RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 THEMISQ8N1K5 641 aaPredicted RBP12.16□□□□□ -0.46
VPS39-214ENST00000614932 CCDC191Q8NCU4 936 aa12.16□□□□□ -0.46
VPS39-214ENST00000614932 NEK11Q8NG66 645 aa12.16□□□□□ -0.46
VPS39-214ENST00000614932 RBM28Q9NW13 759 aaKnown RBP12.16□□□□□ -0.46
VPS39-214ENST00000614932 NSFL1CQ9UNZ2 370 aaKnown RBP12.16□□□□□ -0.46
VPS39-214ENST00000614932 CDC42BPGQ6DT37 1551 aa12.16□□□□□ -0.46
VPS39-214ENST00000614932 VAMP4O75379 141 aa12.16□□□□□ -0.46
VPS39-214ENST00000614932 TNNT1P13805 278 aa12.16□□□□□ -0.46
VPS39-214ENST00000614932 SYAP1Q96A49 352 aaPredicted RBP12.16□□□□□ -0.46
VPS39-214ENST00000614932 SRLQ86TD4 932 aa12.15□□□□□ -0.46
VPS39-214ENST00000614932 KCNF1Q9H3M0 494 aa12.15□□□□□ -0.46
VPS39-214ENST00000614932 TECPR2O15040 1411 aa12.15□□□□□ -0.46
VPS39-214ENST00000614932 NLRP6P59044 892 aa12.15□□□□□ -0.46
VPS39-214ENST00000614932 TWISTNBQ3B726 338 aaPredicted RBP12.15□□□□□ -0.46
VPS39-214ENST00000614932 SLFNL1Q499Z3 407 aa12.15□□□□□ -0.46
VPS39-214ENST00000614932 IL16Q14005 1332 aa12.15□□□□□ -0.46
VPS39-214ENST00000614932 AMPHP49418 695 aa12.14□□□□□ -0.47
VPS39-214ENST00000614932 ZSCAN26Q16670 478 aa12.14□□□□□ -0.47
VPS39-214ENST00000614932 SWT1Q5T5J6 900 aaKnown RBP12.14□□□□□ -0.47
VPS39-214ENST00000614932 DDX19BQ9UMR2 479 aa12.14□□□□□ -0.47
VPS39-214ENST00000614932 MAP3K19Q56UN5 1328 aa12.14□□□□□ -0.47
VPS39-214ENST00000614932 GNAI1P63096 354 aa12.14□□□□□ -0.47
VPS39-214ENST00000614932 FBXO38Q6PIJ6 1188 aa12.14□□□□□ -0.47
VPS39-214ENST00000614932 RRP15Q9Y3B9 282 aaKnown RBP12.14□□□□□ -0.47
VPS39-214ENST00000614932 LRRFIP2Q9Y608 721 aaKnown RBP12.14□□□□□ -0.47
VPS39-214ENST00000614932 PLEKHG3A1L390 1219 aa12.13□□□□□ -0.47
VPS39-214ENST00000614932 LRCH2Q5VUJ6 765 aa12.13□□□□□ -0.47
VPS39-214ENST00000614932 CWC22Q9HCG8 908 aaKnown RBP12.13□□□□□ -0.47
VPS39-214ENST00000614932 ATP6V1AP38606 617 aa12.13□□□□□ -0.47
VPS39-214ENST00000614932 PACS2Q86VP3 889 aa12.13□□□□□ -0.47
VPS39-214ENST00000614932 RBM42Q9BTD8 480 aaKnown RBP12.13□□□□□ -0.47
VPS39-214ENST00000614932 TBX22Q9Y458 520 aa12.13□□□□□ -0.47
VPS39-214ENST00000614932 USP6P35125 1406 aa12.13□□□□□ -0.47
VPS39-214ENST00000614932 PPP1R12AO14974 1030 aaPredicted RBP12.12□□□□□ -0.47
VPS39-214ENST00000614932 IPO8O15397 1037 aaKnown RBP12.12□□□□□ -0.47
VPS39-214ENST00000614932 CT47B1P0C2W7 299 aaPredicted RBP12.12□□□□□ -0.47
VPS39-214ENST00000614932 GPS2Q13227 327 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 NBPF11Q86T75 865 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 USHBP1Q8N6Y0 703 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 ZNF592Q92610 1267 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 LNPKQ9C0E8 428 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 AATKQ6ZMQ8 1374 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 TPM4P67936 248 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 PKP1Q13835 747 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 NBPF9Q3BBW0 867 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 SUGP1Q8IWZ8 645 aaKnown RBP12.12□□□□□ -0.47
VPS39-214ENST00000614932 MRPL50Q8N5N7 158 aaKnown RBP12.12□□□□□ -0.47
VPS39-214ENST00000614932 NECTIN2Q92692 538 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 CDK12Q9NYV4 1490 aaPredicted RBP12.12□□□□□ -0.47
VPS39-214ENST00000614932 C3P01024 1663 aa12.12□□□□□ -0.47
VPS39-214ENST00000614932 CALRP27797 417 aaKnown RBP12.11□□□□□ -0.47
VPS39-214ENST00000614932 OS9Q13438 667 aaPredicted RBP12.11□□□□□ -0.47
VPS39-214ENST00000614932 ABTB2Q8N961 1025 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 GTF3C6Q969F1 213 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 FAM212AQ96EL1 285 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 CFAP44Q96MT7 982 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 IFT57Q9NWB7 429 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 PLEKHG2Q9H7P9 1386 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 KDM4AO75164 1064 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 MAGEA9P43362 315 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 C16orf45Q96MC5 204 aaPredicted RBP12.11□□□□□ -0.47
VPS39-214ENST00000614932 ZBTB40Q9NUA8 1239 aa12.11□□□□□ -0.47
VPS39-214ENST00000614932 HTATSF1O43719 755 aaKnown RBP12.1□□□□□ -0.47
VPS39-214ENST00000614932 E2F4Q16254 413 aa12.1□□□□□ -0.47
VPS39-214ENST00000614932 MCTP2Q6DN12 878 aa12.1□□□□□ -0.47
VPS39-214ENST00000614932 NBPF10Q6P3W6 841 aaKnown RBP12.1□□□□□ -0.47
VPS39-214ENST00000614932 MAP2K2P36507 400 aa12.1□□□□□ -0.47
VPS39-214ENST00000614932 SSR1P43307 286 aaKnown RBP12.1□□□□□ -0.47
VPS39-214ENST00000614932 LMOD2Q6P5Q4 547 aa12.1□□□□□ -0.47
VPS39-214ENST00000614932 FBXO18Q8NFZ0 1043 aa12.1□□□□□ -0.47
VPS39-214ENST00000614932 PTPRCP08575 1304 aa12.1□□□□□ -0.47
VPS39-214ENST00000614932 ITSN1Q15811 1721 aa12.1□□□□□ -0.47
VPS39-214ENST00000614932 MTHFSDQ2M296 383 aaKnown RBP12.1□□□□□ -0.47
VPS39-214ENST00000614932 RNF20Q5VTR2 975 aa12.1□□□□□ -0.47
VPS39-214ENST00000614932 RTF1Q92541 710 aaKnown RBP12.1□□□□□ -0.47
VPS39-214ENST00000614932 TRDNQ13061 729 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 RABEP1Q15276 862 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 ALDH1L2Q3SY69 923 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 ANKRD20A12PQ8NF67 263 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 GOLGA5Q8TBA6 731 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 MON2Q7Z3U7 1717 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 TTC36A6NLP5 189 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 APBB1O00213 710 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 EYA1Q99502 592 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 FHOD1Q9Y613 1164 aa12.09□□□□□ -0.47
VPS39-214ENST00000614932 RGPD8O14715 1765 aaPredicted RBP12.08□□□□□ -0.48
VPS39-214ENST00000614932 OVOS2A0A0J9YW53 1432 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 OVOS2Q6IE36 1432 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 CCDC196A0A1B0GTZ2 297 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 ERO1AQ96HE7 468 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 CEP89Q96ST8 783 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 ZDHHC9Q9Y397 364 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 KNDC1Q76NI1 1749 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 ANKRD45Q5TZF3 282 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 RPAINQ86UA6 219 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 SMARCE1Q969G3 411 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 ZNF215Q9UL58 517 aaPredicted RBP12.08□□□□□ -0.48
VPS39-214ENST00000614932 FER1L4A9Z1Z3 1794 aa12.08□□□□□ -0.48
VPS39-214ENST00000614932 KIF3CO14782 793 aa12.07□□□□□ -0.48
VPS39-214ENST00000614932 PLA2G4AP47712 749 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms