEF22A3QJZ6 481 aa11.39□□□□□ -0.59
GPC6-202ENST00000617456 BTBD11A6QL63 1104 aa11.39□□□□□ -0.59
GPC6-202ENST00000617456 ITGBL1O95965 494 aaPredicted RBP11.39□□□□□ -0.59
GPC6-202ENST00000617456 EPHX2P34913 555 aa11.39□□□□□ -0.59
GPC6-202ENST00000617456 MAP1SQ66K74 1059 aaPredicted RBP11.39□□□□□ -0.59
GPC6-202ENST00000617456 ABT1Q9ULW3 272 aaKnown RBP11.39□□□□□ -0.59
GPC6-202ENST00000617456 RNF123Q5XPI4 1314 aa11.38□□□□□ -0.59
GPC6-202ENST00000617456 DEFB115Q30KQ5 88 aa11.38□□□□□ -0.59
GPC6-202ENST00000617456 CNTROBQ8N137 903 aa11.38□□□□□ -0.59
GPC6-202ENST00000617456 SYNE4Q8N205 404 aa11.38□□□□□ -0.59
GPC6-202ENST00000617456 PKNOX2Q96KN3 472 aa11.38□□□□□ -0.59
GPC6-202ENST00000617456 NIP7Q9Y221 180 aaKnown RBP eCLIP11.38□□□□□ -0.59
GPC6-202ENST00000617456 ZNF652Q9Y2D9 606 aa11.38□□□□□ -0.59
GPC6-202ENST00000617456 HSPA8P11142 646 aaKnown RBP11.37□□□□□ -0.59
GPC6-202ENST00000617456 IARSP41252 1262 aaKnown RBP11.37□□□□□ -0.59
GPC6-202ENST00000617456 PAXIP1Q6ZW49 1069 aaPredicted RBP11.37□□□□□ -0.59
GPC6-202ENST00000617456 HOMEZQ8IX15 550 aa11.37□□□□□ -0.59
GPC6-202ENST00000617456 RTKN2Q8IZC4 609 aa11.37□□□□□ -0.59
GPC6-202ENST00000617456 CFAP53Q96M91 514 aa11.37□□□□□ -0.59
GPC6-202ENST00000617456 GJA3Q9Y6H8 435 aa11.37□□□□□ -0.59
GPC6-202ENST00000617456 SCN4AP35499 1836 aa11.37□□□□□ -0.59
GPC6-202ENST00000617456 GTF2E1P29083 439 aaPredicted RBP11.36□□□□□ -0.59
GPC6-202ENST00000617456 GRM1Q13255 1194 aa11.36□□□□□ -0.59
GPC6-202ENST00000617456 CLEC4GQ6UXB4 293 aa11.36□□□□□ -0.59
GPC6-202ENST00000617456 TPTE2Q6XPS3 522 aa11.36□□□□□ -0.59
GPC6-202ENST00000617456 PNMA8AQ86V59 439 aaPredicted RBP11.36□□□□□ -0.59
GPC6-202ENST00000617456 ABHD8Q96I13 439 aa11.36□□□□□ -0.59
GPC6-202ENST00000617456 PHACTR3Q96KR7 559 aa11.36□□□□□ -0.59
GPC6-202ENST00000617456 WDR33Q9C0J8 1336 aaKnown RBP11.35□□□□□ -0.59
GPC6-202ENST00000617456 RASSF10A6NK89 507 aa11.35□□□□□ -0.59
GPC6-202ENST00000617456 FZD9O00144 591 aa11.35□□□□□ -0.59
GPC6-202ENST00000617456 SNRPA1P09661 255 aaKnown RBP11.35□□□□□ -0.59
GPC6-202ENST00000617456 PRKAR2BP31323 418 aa11.35□□□□□ -0.59
GPC6-202ENST00000617456 MAP2K1Q02750 393 aaPredicted RBP11.35□□□□□ -0.59
GPC6-202ENST00000617456 FMR1Q06787 632 aaKnown RBP eCLIP11.35□□□□□ -0.59
GPC6-202ENST00000617456 FAM161AQ3B820 660 aa11.35□□□□□ -0.59
GPC6-202ENST00000617456 MCM10Q7L590 875 aa11.35□□□□□ -0.59
GPC6-202ENST00000617456 NUDCQ9Y266 331 aa11.35□□□□□ -0.59
GPC6-202ENST00000617456 CEMIPQ8WUJ3 1361 aa11.35□□□□□ -0.59
GPC6-202ENST00000617456 BCORQ6W2J9 1755 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms