RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 ZNF335Q9H4Z2 1342 aaPredicted RBP11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 IPO7O95373 1038 aaKnown RBP11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 RBM26Q5T8P6 1007 aaKnown RBP11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 ZNF790Q6PG37 636 aa11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 CCT2P78371 535 aaKnown RBP11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 CCDC96Q2M329 555 aa11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 METP08581 1390 aa11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 TRPM2O94759 1503 aa11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 PARD3Q8TEW0 1356 aa11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 MAP3K5Q99683 1374 aa11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 RIMBP2O15034 1052 aa11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 LINS1Q8NG48 757 aa11.98□□□□□ -0.49
SMARCA1-205ENST00000617310 IRS4O14654 1257 aaPredicted RBP11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 ZNF213O14771 459 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 ANKRD1Q15327 319 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 ZNF444Q8N0Y2 327 aaPredicted RBP11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 KLHDC4Q8TBB5 520 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 IL16Q14005 1332 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 TPTE2Q6XPS3 522 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 VAT1LQ9HCJ6 419 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 IL13P35225 146 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 MRPL50Q8N5N7 158 aaKnown RBP11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 ZNF496Q96IT1 587 aaPredicted RBP11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 FEZ1Q99689 392 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 LRRC2Q9BYS8 371 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 STX8Q9UNK0 236 aa11.97□□□□□ -0.49
SMARCA1-205ENST00000617310 NEO1Q92859 1461 aa11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 PCDH11XQ9BZA7 1347 aa11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 PCDH11YQ9BZA8 1340 aa11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 KRT32Q14532 448 aa11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 ERCC6L2Q5T890 1561 aa11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 IFIT3O14879 490 aaKnown RBP11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 TRAK2O60296 914 aa11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 HMGB2P26583 209 aaKnown RBP11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 DHX8Q14562 1220 aaKnown RBP11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 UTP14AQ9BVJ6 771 aaKnown RBP11.96□□□□□ -0.49
SMARCA1-205ENST00000617310 POLR3AO14802 1390 aaPredicted RBP11.96□□□□□ -0.5
SMARCA1-205ENST00000617310 TXLNAP40222 546 aa11.96□□□□□ -0.5
SMARCA1-205ENST00000617310 PDILTQ8N807 584 aa11.96□□□□□ -0.5
SMARCA1-205ENST00000617310 OFD1O75665 1012 aa11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 ZNF76P36508 570 aa11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 KCNQ4P56696 695 aa11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 ZFYVE16Q7Z3T8 1539 aa11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 TSPOAP1O95153 1857 aa11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 TTLL5Q6EMB2 1281 aa11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 MICU3Q86XE3 530 aa11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 IQCA1Q86XH1 822 aa11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 PUS7Q96PZ0 661 aaKnown RBP11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 ZC3H12CQ9C0D7 883 aaKnown RBP11.95□□□□□ -0.5
SMARCA1-205ENST00000617310 KCNQ3O43525 872 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 HOMER1Q86YM7 354 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 EPS15P42566 896 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 PICALMQ13492 652 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 TBC1D9Q6ZT07 1266 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 MBD5Q9P267 1494 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 CYP7A1P22680 504 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 KRT85P78386 507 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 TRAPPC3LQ5T215 181 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 OLFM4Q6UX06 510 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 ZNF396Q96N95 335 aaPredicted RBP11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 DNMT1P26358 1616 aaKnown RBP11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 PLEKHG3A1L390 1219 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 TSPY2A6NKD2 308 aa11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 NAP1L1P55209 391 aaKnown RBP11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 CTCFLQ8NI51 663 aaPredicted RBP11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 DDX21Q9NR30 783 aaKnown RBP eCLIP11.94□□□□□ -0.5
SMARCA1-205ENST00000617310 APBA3O96018 575 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 NBPF14Q5TI25 921 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 PARP3Q9Y6F1 533 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 ABCA8O94911 1581 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 A0A0U1RQG5 324 aaPredicted RBP11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 GOLGA8BA8MQT2 603 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 TIMM10P62072 90 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 SLC9C2Q5TAH2 1124 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 MSL1Q68DK7 614 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 MIGA1Q8NAN2 632 aa11.93□□□□□ -0.5
SMARCA1-205ENST00000617310 WDR33Q9C0J8 1336 aaKnown RBP11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 ALDH1L1O75891 902 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 EVI5LQ96CN4 794 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 TRIM5Q9C035 493 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 UGGT1Q9NYU2 1555 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 ZFYVE27Q5T4F4 411 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 ANKRD44Q8N8A2 993 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 JMYQ8N9B5 988 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 VEZTQ9HBM0 779 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 CLEC11AQ9Y240 323 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 SBNO1A3KN83 1393 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 CDKL5O76039 1030 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 ZNF594Q96JF6 807 aaPredicted RBP11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 ZNF287Q9HBT7 754 aa11.92□□□□□ -0.5
SMARCA1-205ENST00000617310 LDHCP07864 332 aa11.91□□□□□ -0.5
SMARCA1-205ENST00000617310 SDSP20132 328 aa11.91□□□□□ -0.5
SMARCA1-205ENST00000617310 COL17A1Q9UMD9 1497 aaPredicted RBP11.91□□□□□ -0.5
SMARCA1-205ENST00000617310 EDC4Q6P2E9 1401 aaKnown RBP11.91□□□□□ -0.5
SMARCA1-205ENST00000617310 SMC2O95347 1197 aa11.91□□□□□ -0.5
SMARCA1-205ENST00000617310 OGFOD1Q8N543 542 aa11.91□□□□□ -0.5
SMARCA1-205ENST00000617310 CNBD1Q8NA66 436 aa11.91□□□□□ -0.5
SMARCA1-205ENST00000617310 SPATA32Q96LK8 384 aa11.91□□□□□ -0.5
SMARCA1-205ENST00000617310 BICC1Q9H694 974 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms