RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CLEC4GQ6UXB4 293 aa25.17■■□□□ 1.62
CDX1-202ENST00000616154 DNAJC5GQ8N7S2 189 aa25.17■■□□□ 1.62
CDX1-202ENST00000616154 SLX4Q8IY92 1834 aa25.17■■□□□ 1.62
CDX1-202ENST00000616154 KDM3BQ7LBC6 1761 aa25.17■■□□□ 1.62
CDX1-202ENST00000616154 GLTPD2A6NH11 291 aa25.16■■□□□ 1.62
CDX1-202ENST00000616154 RGL2O15211 777 aa25.15■■□□□ 1.62
CDX1-202ENST00000616154 NPHP1O15259 732 aa25.15■■□□□ 1.62
CDX1-202ENST00000616154 TAF7Q15545 349 aaPredicted RBP25.15■■□□□ 1.62
CDX1-202ENST00000616154 ZNF652Q9Y2D9 606 aa25.15■■□□□ 1.62
CDX1-202ENST00000616154 NBPF26B4DH59 902 aa25.14■■□□□ 1.62
CDX1-202ENST00000616154 C21orf2O43822 256 aa25.14■■□□□ 1.62
CDX1-202ENST00000616154 STYK1Q6J9G0 422 aa25.14■■□□□ 1.62
CDX1-202ENST00000616154 NBPF10Q6P3W6 841 aaKnown RBP25.14■■□□□ 1.62
CDX1-202ENST00000616154 NBPF15Q8N660 670 aa25.14■■□□□ 1.62
CDX1-202ENST00000616154 CNKSR1Q969H4 720 aa25.14■■□□□ 1.62
CDX1-202ENST00000616154 SRGNP10124 158 aa25.13■■□□□ 1.61
CDX1-202ENST00000616154 IFFO2Q5TF58 517 aa25.13■■□□□ 1.61
CDX1-202ENST00000616154 SMC1BQ8NDV3 1235 aa25.12■■□□□ 1.61
CDX1-202ENST00000616154 ZNF219Q9P2Y4 722 aaPredicted RBP25.12■■□□□ 1.61
CDX1-202ENST00000616154 LTBP3Q9NS15 1303 aa25.12■■□□□ 1.61
CDX1-202ENST00000616154 NEFMP07197 916 aa25.12■■□□□ 1.61
CDX1-202ENST00000616154 VEGFAP15692 232 aaPredicted RBP25.12■■□□□ 1.61
CDX1-202ENST00000616154 NBPF5PQ86XG9 351 aaPredicted RBP25.12■■□□□ 1.61
CDX1-202ENST00000616154 MASTLQ96GX5 879 aa25.12■■□□□ 1.61
CDX1-202ENST00000616154 RALBP1Q15311 655 aa25.11■■□□□ 1.61
CDX1-202ENST00000616154 PRPF40BQ6NWY9 871 aaKnown RBP25.11■■□□□ 1.61
CDX1-202ENST00000616154 PLEKHF1Q96S99 279 aa25.1■■□□□ 1.61
CDX1-202ENST00000616154 TAOK3Q9H2K8 898 aa25.1■■□□□ 1.61
CDX1-202ENST00000616154 MIS18AQ9NYP9 233 aa25.1■■□□□ 1.61
CDX1-202ENST00000616154 SOGA3Q5TF21 947 aa25.09■■□□□ 1.61
CDX1-202ENST00000616154 PNISRQ8TF01 805 aaKnown RBP25.09■■□□□ 1.61
CDX1-202ENST00000616154 DDX10Q13206 875 aaKnown RBP25.08■■□□□ 1.6
CDX1-202ENST00000616154 ERFEQ4G0M1 354 aa25.08■■□□□ 1.6
CDX1-202ENST00000616154 NIP7Q9Y221 180 aaKnown RBP eCLIP25.08■■□□□ 1.6
CDX1-202ENST00000616154 KLRG2A4D1S0 409 aaPredicted RBP25.07■■□□□ 1.6
CDX1-202ENST00000616154 HTRA3P83110 453 aa25.07■■□□□ 1.6
CDX1-202ENST00000616154 NFE2L2Q16236 605 aa25.07■■□□□ 1.6
CDX1-202ENST00000616154 DPY19L2Q6NUT2 758 aa25.07■■□□□ 1.6
CDX1-202ENST00000616154 NUP98P52948 1817 aa25.06■■□□□ 1.6
CDX1-202ENST00000616154 TPTE2Q6XPS3 522 aa25.06■■□□□ 1.6
CDX1-202ENST00000616154 KLRG1Q96E93 195 aa25.06■■□□□ 1.6
CDX1-202ENST00000616154 POTECB2RU33 542 aa25.05■■□□□ 1.6
CDX1-202ENST00000616154 NPR1P16066 1061 aa25.05■■□□□ 1.6
CDX1-202ENST00000616154 HLFQ16534 295 aa25.04■■□□□ 1.6
CDX1-202ENST00000616154 C7orf43Q8WVR3 580 aa25.04■■□□□ 1.6
CDX1-202ENST00000616154 PNNQ9H307 717 aaKnown RBP25.04■■□□□ 1.6
CDX1-202ENST00000616154 EIF4A1P60842 406 aaKnown RBP25.03■■□□□ 1.6
CDX1-202ENST00000616154 MAPK8IP3Q9UPT6 1336 aa25.02■■□□□ 1.6
CDX1-202ENST00000616154 CCDC93Q567U6 631 aa25.01■■□□□ 1.59
CDX1-202ENST00000616154 JMYQ8N9B5 988 aa25.01■■□□□ 1.59
CDX1-202ENST00000616154 THUMPD2Q9BTF0 503 aaKnown RBP25.01■■□□□ 1.59
CDX1-202ENST00000616154 ERVV-1B6SEH8 477 aa25■■□□□ 1.59
CDX1-202ENST00000616154 MYBBP1AQ9BQG0 1328 aaKnown RBP24.99■■□□□ 1.59
CDX1-202ENST00000616154 ZNF316A6NFI3 1004 aaPredicted RBP24.99■■□□□ 1.59
CDX1-202ENST00000616154 FAM177BA6PVY3 158 aa24.99■■□□□ 1.59
CDX1-202ENST00000616154 MAP3K15Q6ZN16 1313 aa24.98■■□□□ 1.59
CDX1-202ENST00000616154 KIF6Q6ZMV9 814 aa24.97■■□□□ 1.59
CDX1-202ENST00000616154 NGEFQ8N5V2 710 aa24.97■■□□□ 1.59
CDX1-202ENST00000616154 NYXQ9GZU5 481 aa24.97■■□□□ 1.59
CDX1-202ENST00000616154 SCN4AP35499 1836 aa24.97■■□□□ 1.59
CDX1-202ENST00000616154 GTF2E1P29083 439 aaPredicted RBP24.96■■□□□ 1.59
CDX1-202ENST00000616154 FKBP4Q02790 459 aaKnown RBP eCLIP24.96■■□□□ 1.59
CDX1-202ENST00000616154 RRP7AQ9Y3A4 280 aaKnown RBP24.96■■□□□ 1.59
CDX1-202ENST00000616154 ABCC12Q96J65 1359 aa24.96■■□□□ 1.59
CDX1-202ENST00000616154 IBTKQ9P2D0 1353 aaPredicted RBP24.96■■□□□ 1.59
CDX1-202ENST00000616154 ERBB4Q15303 1308 aa24.95■■□□□ 1.59
CDX1-202ENST00000616154 DDNO94850 711 aaPredicted RBP24.95■■□□□ 1.58
CDX1-202ENST00000616154 ALDH1B1P30837 517 aa24.95■■□□□ 1.58
CDX1-202ENST00000616154 TTLL7Q6ZT98 887 aa24.95■■□□□ 1.58
CDX1-202ENST00000616154 RIC1Q4ADV7 1423 aa24.94■■□□□ 1.58
CDX1-202ENST00000616154 CRY2Q49AN0 593 aa24.94■■□□□ 1.58
CDX1-202ENST00000616154 RTKN2Q8IZC4 609 aa24.94■■□□□ 1.58
CDX1-202ENST00000616154 PCNTO95613 3336 aa24.93■■□□□ 1.58
CDX1-202ENST00000616154 MYL6BP14649 208 aa24.93■■□□□ 1.58
CDX1-202ENST00000616154 OLFM4Q6UX06 510 aa24.92■■□□□ 1.58
CDX1-202ENST00000616154 NUTM1Q86Y26 1132 aa24.92■■□□□ 1.58
CDX1-202ENST00000616154 L3MBTL3Q96JM7 780 aaPredicted RBP24.92■■□□□ 1.58
CDX1-202ENST00000616154 TSPYL4Q9UJ04 414 aa24.92■■□□□ 1.58
CDX1-202ENST00000616154 SNED1Q8TER0 1413 aa24.92■■□□□ 1.58
CDX1-202ENST00000616154 CHADLQ6NUI6 762 aa24.91■■□□□ 1.58
CDX1-202ENST00000616154 ZBTB3Q9H5J0 574 aa24.91■■□□□ 1.58
CDX1-202ENST00000616154 PRKRIP1Q9H875 184 aaPredicted RBP24.91■■□□□ 1.58
CDX1-202ENST00000616154 ZNF277Q9NRM2 450 aaPredicted RBP24.91■■□□□ 1.58
CDX1-202ENST00000616154 UBN2Q6ZU65 1347 aa24.91■■□□□ 1.58
CDX1-202ENST00000616154 IQCA1LA6NCM1 817 aa24.9■■□□□ 1.58
CDX1-202ENST00000616154 RIPK4P57078 832 aa24.9■■□□□ 1.58
CDX1-202ENST00000616154 BABAM1Q9NWV8 329 aa24.9■■□□□ 1.58
CDX1-202ENST00000616154 GPTP24298 496 aa24.89■■□□□ 1.58
CDX1-202ENST00000616154 ZNF34Q8IZ26 560 aa24.89■■□□□ 1.58
CDX1-202ENST00000616154 GIGYF2Q6Y7W6 1299 aaKnown RBP24.88■■□□□ 1.57
CDX1-202ENST00000616154 ZNF541Q9H0D2 1346 aa24.88■■□□□ 1.57
CDX1-202ENST00000616154 POTEIP0CG38 1075 aa24.87■■□□□ 1.57
CDX1-202ENST00000616154 POTEJP0CG39 1038 aa24.87■■□□□ 1.57
CDX1-202ENST00000616154 HOXA10P31260 410 aaPredicted RBP24.87■■□□□ 1.57
CDX1-202ENST00000616154 IARSP41252 1262 aaKnown RBP24.87■■□□□ 1.57
CDX1-202ENST00000616154 LMOD3Q0VAK6 560 aa24.87■■□□□ 1.57
CDX1-202ENST00000616154 SUSD4Q5VX71 490 aa24.87■■□□□ 1.57
CDX1-202ENST00000616154 LRP10Q7Z4F1 713 aa24.87■■□□□ 1.57
CDX1-202ENST00000616154 SYNE4Q8N205 404 aa24.87■■□□□ 1.57
CDX1-202ENST00000616154 PSMD1Q99460 953 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms