RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 ST5P78524 1137 aa23.73■■□□□ 1.39
SHKBP1-227ENST00000602011 SOGA3Q5TF21 947 aa23.73■■□□□ 1.39
SHKBP1-227ENST00000602011 DZIP3Q86Y13 1208 aaKnown RBP23.73■■□□□ 1.39
SHKBP1-227ENST00000602011 CNBD1Q8NA66 436 aa23.73■■□□□ 1.39
SHKBP1-227ENST00000602011 C21orf2O43822 256 aa23.72■■□□□ 1.39
SHKBP1-227ENST00000602011 COL11A2P13942 1736 aaPredicted RBP23.72■■□□□ 1.39
SHKBP1-227ENST00000602011 STYK1Q6J9G0 422 aa23.71■■□□□ 1.39
SHKBP1-227ENST00000602011 USP16Q9Y5T5 823 aa23.71■■□□□ 1.39
SHKBP1-227ENST00000602011 KCNQ3O43525 872 aa23.7■■□□□ 1.38
SHKBP1-227ENST00000602011 TAF7Q15545 349 aaPredicted RBP23.7■■□□□ 1.38
SHKBP1-227ENST00000602011 SCN7AQ01118 1682 aa23.7■■□□□ 1.38
SHKBP1-227ENST00000602011 LTBP3Q9NS15 1303 aa23.69■■□□□ 1.38
SHKBP1-227ENST00000602011 PNISRQ8TF01 805 aaKnown RBP23.69■■□□□ 1.38
SHKBP1-227ENST00000602011 MASTLQ96GX5 879 aa23.69■■□□□ 1.38
SHKBP1-227ENST00000602011 PIP4K2AP48426 406 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-227ENST00000602011 PNNQ9H307 717 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-227ENST00000602011 SRGNP10124 158 aa23.67■■□□□ 1.38
SHKBP1-227ENST00000602011 TPTE2Q6XPS3 522 aa23.67■■□□□ 1.38
SHKBP1-227ENST00000602011 MCM10Q7L590 875 aa23.67■■□□□ 1.38
SHKBP1-227ENST00000602011 SIPA1L3O60292 1781 aaPredicted RBP23.67■■□□□ 1.38
SHKBP1-227ENST00000602011 ERFEQ4G0M1 354 aa23.66■■□□□ 1.38
SHKBP1-227ENST00000602011 NBPF5PQ86XG9 351 aaPredicted RBP23.66■■□□□ 1.38
SHKBP1-227ENST00000602011 TNS4Q8IZW8 715 aa23.66■■□□□ 1.38
SHKBP1-227ENST00000602011 FER1L6Q2WGJ9 1857 aa23.65■■□□□ 1.38
SHKBP1-227ENST00000602011 POTEIP0CG38 1075 aa23.65■■□□□ 1.38
SHKBP1-227ENST00000602011 POTEJP0CG39 1038 aa23.65■■□□□ 1.38
SHKBP1-227ENST00000602011 HSPA1AP0DMV8 641 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-227ENST00000602011 HSPA1BP0DMV9 641 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-227ENST00000602011 TAOK3Q9H2K8 898 aa23.65■■□□□ 1.38
SHKBP1-227ENST00000602011 CACNA1SQ13698 1873 aa23.64■■□□□ 1.38
SHKBP1-227ENST00000602011 SLX4Q8IY92 1834 aa23.64■■□□□ 1.38
SHKBP1-227ENST00000602011 PRAMEF22A3QJZ6 481 aa23.63■■□□□ 1.37
SHKBP1-227ENST00000602011 KLRG2A4D1S0 409 aaPredicted RBP23.63■■□□□ 1.37
SHKBP1-227ENST00000602011 DDNO94850 711 aaPredicted RBP23.62■■□□□ 1.37
SHKBP1-227ENST00000602011 NPR1P16066 1061 aa23.62■■□□□ 1.37
SHKBP1-227ENST00000602011 DICER1Q9UPY3 1922 aaKnown RBP23.62■■□□□ 1.37
SHKBP1-227ENST00000602011 PRPF40BQ6NWY9 871 aaKnown RBP23.61■■□□□ 1.37
SHKBP1-227ENST00000602011 NIP7Q9Y221 180 aaKnown RBP eCLIP23.6■■□□□ 1.37
SHKBP1-227ENST00000602011 ALDH1B1P30837 517 aa23.59■■□□□ 1.37
SHKBP1-227ENST00000602011 DCTN1Q14203 1278 aa23.59■■□□□ 1.37
SHKBP1-227ENST00000602011 BCORQ6W2J9 1755 aa23.58■■□□□ 1.37
SHKBP1-227ENST00000602011 NBPF26B4DH59 902 aa23.58■■□□□ 1.37
SHKBP1-227ENST00000602011 ERVV-1B6SEH8 477 aa23.58■■□□□ 1.37
SHKBP1-227ENST00000602011 CCDC93Q567U6 631 aa23.58■■□□□ 1.37
SHKBP1-227ENST00000602011 NBPF10Q6P3W6 841 aaKnown RBP23.58■■□□□ 1.37
SHKBP1-227ENST00000602011 NBPF15Q8N660 670 aa23.58■■□□□ 1.37
SHKBP1-227ENST00000602011 C7orf43Q8WVR3 580 aa23.58■■□□□ 1.37
SHKBP1-227ENST00000602011 MKRN1Q9UHC7 482 aaKnown RBP23.58■■□□□ 1.37
SHKBP1-227ENST00000602011 GTF2E1P29083 439 aaPredicted RBP23.57■■□□□ 1.36
SHKBP1-227ENST00000602011 RTKN2Q8IZC4 609 aa23.57■■□□□ 1.36
SHKBP1-227ENST00000602011 NYXQ9GZU5 481 aa23.57■■□□□ 1.36
SHKBP1-227ENST00000602011 IQCA1LA6NCM1 817 aa23.56■■□□□ 1.36
SHKBP1-227ENST00000602011 CHADLQ6NUI6 762 aa23.56■■□□□ 1.36
SHKBP1-227ENST00000602011 OLFM4Q6UX06 510 aa23.56■■□□□ 1.36
SHKBP1-227ENST00000602011 FAM177BA6PVY3 158 aa23.54■■□□□ 1.36
SHKBP1-227ENST00000602011 NFE2L2Q16236 605 aa23.54■■□□□ 1.36
SHKBP1-227ENST00000602011 PLEKHF1Q96S99 279 aa23.54■■□□□ 1.36
SHKBP1-227ENST00000602011 GRIPAP1Q4V328 841 aa23.53■■□□□ 1.36
SHKBP1-227ENST00000602011 CC2D2BQ6DHV5 1058 aa23.53■■□□□ 1.36
SHKBP1-227ENST00000602011 ARFGEF2Q9Y6D5 1785 aa23.52■■□□□ 1.36
SHKBP1-227ENST00000602011 EIF4A1P60842 406 aaKnown RBP23.52■■□□□ 1.36
SHKBP1-227ENST00000602011 FKBP4Q02790 459 aaKnown RBP eCLIP23.52■■□□□ 1.36
SHKBP1-227ENST00000602011 MIS18AQ9NYP9 233 aa23.52■■□□□ 1.36
SHKBP1-227ENST00000602011 ERBB4Q15303 1308 aa23.52■■□□□ 1.36
SHKBP1-227ENST00000602011 MAPK8IP3Q9UPT6 1336 aa23.52■■□□□ 1.36
SHKBP1-227ENST00000602011 KIF6Q6ZMV9 814 aa23.51■■□□□ 1.35
SHKBP1-227ENST00000602011 L3MBTL3Q96JM7 780 aaPredicted RBP23.51■■□□□ 1.35
SHKBP1-227ENST00000602011 ZNF277Q9NRM2 450 aaPredicted RBP23.51■■□□□ 1.35
SHKBP1-227ENST00000602011 CREBZFQ9NS37 354 aa23.51■■□□□ 1.35
SHKBP1-227ENST00000602011 BABAM1Q9NWV8 329 aa23.51■■□□□ 1.35
SHKBP1-227ENST00000602011 HLFQ16534 295 aa23.5■■□□□ 1.35
SHKBP1-227ENST00000602011 MAP3K15Q6ZN16 1313 aa23.5■■□□□ 1.35
SHKBP1-227ENST00000602011 ZNF541Q9H0D2 1346 aa23.5■■□□□ 1.35
SHKBP1-227ENST00000602011 CRY2Q49AN0 593 aa23.48■■□□□ 1.35
SHKBP1-227ENST00000602011 TAF1DQ9H5J8 278 aaPredicted RBP23.48■■□□□ 1.35
SHKBP1-227ENST00000602011 RALBP1Q15311 655 aa23.47■■□□□ 1.35
SHKBP1-227ENST00000602011 EAPPQ56P03 285 aaPredicted RBP23.47■■□□□ 1.35
SHKBP1-227ENST00000602011 RRP7AQ9Y3A4 280 aaKnown RBP23.47■■□□□ 1.35
SHKBP1-227ENST00000602011 LDHDQ86WU2 507 aa23.46■■□□□ 1.35
SHKBP1-227ENST00000602011 PSMD1Q99460 953 aa23.46■■□□□ 1.35
SHKBP1-227ENST00000602011 IBTKQ9P2D0 1353 aaPredicted RBP23.46■■□□□ 1.35
SHKBP1-227ENST00000602011 PASKQ96RG2 1323 aa23.45■■□□□ 1.34
SHKBP1-227ENST00000602011 FOXN1O15353 648 aa23.45■■□□□ 1.34
SHKBP1-227ENST00000602011 HOXA10P31260 410 aaPredicted RBP23.45■■□□□ 1.34
SHKBP1-227ENST00000602011 LMOD3Q0VAK6 560 aa23.45■■□□□ 1.34
SHKBP1-227ENST00000602011 NGEFQ8N5V2 710 aa23.45■■□□□ 1.34
SHKBP1-227ENST00000602011 CNTNAP1P78357 1384 aa23.44■■□□□ 1.34
SHKBP1-227ENST00000602011 IARSP41252 1262 aaKnown RBP23.43■■□□□ 1.34
SHKBP1-227ENST00000602011 PARP10Q53GL7 1025 aa23.43■■□□□ 1.34
SHKBP1-227ENST00000602011 GIGYF2Q6Y7W6 1299 aaKnown RBP23.43■■□□□ 1.34
SHKBP1-227ENST00000602011 PPP1R42Q7Z4L9 355 aa23.43■■□□□ 1.34
SHKBP1-227ENST00000602011 PNMA8AQ86V59 439 aaPredicted RBP23.43■■□□□ 1.34
SHKBP1-227ENST00000602011 SYNE4Q8N205 404 aa23.43■■□□□ 1.34
SHKBP1-227ENST00000602011 JDP2Q8WYK2 163 aa23.43■■□□□ 1.34
SHKBP1-227ENST00000602011 RPGRQ92834 1020 aaKnown RBP23.43■■□□□ 1.34
SHKBP1-227ENST00000602011 RIC1Q4ADV7 1423 aa23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 FZD9O00144 591 aa23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 ITGBL1O95965 494 aaPredicted RBP23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 SLC51AQ86UW1 340 aa23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 ZNF34Q8IZ26 560 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms