RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 KIAA1328Q86T90 577 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 CCDC102AQ96A19 550 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 PDCL3Q9H2J4 239 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 ORC3Q9UBD5 711 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-212ENST00000616140 POLR3DP05423 398 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-212ENST00000616140 CBX1P83916 185 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 KRT24Q2M2I5 525 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 LDHAL6AQ6ZMR3 332 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 DDX46Q7L014 1031 aaKnown RBP16.3■□□□□ 0.2
CPSF1-212ENST00000616140 ZSCAN29Q8IWY8 852 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-212ENST00000616140 CNNM3Q8NE01 707 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 SNX21Q969T3 373 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 CENPHQ9H3R5 247 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 ZBTB40Q9NUA8 1239 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 ZRANB1Q9UGI0 708 aa16.3■□□□□ 0.2
CPSF1-212ENST00000616140 ZSCAN12O43309 604 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 FAM193AP78312 1265 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 CTCFLQ8NI51 663 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-212ENST00000616140 ATP10BO94823 1461 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 GOLGA6L10A6NI86 522 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 ZSCAN22P10073 491 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-212ENST00000616140 RAB11FIP4Q86YS3 637 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 CHPF2Q9P2E5 772 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 MCM5P33992 734 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 LRSAM1Q6UWE0 723 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 ERICH4A6NGS2 130 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 IQCA1Q86XH1 822 aa16.29■□□□□ 0.2
CPSF1-212ENST00000616140 GOLGA8AA7E2F4 631 aa16.28■□□□□ 0.2
CPSF1-212ENST00000616140 MICU3Q86XE3 530 aa16.28■□□□□ 0.2
CPSF1-212ENST00000616140 PHACTR3Q96KR7 559 aa16.28■□□□□ 0.2
CPSF1-212ENST00000616140 RBM5P52756 815 aaKnown RBP eCLIP16.28■□□□□ 0.22e-6■□□□□ 9.9
CPSF1-212ENST00000616140 NUP160Q12769 1436 aa16.28■□□□□ 0.2
CPSF1-212ENST00000616140 KIF4BQ2VIQ3 1234 aa16.28■□□□□ 0.2
CPSF1-212ENST00000616140 CAVIN4Q5BKX8 364 aa16.28■□□□□ 0.2
CPSF1-212ENST00000616140 TXLNBQ8N3L3 684 aa16.28■□□□□ 0.2
CPSF1-212ENST00000616140 DCTPP1Q9H773 170 aa16.28■□□□□ 0.2
CPSF1-212ENST00000616140 ANKRD13DQ6ZTN6 518 aa16.27■□□□□ 0.2
CPSF1-212ENST00000616140 LRRC2Q9BYS8 371 aa16.27■□□□□ 0.2
CPSF1-212ENST00000616140 MKNK2Q9HBH9 465 aa16.27■□□□□ 0.2
CPSF1-212ENST00000616140 HMG20BQ9P0W2 317 aa16.27■□□□□ 0.2
CPSF1-212ENST00000616140 NUP153P49790 1475 aaKnown RBP16.27■□□□□ 0.2
CPSF1-212ENST00000616140 ANAPC15P60006 121 aa16.27■□□□□ 0.2
CPSF1-212ENST00000616140 IFNL2Q8IZJ0 200 aa16.27■□□□□ 0.2
CPSF1-212ENST00000616140 CPLX3Q8WVH0 158 aa16.27■□□□□ 0.2
CPSF1-212ENST00000616140 ERLIN2O94905 339 aa16.27■□□□□ 0.19
CPSF1-212ENST00000616140 EIF4A2Q14240 407 aaKnown RBP16.27■□□□□ 0.19
CPSF1-212ENST00000616140 PRDM10Q9NQV6 1147 aa16.27■□□□□ 0.19
CPSF1-212ENST00000616140 IARSP41252 1262 aaKnown RBP16.27■□□□□ 0.19
CPSF1-212ENST00000616140 FBXO3Q9UK99 471 aa16.27■□□□□ 0.19
CPSF1-212ENST00000616140 DENND4BO75064 1496 aaPredicted RBP16.26■□□□□ 0.19
CPSF1-212ENST00000616140 ANKRD18BA2A2Z9 1011 aa16.26■□□□□ 0.19
CPSF1-212ENST00000616140 RDXP35241 583 aaKnown RBP16.26■□□□□ 0.19
CPSF1-212ENST00000616140 ATP8B2P98198 1209 aa16.26■□□□□ 0.19
CPSF1-212ENST00000616140 ISM2Q6H9L7 571 aa16.26■□□□□ 0.19
CPSF1-212ENST00000616140 CCDC144CPQ8IYA2 1237 aa16.26■□□□□ 0.19
CPSF1-212ENST00000616140 CNPY2Q9Y2B0 182 aa16.26■□□□□ 0.19
CPSF1-212ENST00000616140 RBM8AQ9Y5S9 174 aaKnown RBP16.26■□□□□ 0.19
CPSF1-212ENST00000616140 CLCN1P35523 988 aa16.26■□□□□ 0.19
CPSF1-212ENST00000616140 STX1AQ16623 288 aa16.26■□□□□ 0.19
CPSF1-212ENST00000616140 CCDC191Q8NCU4 936 aa16.26■□□□□ 0.19
CPSF1-212ENST00000616140 TMEM132AQ24JP5 1023 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 TMC6Q7Z403 805 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 ZNF830Q96NB3 372 aaPredicted RBP16.25■□□□□ 0.19
CPSF1-212ENST00000616140 UVSSAQ2YD98 709 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 USP48Q86UV5 1035 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 CWC25Q9NXE8 425 aaPredicted RBP16.25■□□□□ 0.19
CPSF1-212ENST00000616140 NEMFO60524 1076 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 RNF41Q9H4P4 317 aaPredicted RBP16.25■□□□□ 0.19
CPSF1-212ENST00000616140 KIF5CO60282 957 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 HSP90AB3PQ58FF7 597 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 ANKRD24Q8TF21 1146 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 ZNF652Q9Y2D9 606 aa16.25■□□□□ 0.19
CPSF1-212ENST00000616140 SLC5A1P13866 664 aa16.24■□□□□ 0.19
CPSF1-212ENST00000616140 IQCEQ6IPM2 695 aa16.24■□□□□ 0.19
CPSF1-212ENST00000616140 CEP85Q6P2H3 762 aa16.24■□□□□ 0.19
CPSF1-212ENST00000616140 KRT28Q7Z3Y7 464 aa16.24■□□□□ 0.19
CPSF1-212ENST00000616140 SEPT11Q9NVA2 429 aaKnown RBP16.24■□□□□ 0.19
CPSF1-212ENST00000616140 SNRPA1P09661 255 aaKnown RBP16.24■□□□□ 0.19
CPSF1-212ENST00000616140 COPS6Q7L5N1 327 aa16.24■□□□□ 0.19
CPSF1-212ENST00000616140 ZGPATQ8N5A5 531 aaKnown RBP16.24■□□□□ 0.19
CPSF1-212ENST00000616140 PIK3C2GO75747 1445 aa16.24■□□□□ 0.19
CPSF1-212ENST00000616140 GSDMDP57764 484 aa16.24■□□□□ 0.19
CPSF1-212ENST00000616140 SSRP1Q08945 709 aaKnown RBP16.24■□□□□ 0.19
CPSF1-212ENST00000616140 CAVIN2O95810 425 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 PRIM1P49642 420 aaKnown RBP16.23■□□□□ 0.19
CPSF1-212ENST00000616140 TMEM67Q5HYA8 995 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 CRACR2AQ9BSW2 395 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 KIAA0754O94854 1291 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 CHRNA2Q15822 529 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 PLEKHM2Q8IWE5 1019 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 XAGE3Q8WTP9 111 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 GRM8O00222 908 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 SLC39A6Q13433 755 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 ZSCAN16Q9H4T2 348 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-212ENST00000616140 DACT1Q9NYF0 836 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 PLCH2O75038 1416 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 DNM1Q05193 864 aaKnown RBP16.23■□□□□ 0.19
CPSF1-212ENST00000616140 RAB3GAP1Q15042 981 aa16.23■□□□□ 0.19
CPSF1-212ENST00000616140 DZIP1Q86YF9 867 aaKnown RBP16.23■□□□□ 0.19
CPSF1-212ENST00000616140 ZNF397Q8NF99 534 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms