RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 MSL1Q68DK7 614 aa10.73□□□□□ -0.69
VRK3-211ENST00000596445 CLEC4GQ6UXB4 293 aa10.73□□□□□ -0.69
VRK3-211ENST00000596445 COPS6Q7L5N1 327 aa10.73□□□□□ -0.69
VRK3-211ENST00000596445 XAGE3Q8WTP9 111 aa10.73□□□□□ -0.69
VRK3-211ENST00000596445 BCL2L12Q9HB09 334 aa10.73□□□□□ -0.69
VRK3-211ENST00000596445 SPON1Q9HCB6 807 aa10.73□□□□□ -0.69
VRK3-211ENST00000596445 ATF5Q9Y2D1 282 aaPredicted RBP10.73□□□□□ -0.69
VRK3-211ENST00000596445 TCERG1O14776 1098 aaKnown RBP10.72□□□□□ -0.69
VRK3-211ENST00000596445 AIMP1Q12904 312 aaKnown RBP10.72□□□□□ -0.69
VRK3-211ENST00000596445 FKBP8Q14318 412 aa10.72□□□□□ -0.69
VRK3-211ENST00000596445 PHAXQ9H814 394 aaKnown RBP10.72□□□□□ -0.69
VRK3-211ENST00000596445 ZNF652Q9Y2D9 606 aa10.72□□□□□ -0.69
VRK3-211ENST00000596445 MAP3K15Q6ZN16 1313 aa10.72□□□□□ -0.69
VRK3-211ENST00000596445 ALDH1L2Q3SY69 923 aa10.71□□□□□ -0.69
VRK3-211ENST00000596445 ANKRD13DQ6ZTN6 518 aa10.71□□□□□ -0.69
VRK3-211ENST00000596445 PLBD2Q8NHP8 589 aa10.71□□□□□ -0.69
VRK3-211ENST00000596445 SGIP1Q9BQI5 828 aa10.71□□□□□ -0.69
VRK3-211ENST00000596445 ANKRD36CQ5JPF3 1778 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 ARFGEF2Q9Y6D5 1785 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 LRP5O75197 1615 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 DDX58O95786 925 aaKnown RBP10.7□□□□□ -0.7
VRK3-211ENST00000596445 POLD1P28340 1107 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 TM4SF1P30408 202 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 PTGER2P43116 358 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 HLFQ16534 295 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 GIGYF2Q6Y7W6 1299 aaKnown RBP10.7□□□□□ -0.7
VRK3-211ENST00000596445 SSH1Q8WYL5 1049 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 ZBTB3Q9H5J0 574 aa10.7□□□□□ -0.7
VRK3-211ENST00000596445 MMP10P09238 476 aa10.69□□□□□ -0.7
VRK3-211ENST00000596445 RARSP54136 660 aaKnown RBP10.69□□□□□ -0.7
VRK3-211ENST00000596445 FLIIQ13045 1269 aa10.69□□□□□ -0.7
VRK3-211ENST00000596445 NFIXQ14938 502 aa10.69□□□□□ -0.7
VRK3-211ENST00000596445 TBC1D9BQ66K14 1250 aa10.69□□□□□ -0.7
VRK3-211ENST00000596445 G2E3Q7L622 706 aa10.69□□□□□ -0.7
VRK3-211ENST00000596445 MRPL50Q8N5N7 158 aaKnown RBP10.69□□□□□ -0.7
VRK3-211ENST00000596445 SETDB2Q96T68 719 aa10.69□□□□□ -0.7
VRK3-211ENST00000596445 ATP10DQ9P241 1426 aa10.68□□□□□ -0.7
VRK3-211ENST00000596445 AFDNP55196 1824 aaKnown RBP10.68□□□□□ -0.7
VRK3-211ENST00000596445 BRPF1P55201 1214 aaPredicted RBP10.68□□□□□ -0.7
VRK3-211ENST00000596445 HSP90AB3PQ58FF7 597 aa10.68□□□□□ -0.7
VRK3-211ENST00000596445 BICDL1Q6ZP65 573 aa10.68□□□□□ -0.7
VRK3-211ENST00000596445 RIC3Q7Z5B4 369 aa10.68□□□□□ -0.7
VRK3-211ENST00000596445 SMC4Q9NTJ3 1288 aa10.68□□□□□ -0.7
VRK3-211ENST00000596445 PARP3Q9Y6F1 533 aa10.68□□□□□ -0.7
VRK3-211ENST00000596445 NRXN2Q9P2S2 1712 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 CARMIL3Q8ND23 1372 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 PI4KAP2A4QPH2 592 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 POLRMTO00411 1230 aaKnown RBP10.67□□□□□ -0.7
VRK3-211ENST00000596445 DDR1Q08345 913 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 FKBP5Q13451 457 aaPredicted RBP10.67□□□□□ -0.7
VRK3-211ENST00000596445 TCIRG1Q13488 830 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 KSR2Q6VAB6 950 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 ZNF34Q8IZ26 560 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 PI4KAP1Q8N8J0 262 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 BCL2L13Q9BXK5 485 aa10.67□□□□□ -0.7
VRK3-211ENST00000596445 NIP7Q9Y221 180 aaKnown RBP eCLIP10.67□□□□□ -0.7
VRK3-211ENST00000596445 GOLGB1Q14789 3259 aaKnown RBP10.67□□□□□ -0.7
VRK3-211ENST00000596445 ADCY9O60503 1353 aa10.66□□□□□ -0.7
VRK3-211ENST00000596445 PTPRCP08575 1304 aa10.66□□□□□ -0.7
VRK3-211ENST00000596445 SERPINB2P05120 415 aa10.66□□□□□ -0.7
VRK3-211ENST00000596445 PARP10Q53GL7 1025 aa10.66□□□□□ -0.7
VRK3-211ENST00000596445 METTL22Q9BUU2 404 aaPredicted RBP10.66□□□□□ -0.7
VRK3-211ENST00000596445 MAP3K2Q9Y2U5 619 aa10.66□□□□□ -0.7
VRK3-211ENST00000596445 UBN2Q6ZU65 1347 aa10.65□□□□□ -0.7
VRK3-211ENST00000596445 KIF16BQ96L93 1317 aa10.65□□□□□ -0.7
VRK3-211ENST00000596445 GPTP24298 496 aa10.65□□□□□ -0.7
VRK3-211ENST00000596445 TRIM28Q13263 835 aaKnown RBP10.65□□□□□ -0.7
VRK3-211ENST00000596445 DNAAF4Q8WXU2 420 aa10.65□□□□□ -0.7
VRK3-211ENST00000596445 ISCA1Q9BUE6 129 aa10.65□□□□□ -0.7
VRK3-211ENST00000596445 PPP1R1BQ9UD71 204 aaPredicted RBP10.65□□□□□ -0.7
VRK3-211ENST00000596445 KIF13BQ9NQT8 1826 aa10.65□□□□□ -0.71
VRK3-211ENST00000596445 ATP5J2-PTCD1G3V325 749 aa10.64□□□□□ -0.71
VRK3-211ENST00000596445 BCAR3O75815 825 aa10.64□□□□□ -0.71
VRK3-211ENST00000596445 NEXNQ0ZGT2 675 aa10.64□□□□□ -0.71
VRK3-211ENST00000596445 TPTE2Q6XPS3 522 aa10.64□□□□□ -0.71
VRK3-211ENST00000596445 PPP1R42Q7Z4L9 355 aa10.64□□□□□ -0.71
VRK3-211ENST00000596445 NLRP10Q86W26 655 aa10.64□□□□□ -0.71
VRK3-211ENST00000596445 NBPF5PQ86XG9 351 aaPredicted RBP10.64□□□□□ -0.71
VRK3-211ENST00000596445 MYD88Q99836 296 aa10.64□□□□□ -0.71
VRK3-211ENST00000596445 NYXQ9GZU5 481 aa10.64□□□□□ -0.71
VRK3-211ENST00000596445 IBTKQ9P2D0 1353 aaPredicted RBP10.64□□□□□ -0.71
VRK3-211ENST00000596445 F6X3S4 739 aa10.63□□□□□ -0.71
VRK3-211ENST00000596445 IPO8O15397 1037 aaKnown RBP10.63□□□□□ -0.71
VRK3-211ENST00000596445 SUSD4Q5VX71 490 aa10.63□□□□□ -0.71
VRK3-211ENST00000596445 PRR5LQ6MZQ0 368 aa10.63□□□□□ -0.71
VRK3-211ENST00000596445 CNBD1Q8NA66 436 aa10.63□□□□□ -0.71
VRK3-211ENST00000596445 CCDC191Q8NCU4 936 aa10.63□□□□□ -0.71
VRK3-211ENST00000596445 ARHGAP45Q92619 1136 aa10.63□□□□□ -0.71
VRK3-211ENST00000596445 NOB1Q9ULX3 412 aaKnown RBP10.63□□□□□ -0.71
VRK3-211ENST00000596445 C10orf71Q711Q0 1435 aa10.63□□□□□ -0.71
VRK3-211ENST00000596445 RNF123Q5XPI4 1314 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 ANKRD31Q8N7Z5 1873 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 FAM177BA6PVY3 158 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 NPHP1O15259 732 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 NTSR2O95665 410 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 IGKV5-2P06315 115 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 ST5P78524 1137 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 LINS1Q8NG48 757 aa10.62□□□□□ -0.71
VRK3-211ENST00000596445 UTP14AQ9BVJ6 771 aaKnown RBP10.62□□□□□ -0.71
VRK3-211ENST00000596445 CWC25Q9NXE8 425 aaPredicted RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms