RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 AKAP4Q5JQC9 854 aa12.34□□□□□ -0.43
TRIM28-208ENST00000597172 HABP4Q5JVS0 413 aaKnown RBP12.34□□□□□ -0.43
TRIM28-208ENST00000597172 RC3H1Q5TC82 1133 aaKnown RBP12.34□□□□□ -0.43
TRIM28-208ENST00000597172 IL17REQ8NFR9 667 aa12.34□□□□□ -0.43
TRIM28-208ENST00000597172 CDCA7LQ96GN5 454 aa12.34□□□□□ -0.43
TRIM28-208ENST00000597172 THUMPD2Q9BTF0 503 aaKnown RBP12.34□□□□□ -0.43
TRIM28-208ENST00000597172 SPINK5Q9NQ38 1064 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-208ENST00000597172 GNAT3A8MTJ3 354 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 DLL1O00548 723 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 CA12O43570 354 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 HTATSF1O43719 755 aaKnown RBP12.33□□□□□ -0.44
TRIM28-208ENST00000597172 RPS6KA4O75676 772 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 PHKG2P15735 406 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 FKBP8Q14318 412 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 EAPPQ56P03 285 aaPredicted RBP12.33□□□□□ -0.44
TRIM28-208ENST00000597172 MCM10Q7L590 875 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 WDR63Q8IWG1 891 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 CNTROBQ8N137 903 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 LGR6Q9HBX8 967 aa12.33□□□□□ -0.44
TRIM28-208ENST00000597172 IFNL2Q8IZJ0 200 aa12.32□□□□□ -0.44
TRIM28-208ENST00000597172 TMOD3Q9NYL9 352 aa12.32□□□□□ -0.44
TRIM28-208ENST00000597172 DICER1Q9UPY3 1922 aaKnown RBP12.31□□□□□ -0.44
TRIM28-208ENST00000597172 MAP2K2P36507 400 aa12.31□□□□□ -0.44
TRIM28-208ENST00000597172 GOLGA2Q08379 1002 aa12.31□□□□□ -0.44
TRIM28-208ENST00000597172 SLFN5Q08AF3 891 aa12.31□□□□□ -0.44
TRIM28-208ENST00000597172 LMOD3Q0VAK6 560 aa12.31□□□□□ -0.44
TRIM28-208ENST00000597172 NKX1-1Q15270 411 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-208ENST00000597172 C1orf141Q5JVX7 400 aa12.31□□□□□ -0.44
TRIM28-208ENST00000597172 CYP4F22Q6NT55 531 aa12.31□□□□□ -0.44
TRIM28-208ENST00000597172 TRMT2AQ8IZ69 625 aaKnown RBP12.31□□□□□ -0.44
TRIM28-208ENST00000597172 SRP68Q9UHB9 627 aaKnown RBP12.31□□□□□ -0.44
TRIM28-208ENST00000597172 POLRMTO00411 1230 aaKnown RBP12.3□□□□□ -0.44
TRIM28-208ENST00000597172 RNMTO43148 476 aaKnown RBP12.3□□□□□ -0.44
TRIM28-208ENST00000597172 ZNF853P0CG23 659 aa12.3□□□□□ -0.44
TRIM28-208ENST00000597172 MAP1SQ66K74 1059 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-208ENST00000597172 NBPF15Q8N660 670 aa12.3□□□□□ -0.44
TRIM28-208ENST00000597172 RTF1Q92541 710 aaKnown RBP12.3□□□□□ -0.44
TRIM28-208ENST00000597172 L3MBTL3Q96JM7 780 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-208ENST00000597172 DLG5Q8TDM6 1919 aa12.29□□□□□ -0.44
TRIM28-208ENST00000597172 ATG3Q9NT62 314 aa12.29□□□□□ -0.44
TRIM28-208ENST00000597172 A0A0C4DFX4 3053 aa12.29□□□□□ -0.44
TRIM28-208ENST00000597172 SCN4AP35499 1836 aa12.29□□□□□ -0.44
TRIM28-208ENST00000597172 IL16Q14005 1332 aa12.29□□□□□ -0.44
TRIM28-208ENST00000597172 CEMIPQ8WUJ3 1361 aa12.29□□□□□ -0.44
TRIM28-208ENST00000597172 AOC2O75106 756 aa12.28□□□□□ -0.44
TRIM28-208ENST00000597172 TM4SF1P30408 202 aa12.28□□□□□ -0.44
TRIM28-208ENST00000597172 DUSP27Q5VZP5 1158 aa12.28□□□□□ -0.44
TRIM28-208ENST00000597172 DDX21Q9NR30 783 aaKnown RBP eCLIP12.28□□□□□ -0.44
TRIM28-208ENST00000597172 THSD7BQ9C0I4 1608 aa12.28□□□□□ -0.44
TRIM28-208ENST00000597172 CNTNAP4Q9C0A0 1308 aa12.28□□□□□ -0.44
TRIM28-208ENST00000597172 TRIOBPQ9H2D6 2365 aa12.27□□□□□ -0.44
TRIM28-208ENST00000597172 E9PSI1 815 aa12.27□□□□□ -0.45
TRIM28-208ENST00000597172 HSP90AB1P08238 724 aaKnown RBP12.27□□□□□ -0.45
TRIM28-208ENST00000597172 C2CD5Q86YS7 1000 aa12.27□□□□□ -0.45
TRIM28-208ENST00000597172 SLC4A9Q96Q91 983 aa12.27□□□□□ -0.45
TRIM28-208ENST00000597172 RBM42Q9BTD8 480 aaKnown RBP12.27□□□□□ -0.45
TRIM28-208ENST00000597172 HACL1Q9UJ83 578 aa12.27□□□□□ -0.45
TRIM28-208ENST00000597172 LTBP1Q14766 1721 aa12.27□□□□□ -0.45
TRIM28-208ENST00000597172 CEP290O15078 2479 aa12.27□□□□□ -0.45
TRIM28-208ENST00000597172 H0YIN7 160 aa12.26□□□□□ -0.45
TRIM28-208ENST00000597172 CHL1O00533 1208 aa12.26□□□□□ -0.45
TRIM28-208ENST00000597172 EPHX2P34913 555 aa12.26□□□□□ -0.45
TRIM28-208ENST00000597172 CALD1Q05682 793 aaKnown RBP12.26□□□□□ -0.45
TRIM28-208ENST00000597172 TAF7Q15545 349 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-208ENST00000597172 PNMA8AQ86V59 439 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-208ENST00000597172 IFT57Q9NWB7 429 aa12.26□□□□□ -0.45
TRIM28-208ENST00000597172 MIS18AQ9NYP9 233 aa12.26□□□□□ -0.45
TRIM28-208ENST00000597172 LAS1LQ9Y4W2 734 aaKnown RBP12.26□□□□□ -0.45
TRIM28-208ENST00000597172 USP42Q9H9J4 1324 aaKnown RBP12.26□□□□□ -0.45
TRIM28-208ENST00000597172 MYH14Q7Z406 1995 aaKnown RBP12.25□□□□□ -0.45
TRIM28-208ENST00000597172 C21orf2O43822 256 aa12.25□□□□□ -0.45
TRIM28-208ENST00000597172 GNAI1P63096 354 aa12.25□□□□□ -0.45
TRIM28-208ENST00000597172 TSR2Q969E8 191 aaKnown RBP12.25□□□□□ -0.45
TRIM28-208ENST00000597172 TAOK3Q9H2K8 898 aa12.25□□□□□ -0.45
TRIM28-208ENST00000597172 ADAMTS7Q9UKP4 1686 aa12.25□□□□□ -0.45
TRIM28-208ENST00000597172 ERVV-2B6SEH9 535 aa12.24□□□□□ -0.45
TRIM28-208ENST00000597172 FXR1P51114 621 aaKnown RBP eCLIP12.24□□□□□ -0.459e-8■□□□□ 9
TRIM28-208ENST00000597172 BRPF1P55201 1214 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-208ENST00000597172 NFATC2IPQ8NCF5 419 aa12.24□□□□□ -0.45
TRIM28-208ENST00000597172 SLC52A2Q9HAB3 445 aa12.24□□□□□ -0.45
TRIM28-208ENST00000597172 LTBP3Q9NS15 1303 aa12.24□□□□□ -0.45
TRIM28-208ENST00000597172 MBIPQ9NS73 344 aa12.24□□□□□ -0.45
TRIM28-208ENST00000597172 FANCIQ9NVI1 1328 aa12.23□□□□□ -0.45
TRIM28-208ENST00000597172 TEFQ10587 303 aa12.23□□□□□ -0.45
TRIM28-208ENST00000597172 MYH16Q9H6N6 1097 aa12.23□□□□□ -0.45
TRIM28-208ENST00000597172 BABAM1Q9NWV8 329 aa12.23□□□□□ -0.45
TRIM28-208ENST00000597172 TLL2Q9Y6L7 1015 aa12.23□□□□□ -0.45
TRIM28-208ENST00000597172 KCNQ3O43525 872 aa12.22□□□□□ -0.45
TRIM28-208ENST00000597172 CABP4P57796 275 aa12.22□□□□□ -0.45
TRIM28-208ENST00000597172 FMR1Q06787 632 aaKnown RBP eCLIP12.22□□□□□ -0.452e-10■■■□□ 18
TRIM28-208ENST00000597172 ZNF622Q969S3 477 aaKnown RBP eCLIP12.22□□□□□ -0.45
TRIM28-208ENST00000597172 FER1L6Q2WGJ9 1857 aa12.22□□□□□ -0.45
TRIM28-208ENST00000597172 DLEC1Q9Y238 1755 aa12.21□□□□□ -0.45
TRIM28-208ENST00000597172 BTBD11A6QL63 1104 aa12.21□□□□□ -0.45
TRIM28-208ENST00000597172 ZPR1O75312 459 aa12.21□□□□□ -0.45
TRIM28-208ENST00000597172 CENPBP07199 599 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-208ENST00000597172 EXOSC9Q06265 439 aaKnown RBP12.21□□□□□ -0.45
TRIM28-208ENST00000597172 CST9Q5W186 159 aa12.21□□□□□ -0.45
TRIM28-208ENST00000597172 CIAPIN1Q6FI81 312 aa12.21□□□□□ -0.45
TRIM28-208ENST00000597172 TSPYL4Q9UJ04 414 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms