RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 ST5P78524 1137 aa27.62■■■□□ 2.01
TRAPPC3-208ENST00000616074 DICER1Q9UPY3 1922 aaKnown RBP27.62■■■□□ 2.01
TRAPPC3-208ENST00000616074 SLX4Q8IY92 1834 aa27.62■■■□□ 2.01
TRAPPC3-208ENST00000616074 NBPF26B4DH59 902 aa27.61■■■□□ 2.01
TRAPPC3-208ENST00000616074 FSTL1Q12841 308 aa27.61■■■□□ 2.01
TRAPPC3-208ENST00000616074 TAF7Q15545 349 aaPredicted RBP27.61■■■□□ 2.01
TRAPPC3-208ENST00000616074 NBPF10Q6P3W6 841 aaKnown RBP27.61■■■□□ 2.01
TRAPPC3-208ENST00000616074 NBPF15Q8N660 670 aa27.61■■■□□ 2.01
TRAPPC3-208ENST00000616074 MIS18AQ9NYP9 233 aa27.61■■■□□ 2.01
TRAPPC3-208ENST00000616074 GLTPD2A6NH11 291 aa27.6■■■□□ 2.01
TRAPPC3-208ENST00000616074 CLEC4GQ6UXB4 293 aa27.6■■■□□ 2.01
TRAPPC3-208ENST00000616074 DNAJC5GQ8N7S2 189 aa27.6■■■□□ 2.01
TRAPPC3-208ENST00000616074 ZNF652Q9Y2D9 606 aa27.59■■■□□ 2.01
TRAPPC3-208ENST00000616074 SRGNP10124 158 aa27.58■■■□□ 2.01
TRAPPC3-208ENST00000616074 NEFMP07197 916 aa27.57■■■□□ 2
TRAPPC3-208ENST00000616074 STYK1Q6J9G0 422 aa27.57■■■□□ 2
TRAPPC3-208ENST00000616074 NBPF5PQ86XG9 351 aaPredicted RBP27.57■■■□□ 2
TRAPPC3-208ENST00000616074 CNKSR1Q969H4 720 aa27.57■■■□□ 2
TRAPPC3-208ENST00000616074 PLEKHF1Q96S99 279 aa27.57■■■□□ 2
TRAPPC3-208ENST00000616074 HTRA3P83110 453 aa27.56■■■□□ 2
TRAPPC3-208ENST00000616074 MASTLQ96GX5 879 aa27.56■■■□□ 2
TRAPPC3-208ENST00000616074 PRPF40BQ6NWY9 871 aaKnown RBP27.55■■■□□ 2
TRAPPC3-208ENST00000616074 VEGFAP15692 232 aaPredicted RBP27.54■■■□□ 2
TRAPPC3-208ENST00000616074 SMC1BQ8NDV3 1235 aa27.54■■■□□ 2
TRAPPC3-208ENST00000616074 NIP7Q9Y221 180 aaKnown RBP eCLIP27.54■■■□□ 2
TRAPPC3-208ENST00000616074 LTBP3Q9NS15 1303 aa27.53■■■□□ 2
TRAPPC3-208ENST00000616074 RGL2O15211 777 aa27.53■■■□□ 2
TRAPPC3-208ENST00000616074 IFFO2Q5TF58 517 aa27.53■■■□□ 2
TRAPPC3-208ENST00000616074 TAOK3Q9H2K8 898 aa27.53■■■□□ 2
TRAPPC3-208ENST00000616074 NFE2L2Q16236 605 aa27.52■■■□□ 2
TRAPPC3-208ENST00000616074 HLFQ16534 295 aa27.52■■■□□ 2
TRAPPC3-208ENST00000616074 ERFEQ4G0M1 354 aa27.52■■■□□ 2
TRAPPC3-208ENST00000616074 PNISRQ8TF01 805 aaKnown RBP27.52■■■□□ 2
TRAPPC3-208ENST00000616074 THUMPD2Q9BTF0 503 aaKnown RBP27.52■■■□□ 2
TRAPPC3-208ENST00000616074 FAM177BA6PVY3 158 aa27.5■■□□□ 1.99
TRAPPC3-208ENST00000616074 TPTE2Q6XPS3 522 aa27.5■■□□□ 1.99
TRAPPC3-208ENST00000616074 NUP98P52948 1817 aa27.5■■□□□ 1.99
TRAPPC3-208ENST00000616074 POTECB2RU33 542 aa27.49■■□□□ 1.99
TRAPPC3-208ENST00000616074 EIF4A1P60842 406 aaKnown RBP27.49■■□□□ 1.99
TRAPPC3-208ENST00000616074 SOGA3Q5TF21 947 aa27.49■■□□□ 1.99
TRAPPC3-208ENST00000616074 DPY19L2Q6NUT2 758 aa27.49■■□□□ 1.99
TRAPPC3-208ENST00000616074 MAPK8IP3Q9UPT6 1336 aa27.48■■□□□ 1.99
TRAPPC3-208ENST00000616074 KLRG2A4D1S0 409 aaPredicted RBP27.48■■□□□ 1.99
TRAPPC3-208ENST00000616074 NPR1P16066 1061 aa27.48■■□□□ 1.99
TRAPPC3-208ENST00000616074 NGEFQ8N5V2 710 aa27.47■■□□□ 1.99
TRAPPC3-208ENST00000616074 C7orf43Q8WVR3 580 aa27.47■■□□□ 1.99
TRAPPC3-208ENST00000616074 KLRG1Q96E93 195 aa27.47■■□□□ 1.99
TRAPPC3-208ENST00000616074 PNNQ9H307 717 aaKnown RBP27.45■■□□□ 1.98
TRAPPC3-208ENST00000616074 CCDC93Q567U6 631 aa27.44■■□□□ 1.98
TRAPPC3-208ENST00000616074 RRP7AQ9Y3A4 280 aaKnown RBP27.44■■□□□ 1.98
TRAPPC3-208ENST00000616074 TTLL7Q6ZT98 887 aa27.43■■□□□ 1.98
TRAPPC3-208ENST00000616074 PCNTO95613 3336 aa27.43■■□□□ 1.98
TRAPPC3-208ENST00000616074 MAP3K15Q6ZN16 1313 aa27.42■■□□□ 1.98
TRAPPC3-208ENST00000616074 ERVV-1B6SEH8 477 aa27.42■■□□□ 1.98
TRAPPC3-208ENST00000616074 MYL6BP14649 208 aa27.42■■□□□ 1.98
TRAPPC3-208ENST00000616074 ABCC12Q96J65 1359 aa27.42■■□□□ 1.98
TRAPPC3-208ENST00000616074 DDNO94850 711 aaPredicted RBP27.41■■□□□ 1.98
TRAPPC3-208ENST00000616074 GTF2E1P29083 439 aaPredicted RBP27.41■■□□□ 1.98
TRAPPC3-208ENST00000616074 OLFM4Q6UX06 510 aa27.41■■□□□ 1.98
TRAPPC3-208ENST00000616074 KIF6Q6ZMV9 814 aa27.4■■□□□ 1.98
TRAPPC3-208ENST00000616074 JMYQ8N9B5 988 aa27.4■■□□□ 1.98
TRAPPC3-208ENST00000616074 FKBP4Q02790 459 aaKnown RBP eCLIP27.39■■□□□ 1.98
TRAPPC3-208ENST00000616074 RALBP1Q15311 655 aa27.39■■□□□ 1.98
TRAPPC3-208ENST00000616074 NUTM1Q86Y26 1132 aa27.39■■□□□ 1.98
TRAPPC3-208ENST00000616074 NYXQ9GZU5 481 aa27.38■■□□□ 1.97
TRAPPC3-208ENST00000616074 ZBTB3Q9H5J0 574 aa27.38■■□□□ 1.97
TRAPPC3-208ENST00000616074 TSPYL4Q9UJ04 414 aa27.38■■□□□ 1.97
TRAPPC3-208ENST00000616074 UBN2Q6ZU65 1347 aa27.38■■□□□ 1.97
TRAPPC3-208ENST00000616074 ALDH1B1P30837 517 aa27.37■■□□□ 1.97
TRAPPC3-208ENST00000616074 RIPK4P57078 832 aa27.37■■□□□ 1.97
TRAPPC3-208ENST00000616074 GPTP24298 496 aa27.36■■□□□ 1.97
TRAPPC3-208ENST00000616074 CRY2Q49AN0 593 aa27.36■■□□□ 1.97
TRAPPC3-208ENST00000616074 ZNF277Q9NRM2 450 aaPredicted RBP27.36■■□□□ 1.97
TRAPPC3-208ENST00000616074 ERBB4Q15303 1308 aa27.36■■□□□ 1.97
TRAPPC3-208ENST00000616074 SCN4AP35499 1836 aa27.35■■□□□ 1.97
TRAPPC3-208ENST00000616074 RTKN2Q8IZC4 609 aa27.35■■□□□ 1.97
TRAPPC3-208ENST00000616074 IBTKQ9P2D0 1353 aaPredicted RBP27.35■■□□□ 1.97
TRAPPC3-208ENST00000616074 POTEIP0CG38 1075 aa27.34■■□□□ 1.97
TRAPPC3-208ENST00000616074 POTEJP0CG39 1038 aa27.34■■□□□ 1.97
TRAPPC3-208ENST00000616074 RIC1Q4ADV7 1423 aa27.33■■□□□ 1.97
TRAPPC3-208ENST00000616074 SNED1Q8TER0 1413 aa27.33■■□□□ 1.97
TRAPPC3-208ENST00000616074 SUSD4Q5VX71 490 aa27.33■■□□□ 1.97
TRAPPC3-208ENST00000616074 ZNF541Q9H0D2 1346 aa27.33■■□□□ 1.97
TRAPPC3-208ENST00000616074 TMPOP42166 694 aaKnown RBP27.32■■□□□ 1.96
TRAPPC3-208ENST00000616074 CHADLQ6NUI6 762 aa27.32■■□□□ 1.96
TRAPPC3-208ENST00000616074 GIGYF2Q6Y7W6 1299 aaKnown RBP27.32■■□□□ 1.96
TRAPPC3-208ENST00000616074 LRP10Q7Z4F1 713 aa27.32■■□□□ 1.96
TRAPPC3-208ENST00000616074 ZNF34Q8IZ26 560 aa27.32■■□□□ 1.96
TRAPPC3-208ENST00000616074 PDIA6Q15084 440 aa27.31■■□□□ 1.96
TRAPPC3-208ENST00000616074 L3MBTL3Q96JM7 780 aaPredicted RBP27.31■■□□□ 1.96
TRAPPC3-208ENST00000616074 NTSR2O95665 410 aa27.3■■□□□ 1.96
TRAPPC3-208ENST00000616074 EIF2S2P20042 333 aaKnown RBP27.3■■□□□ 1.96
TRAPPC3-208ENST00000616074 SYNE4Q8N205 404 aa27.3■■□□□ 1.96
TRAPPC3-208ENST00000616074 IQCA1LA6NCM1 817 aa27.29■■□□□ 1.96
TRAPPC3-208ENST00000616074 IARSP41252 1262 aaKnown RBP27.29■■□□□ 1.96
TRAPPC3-208ENST00000616074 LMOD3Q0VAK6 560 aa27.29■■□□□ 1.96
TRAPPC3-208ENST00000616074 DDX10Q13206 875 aaKnown RBP27.29■■□□□ 1.96
TRAPPC3-208ENST00000616074 RPGRQ92834 1020 aaKnown RBP27.29■■□□□ 1.96
TRAPPC3-208ENST00000616074 BABAM1Q9NWV8 329 aa27.29■■□□□ 1.96
TRAPPC3-208ENST00000616074 MYBBP1AQ9BQG0 1328 aaKnown RBP27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 273.1 ms