RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 DLG5Q8TDM6 1919 aa11.55□□□□□ -0.56
TRIM28-214ENST00000600840 WDR43Q15061 677 aaKnown RBP eCLIP11.55□□□□□ -0.56
TRIM28-214ENST00000600840 FAM9BQ8IZU0 186 aa11.55□□□□□ -0.56
TRIM28-214ENST00000600840 RUNDC1Q96C34 613 aa11.55□□□□□ -0.56
TRIM28-214ENST00000600840 ABHD8Q96I13 439 aa11.55□□□□□ -0.56
TRIM28-214ENST00000600840 TBC1D2BQ9UPU7 963 aa11.55□□□□□ -0.56
TRIM28-214ENST00000600840 USP16Q9Y5T5 823 aa11.55□□□□□ -0.56
TRIM28-214ENST00000600840 ANKRD31Q8N7Z5 1873 aa11.55□□□□□ -0.56
TRIM28-214ENST00000600840 BTBD11A6QL63 1104 aa11.54□□□□□ -0.56
TRIM28-214ENST00000600840 SERPINB2P05120 415 aa11.54□□□□□ -0.56
TRIM28-214ENST00000600840 CTCFP49711 727 aaPredicted RBP11.54□□□□□ -0.56
TRIM28-214ENST00000600840 NCBP3Q53F19 620 aaKnown RBP11.54□□□□□ -0.56
TRIM28-214ENST00000600840 TBC1D9BQ66K14 1250 aa11.54□□□□□ -0.56
TRIM28-214ENST00000600840 CHADLQ6NUI6 762 aa11.54□□□□□ -0.56
TRIM28-214ENST00000600840 BICDL1Q6ZP65 573 aa11.54□□□□□ -0.56
TRIM28-214ENST00000600840 CCDC24Q8N4L8 307 aa11.54□□□□□ -0.56
TRIM28-214ENST00000600840 CACNA1SQ13698 1873 aa11.54□□□□□ -0.56
TRIM28-214ENST00000600840 FER1L6Q2WGJ9 1857 aa11.54□□□□□ -0.56
TRIM28-214ENST00000600840 SCN7AQ01118 1682 aa11.53□□□□□ -0.56
TRIM28-214ENST00000600840 COL11A2P13942 1736 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-214ENST00000600840 STARD3NLO95772 234 aa11.53□□□□□ -0.56
TRIM28-214ENST00000600840 TMPOP42166 694 aaKnown RBP11.53□□□□□ -0.56
TRIM28-214ENST00000600840 VEGFBP49765 207 aa11.53□□□□□ -0.56
TRIM28-214ENST00000600840 CCDC146Q8IYE0 955 aa11.53□□□□□ -0.56
TRIM28-214ENST00000600840 AIDAQ96BJ3 306 aa11.53□□□□□ -0.56
TRIM28-214ENST00000600840 FMNL2Q96PY5 1086 aa11.53□□□□□ -0.56
TRIM28-214ENST00000600840 PNNQ9H307 717 aaKnown RBP11.53□□□□□ -0.56
TRIM28-214ENST00000600840 ZNF219Q9P2Y4 722 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-214ENST00000600840 ZNF330Q9Y3S2 320 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-214ENST00000600840 APAF1O14727 1248 aa11.52□□□□□ -0.57
TRIM28-214ENST00000600840 DPY19L2Q6NUT2 758 aa11.52□□□□□ -0.57
TRIM28-214ENST00000600840 TTLL6Q8N841 843 aa11.52□□□□□ -0.57
TRIM28-214ENST00000600840 MIS18AQ9NYP9 233 aa11.52□□□□□ -0.57
TRIM28-214ENST00000600840 TRIM35Q9UPQ4 493 aa11.52□□□□□ -0.57
TRIM28-214ENST00000600840 DDNO94850 711 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-214ENST00000600840 CAMTA2O94983 1202 aa11.51□□□□□ -0.57
TRIM28-214ENST00000600840 HSPA8P11142 646 aaKnown RBP11.51□□□□□ -0.57
TRIM28-214ENST00000600840 NFE2L2Q16236 605 aa11.51□□□□□ -0.57
TRIM28-214ENST00000600840 ERFEQ4G0M1 354 aa11.51□□□□□ -0.57
TRIM28-214ENST00000600840 C2CD5Q86YS7 1000 aa11.51□□□□□ -0.57
TRIM28-214ENST00000600840 WBP1LQ9NX94 342 aa11.51□□□□□ -0.57
TRIM28-214ENST00000600840 PCDH10Q9P2E7 1040 aa11.51□□□□□ -0.57
TRIM28-214ENST00000600840 PASKQ96RG2 1323 aa11.51□□□□□ -0.57
TRIM28-214ENST00000600840 BCORQ6W2J9 1755 aa11.51□□□□□ -0.57
TRIM28-214ENST00000600840 NBPF26B4DH59 902 aa11.5□□□□□ -0.57
TRIM28-214ENST00000600840 IL6STP40189 918 aaPredicted RBP11.5□□□□□ -0.57
TRIM28-214ENST00000600840 NBPF10Q6P3W6 841 aaKnown RBP11.5□□□□□ -0.57
TRIM28-214ENST00000600840 NBPF15Q8N660 670 aa11.5□□□□□ -0.57
TRIM28-214ENST00000600840 THUMPD2Q9BTF0 503 aaKnown RBP11.5□□□□□ -0.57
TRIM28-214ENST00000600840 TEX13AQ9BXU3 409 aaPredicted RBP11.5□□□□□ -0.57
TRIM28-214ENST00000600840 A0A087WZG4 1122 aa11.49□□□□□ -0.57
TRIM28-214ENST00000600840 CCDC85CA6NKD9 419 aa11.49□□□□□ -0.57
TRIM28-214ENST00000600840 HTATSF1O43719 755 aaKnown RBP11.49□□□□□ -0.57
TRIM28-214ENST00000600840 C21orf2O43822 256 aa11.49□□□□□ -0.57
TRIM28-214ENST00000600840 MLLT1Q03111 559 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-214ENST00000600840 PRR5LQ6MZQ0 368 aa11.49□□□□□ -0.57
TRIM28-214ENST00000600840 RTF1Q92541 710 aaKnown RBP11.49□□□□□ -0.57
TRIM28-214ENST00000600840 ZNF521Q96K83 1311 aa11.49□□□□□ -0.57
TRIM28-214ENST00000600840 RIPK4P57078 832 aa11.48□□□□□ -0.57
TRIM28-214ENST00000600840 CCDC27Q2M243 656 aa11.48□□□□□ -0.57
TRIM28-214ENST00000600840 DZIP3Q86Y13 1208 aaKnown RBP11.48□□□□□ -0.57
TRIM28-214ENST00000600840 RRP7AQ9Y3A4 280 aaKnown RBP11.48□□□□□ -0.57
TRIM28-214ENST00000600840 KDM3BQ7LBC6 1761 aa11.48□□□□□ -0.57
TRIM28-214ENST00000600840 SLX4Q8IY92 1834 aa11.48□□□□□ -0.57
TRIM28-214ENST00000600840 SCN4AP35499 1836 aa11.47□□□□□ -0.57
TRIM28-214ENST00000600840 ADAMTSL1Q8N6G6 1762 aa11.47□□□□□ -0.57
TRIM28-214ENST00000600840 TMEM88BA6NKF7 163 aa11.47□□□□□ -0.57
TRIM28-214ENST00000600840 H0YIN7 160 aa11.47□□□□□ -0.57
TRIM28-214ENST00000600840 ITGBL1O95965 494 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-214ENST00000600840 SNRPA1P09661 255 aaKnown RBP11.47□□□□□ -0.57
TRIM28-214ENST00000600840 TAF7Q15545 349 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-214ENST00000600840 ZNF622Q969S3 477 aaKnown RBP eCLIP11.47□□□□□ -0.57
TRIM28-214ENST00000600840 MAPK8IP3Q9UPT6 1336 aa11.46□□□□□ -0.57
TRIM28-214ENST00000600840 NGEFQ8N5V2 710 aa11.46□□□□□ -0.57
TRIM28-214ENST00000600840 HLFQ16534 295 aa11.45□□□□□ -0.58
TRIM28-214ENST00000600840 EAPPQ56P03 285 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-214ENST00000600840 LDHDQ86WU2 507 aa11.45□□□□□ -0.58
TRIM28-214ENST00000600840 WWC1Q8IX03 1113 aa11.45□□□□□ -0.58
TRIM28-214ENST00000600840 SETDB2Q96T68 719 aa11.45□□□□□ -0.58
TRIM28-214ENST00000600840 BRIP1Q9BX63 1249 aa11.45□□□□□ -0.58
TRIM28-214ENST00000600840 TAF1DQ9H5J8 278 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-214ENST00000600840 LAMB4A4D0S4 1761 aa11.45□□□□□ -0.58
TRIM28-214ENST00000600840 THSD7BQ9C0I4 1608 aa11.45□□□□□ -0.58
TRIM28-214ENST00000600840 ARFGEF2Q9Y6D5 1785 aa11.44□□□□□ -0.58
TRIM28-214ENST00000600840 ZNF853P0CG23 659 aa11.44□□□□□ -0.58
TRIM28-214ENST00000600840 RGS19P49795 217 aa11.44□□□□□ -0.58
TRIM28-214ENST00000600840 EIF4A1P60842 406 aaKnown RBP11.44□□□□□ -0.58
TRIM28-214ENST00000600840 TAOK3Q9H2K8 898 aa11.44□□□□□ -0.58
TRIM28-214ENST00000600840 WDR33Q9C0J8 1336 aaKnown RBP11.43□□□□□ -0.58
TRIM28-214ENST00000600840 RASSF10A6NK89 507 aa11.43□□□□□ -0.58
TRIM28-214ENST00000600840 NEFMP07197 916 aa11.43□□□□□ -0.58
TRIM28-214ENST00000600840 NEUROD2Q15784 382 aa11.43□□□□□ -0.58
TRIM28-214ENST00000600840 DEFB115Q30KQ5 88 aa11.43□□□□□ -0.58
TRIM28-214ENST00000600840 CNBD1Q8NA66 436 aa11.43□□□□□ -0.58
TRIM28-214ENST00000600840 TSKSQ9UJT2 592 aa11.43□□□□□ -0.58
TRIM28-214ENST00000600840 CLEC11AQ9Y240 323 aa11.43□□□□□ -0.58
TRIM28-214ENST00000600840 NUP98P52948 1817 aa11.42□□□□□ -0.58
TRIM28-214ENST00000600840 ZNF541Q9H0D2 1346 aa11.42□□□□□ -0.58
TRIM28-214ENST00000600840 LTBP3Q9NS15 1303 aa11.42□□□□□ -0.58
TRIM28-214ENST00000600840 IQCA1LA6NCM1 817 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms