RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ADCY9O60503 1353 aa19.52■□□□□ 0.72
UPF1-206ENST00000598471 CNTNAP4Q9C0A0 1308 aa19.51■□□□□ 0.71
UPF1-206ENST00000598471 NEXNQ0ZGT2 675 aa19.51■□□□□ 0.71
UPF1-206ENST00000598471 RREB1Q92766 1687 aa19.51■□□□□ 0.71
UPF1-206ENST00000598471 ATP10DQ9P241 1426 aa19.51■□□□□ 0.71
UPF1-206ENST00000598471 RC3H1Q5TC82 1133 aaKnown RBP19.5■□□□□ 0.71
UPF1-206ENST00000598471 LINC00116Q8NCU8 138 aa19.5■□□□□ 0.71
UPF1-206ENST00000598471 PLBD2Q8NHP8 589 aa19.5■□□□□ 0.71
UPF1-206ENST00000598471 SRCIN1Q9C0H9 1055 aa19.5■□□□□ 0.71
UPF1-206ENST00000598471 N4BP2Q86UW6 1770 aaPredicted RBP19.49■□□□□ 0.71
UPF1-206ENST00000598471 INTS5Q6P9B9 1019 aaKnown RBP19.49■□□□□ 0.71
UPF1-206ENST00000598471 TXNRD1Q16881 649 aa19.48■□□□□ 0.71
UPF1-206ENST00000598471 TNS1Q9HBL0 1735 aaKnown RBP19.48■□□□□ 0.71
UPF1-206ENST00000598471 A0A087WZG4 1122 aa19.47■□□□□ 0.71
UPF1-206ENST00000598471 ALDH1L1O75891 902 aa19.47■□□□□ 0.71
UPF1-206ENST00000598471 BEND3Q5T5X7 828 aa19.47■□□□□ 0.71
UPF1-206ENST00000598471 TTLL7Q6ZT98 887 aa19.47■□□□□ 0.71
UPF1-206ENST00000598471 LINS1Q8NG48 757 aa19.47■□□□□ 0.71
UPF1-206ENST00000598471 CCDC136Q96JN2 1154 aa19.47■□□□□ 0.71
UPF1-206ENST00000598471 METTL22Q9BUU2 404 aaPredicted RBP19.47■□□□□ 0.71
UPF1-206ENST00000598471 ZBTB7BO15156 539 aaPredicted RBP19.46■□□□□ 0.71
UPF1-206ENST00000598471 EIF5P55010 431 aaKnown RBP19.46■□□□□ 0.71
UPF1-206ENST00000598471 KCNQ4P56696 695 aa19.46■□□□□ 0.71
UPF1-206ENST00000598471 ARXQ96QS3 562 aa19.46■□□□□ 0.71
UPF1-206ENST00000598471 GNAI3P08754 354 aa19.45■□□□□ 0.7
UPF1-206ENST00000598471 DZIP3Q86Y13 1208 aaKnown RBP19.45■□□□□ 0.7
UPF1-206ENST00000598471 AK7Q96M32 723 aa19.45■□□□□ 0.7
UPF1-206ENST00000598471 MYD88Q99836 296 aa19.45■□□□□ 0.7
UPF1-206ENST00000598471 ZBTB3Q9H5J0 574 aa19.45■□□□□ 0.7
UPF1-206ENST00000598471 LRRC4BQ9NT99 713 aa19.45■□□□□ 0.7
UPF1-206ENST00000598471 ZBTB40Q9NUA8 1239 aa19.45■□□□□ 0.7
UPF1-206ENST00000598471 MAP3K15Q6ZN16 1313 aa19.45■□□□□ 0.7
UPF1-206ENST00000598471 COL15A1P39059 1388 aa19.44■□□□□ 0.7
UPF1-206ENST00000598471 IBTKQ9P2D0 1353 aaPredicted RBP19.44■□□□□ 0.7
UPF1-206ENST00000598471 ARFGEF2Q9Y6D5 1785 aa19.44■□□□□ 0.7
UPF1-206ENST00000598471 HSP90AB3PQ58FF7 597 aa19.44■□□□□ 0.7
UPF1-206ENST00000598471 RGPD3A6NKT7 1758 aaPredicted RBP19.44■□□□□ 0.7
UPF1-206ENST00000598471 RGPD4Q7Z3J3 1758 aa19.44■□□□□ 0.7
UPF1-206ENST00000598471 TAF1LQ8IZX4 1826 aa19.44■□□□□ 0.7
UPF1-206ENST00000598471 C4BP0C0L5 1744 aa19.43■□□□□ 0.7
UPF1-206ENST00000598471 NUP188Q5SRE5 1749 aa19.43■□□□□ 0.7
UPF1-206ENST00000598471 ERVV-1B6SEH8 477 aa19.43■□□□□ 0.7
UPF1-206ENST00000598471 GNPATO15228 680 aa19.43■□□□□ 0.7
UPF1-206ENST00000598471 RPS6KA4O75676 772 aa19.43■□□□□ 0.7
UPF1-206ENST00000598471 HDAC5Q9UQL6 1122 aa19.43■□□□□ 0.7
UPF1-206ENST00000598471 RTCBQ9Y3I0 505 aaKnown RBP19.43■□□□□ 0.7
UPF1-206ENST00000598471 MYH14Q7Z406 1995 aaKnown RBP19.41■□□□□ 0.7
UPF1-206ENST00000598471 B4GALNT3Q6L9W6 998 aa19.41■□□□□ 0.7
UPF1-206ENST00000598471 GIGYF2Q6Y7W6 1299 aaKnown RBP19.41■□□□□ 0.7
UPF1-206ENST00000598471 MEIS3Q99687 375 aa19.41■□□□□ 0.7
UPF1-206ENST00000598471 C9orf78Q9NZ63 289 aaPredicted RBP19.41■□□□□ 0.7
UPF1-206ENST00000598471 NEURL1BA8MQ27 555 aa19.4■□□□□ 0.7
UPF1-206ENST00000598471 UBTFL1P0CB47 393 aaPredicted RBP19.4■□□□□ 0.7
UPF1-206ENST00000598471 CWF19L2Q2TBE0 894 aaKnown RBP19.4■□□□□ 0.7
UPF1-206ENST00000598471 TBC1D2BQ9UPU7 963 aa19.4■□□□□ 0.7
UPF1-206ENST00000598471 ZNF652Q9Y2D9 606 aa19.4■□□□□ 0.7
UPF1-206ENST00000598471 RGL2O15211 777 aa19.39■□□□□ 0.69
UPF1-206ENST00000598471 GNAI2P04899 355 aa19.39■□□□□ 0.69
UPF1-206ENST00000598471 IGKV5-2P06315 115 aa19.39■□□□□ 0.69
UPF1-206ENST00000598471 TCIRG1Q13488 830 aa19.39■□□□□ 0.69
UPF1-206ENST00000598471 PSDA5PKW4 1024 aaPredicted RBP19.38■□□□□ 0.69
UPF1-206ENST00000598471 ADRA2BP18089 450 aa19.38■□□□□ 0.69
UPF1-206ENST00000598471 USP44Q9H0E7 712 aa19.38■□□□□ 0.69
UPF1-206ENST00000598471 CWC25Q9NXE8 425 aaPredicted RBP19.38■□□□□ 0.69
UPF1-206ENST00000598471 ATP5J2-PTCD1G3V325 749 aa19.37■□□□□ 0.69
UPF1-206ENST00000598471 GRM8O00222 908 aa19.37■□□□□ 0.69
UPF1-206ENST00000598471 CAMTA2O94983 1202 aa19.37■□□□□ 0.69
UPF1-206ENST00000598471 GCKRQ14397 625 aa19.37■□□□□ 0.69
UPF1-206ENST00000598471 R3HDM1Q15032 1099 aaKnown RBP19.37■□□□□ 0.69
UPF1-206ENST00000598471 CCDC191Q8NCU4 936 aa19.37■□□□□ 0.69
UPF1-206ENST00000598471 ISCA1Q9BUE6 129 aa19.37■□□□□ 0.69
UPF1-206ENST00000598471 RWDD1Q9H446 243 aaPredicted RBP19.37■□□□□ 0.69
UPF1-206ENST00000598471 ANO8Q9HCE9 1232 aaPredicted RBP19.37■□□□□ 0.69
UPF1-206ENST00000598471 TRIM28Q13263 835 aaKnown RBP19.36■□□□□ 0.69
UPF1-206ENST00000598471 TRAPPC3LQ5T215 181 aa19.36■□□□□ 0.69
UPF1-206ENST00000598471 C1orf115Q9H7X2 142 aa19.36■□□□□ 0.69
UPF1-206ENST00000598471 PCDHB15Q9Y5E8 787 aa19.36■□□□□ 0.69
UPF1-206ENST00000598471 AFDNP55196 1824 aaKnown RBP19.35■□□□□ 0.69
UPF1-206ENST00000598471 UTYO14607 1347 aa19.35■□□□□ 0.69
UPF1-206ENST00000598471 ZPR1O75312 459 aa19.35■□□□□ 0.69
UPF1-206ENST00000598471 SSFA2P28290 1259 aa19.35■□□□□ 0.69
UPF1-206ENST00000598471 HLFQ16534 295 aa19.35■□□□□ 0.69
UPF1-206ENST00000598471 CLEC4GQ6UXB4 293 aa19.35■□□□□ 0.69
UPF1-206ENST00000598471 RPAP2Q8IXW5 612 aaPredicted RBP19.35■□□□□ 0.69
UPF1-206ENST00000598471 NARFQ9UHQ1 456 aa19.35■□□□□ 0.69
UPF1-206ENST00000598471 BCORQ6W2J9 1755 aa19.34■□□□□ 0.69
UPF1-206ENST00000598471 SCN7AQ01118 1682 aa19.34■□□□□ 0.69
UPF1-206ENST00000598471 RFC4P35249 363 aa19.34■□□□□ 0.69
UPF1-206ENST00000598471 CENPQQ7L2Z9 268 aaPredicted RBP19.34■□□□□ 0.69
UPF1-206ENST00000598471 ANKRD36CQ5JPF3 1778 aa19.34■□□□□ 0.69
UPF1-206ENST00000598471 PHF14O94880 888 aa19.33■□□□□ 0.68
UPF1-206ENST00000598471 NBPF7P0C2Y1 421 aaPredicted RBP19.33■□□□□ 0.68
UPF1-206ENST00000598471 HDAC1Q13547 482 aaPredicted RBP19.33■□□□□ 0.68
UPF1-206ENST00000598471 SLC15A2Q16348 729 aa19.33■□□□□ 0.68
UPF1-206ENST00000598471 ZNF827Q17R98 1081 aa19.33■□□□□ 0.68
UPF1-206ENST00000598471 LRRFIP2Q9Y608 721 aaKnown RBP19.33■□□□□ 0.68
UPF1-206ENST00000598471 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.32■□□□□ 0.68
UPF1-206ENST00000598471 HMMRO75330 724 aa19.32■□□□□ 0.68
UPF1-206ENST00000598471 PARP10Q53GL7 1025 aa19.32■□□□□ 0.68
UPF1-206ENST00000598471 ANKRD44Q8N8A2 993 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms