RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 FAM177BA6PVY3 158 aa16.57■□□□□ 0.24
UPF1-203ENST00000594504 HTATSF1O43719 755 aaKnown RBP16.57■□□□□ 0.24
UPF1-203ENST00000594504 ST5P78524 1137 aa16.57■□□□□ 0.24
UPF1-203ENST00000594504 IFFO2Q5TF58 517 aa16.57■□□□□ 0.24
UPF1-203ENST00000594504 DLG5Q8TDM6 1919 aa16.57■□□□□ 0.24
UPF1-203ENST00000594504 TNRC6CQ9HCJ0 1690 aaKnown RBP16.56■□□□□ 0.24
UPF1-203ENST00000594504 POTECB2RU33 542 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 SRGNP10124 158 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 FSTL1Q12841 308 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 RALBP1Q15311 655 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 HLFQ16534 295 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 NGEFQ8N5V2 710 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 PLEKHF1Q96S99 279 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 THUMPD2Q9BTF0 503 aaKnown RBP16.56■□□□□ 0.24
UPF1-203ENST00000594504 PDZRN3Q9UPQ7 1066 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 WDR90Q96KV7 1748 aa16.56■□□□□ 0.24
UPF1-203ENST00000594504 CLEC4GQ6UXB4 293 aa16.55■□□□□ 0.24
UPF1-203ENST00000594504 NBPF5PQ86XG9 351 aaPredicted RBP16.55■□□□□ 0.24
UPF1-203ENST00000594504 MASTLQ96GX5 879 aa16.55■□□□□ 0.24
UPF1-203ENST00000594504 TIAM2Q8IVF5 1701 aa16.55■□□□□ 0.24
UPF1-203ENST00000594504 FER1L6Q2WGJ9 1857 aa16.54■□□□□ 0.24
UPF1-203ENST00000594504 ZC3H4Q9UPT8 1303 aaKnown RBP16.54■□□□□ 0.24
UPF1-203ENST00000594504 VEGFAP15692 232 aaPredicted RBP16.54■□□□□ 0.24
UPF1-203ENST00000594504 ERFEQ4G0M1 354 aa16.54■□□□□ 0.24
UPF1-203ENST00000594504 STYK1Q6J9G0 422 aa16.54■□□□□ 0.24
UPF1-203ENST00000594504 PRPF40BQ6NWY9 871 aaKnown RBP16.54■□□□□ 0.24
UPF1-203ENST00000594504 CNKSR1Q969H4 720 aa16.54■□□□□ 0.24
UPF1-203ENST00000594504 NIP7Q9Y221 180 aaKnown RBP eCLIP16.54■□□□□ 0.24
UPF1-203ENST00000594504 SMC1BQ8NDV3 1235 aa16.53■□□□□ 0.24
UPF1-203ENST00000594504 NEFMP07197 916 aa16.52■□□□□ 0.24
UPF1-203ENST00000594504 DPY19L2Q6NUT2 758 aa16.52■□□□□ 0.24
UPF1-203ENST00000594504 OLFM4Q6UX06 510 aa16.52■□□□□ 0.24
UPF1-203ENST00000594504 ZNF652Q9Y2D9 606 aa16.52■□□□□ 0.24
UPF1-203ENST00000594504 DICER1Q9UPY3 1922 aaKnown RBP16.52■□□□□ 0.23
UPF1-203ENST00000594504 EIF4A1P60842 406 aaKnown RBP16.51■□□□□ 0.23
UPF1-203ENST00000594504 TPTE2Q6XPS3 522 aa16.51■□□□□ 0.23
UPF1-203ENST00000594504 KLRG1Q96E93 195 aa16.51■□□□□ 0.23
UPF1-203ENST00000594504 TAOK3Q9H2K8 898 aa16.51■□□□□ 0.23
UPF1-203ENST00000594504 RRP7AQ9Y3A4 280 aaKnown RBP16.51■□□□□ 0.23
UPF1-203ENST00000594504 DDNO94850 711 aaPredicted RBP16.5■□□□□ 0.23
UPF1-203ENST00000594504 NFE2L2Q16236 605 aa16.5■□□□□ 0.23
UPF1-203ENST00000594504 C7orf43Q8WVR3 580 aa16.5■□□□□ 0.23
UPF1-203ENST00000594504 MYBBP1AQ9BQG0 1328 aaKnown RBP16.49■□□□□ 0.23
UPF1-203ENST00000594504 MYL6BP14649 208 aa16.49■□□□□ 0.23
UPF1-203ENST00000594504 TTLL7Q6ZT98 887 aa16.49■□□□□ 0.23
UPF1-203ENST00000594504 PNISRQ8TF01 805 aaKnown RBP16.49■□□□□ 0.23
UPF1-203ENST00000594504 KDM3BQ7LBC6 1761 aa16.49■□□□□ 0.23
UPF1-203ENST00000594504 LTBP3Q9NS15 1303 aa16.48■□□□□ 0.23
UPF1-203ENST00000594504 KLRG2A4D1S0 409 aaPredicted RBP16.48■□□□□ 0.23
UPF1-203ENST00000594504 NPR1P16066 1061 aa16.48■□□□□ 0.23
UPF1-203ENST00000594504 GTF2E1P29083 439 aaPredicted RBP16.48■□□□□ 0.23
UPF1-203ENST00000594504 NUTM1Q86Y26 1132 aa16.48■□□□□ 0.23
UPF1-203ENST00000594504 PRKRIP1Q9H875 184 aaPredicted RBP16.48■□□□□ 0.23
UPF1-203ENST00000594504 ARFGEF2Q9Y6D5 1785 aa16.48■□□□□ 0.23
UPF1-203ENST00000594504 CEP350Q5VT06 3117 aa16.48■□□□□ 0.23
UPF1-203ENST00000594504 LAMB4A4D0S4 1761 aa16.47■□□□□ 0.23
UPF1-203ENST00000594504 POTEIP0CG38 1075 aa16.47■□□□□ 0.23
UPF1-203ENST00000594504 POTEJP0CG39 1038 aa16.47■□□□□ 0.23
UPF1-203ENST00000594504 NUP98P52948 1817 aa16.47■□□□□ 0.23
UPF1-203ENST00000594504 CCDC93Q567U6 631 aa16.46■□□□□ 0.23
UPF1-203ENST00000594504 SOGA3Q5TF21 947 aa16.46■□□□□ 0.23
UPF1-203ENST00000594504 ZBTB3Q9H5J0 574 aa16.46■□□□□ 0.23
UPF1-203ENST00000594504 ZNF277Q9NRM2 450 aaPredicted RBP16.46■□□□□ 0.23
UPF1-203ENST00000594504 MAP3K15Q6ZN16 1313 aa16.45■□□□□ 0.22
UPF1-203ENST00000594504 MAPK8IP3Q9UPT6 1336 aa16.45■□□□□ 0.22
UPF1-203ENST00000594504 GPTP24298 496 aa16.45■□□□□ 0.22
UPF1-203ENST00000594504 JMYQ8N9B5 988 aa16.45■□□□□ 0.22
UPF1-203ENST00000594504 ERVV-1B6SEH8 477 aa16.44■□□□□ 0.22
UPF1-203ENST00000594504 RGL2O15211 777 aa16.44■□□□□ 0.22
UPF1-203ENST00000594504 RIPK4P57078 832 aa16.44■□□□□ 0.22
UPF1-203ENST00000594504 SUSD4Q5VX71 490 aa16.44■□□□□ 0.22
UPF1-203ENST00000594504 PNNQ9H307 717 aaKnown RBP16.44■□□□□ 0.22
UPF1-203ENST00000594504 ABCC12Q96J65 1359 aa16.43■□□□□ 0.22
UPF1-203ENST00000594504 EIF2S2P20042 333 aaKnown RBP16.43■□□□□ 0.22
UPF1-203ENST00000594504 ALDH1B1P30837 517 aa16.43■□□□□ 0.22
UPF1-203ENST00000594504 FKBP4Q02790 459 aaKnown RBP eCLIP16.43■□□□□ 0.22
UPF1-203ENST00000594504 KIF6Q6ZMV9 814 aa16.43■□□□□ 0.22
UPF1-203ENST00000594504 SLC51AQ86UW1 340 aa16.43■□□□□ 0.22
UPF1-203ENST00000594504 SYNE4Q8N205 404 aa16.43■□□□□ 0.22
UPF1-203ENST00000594504 TSPYL4Q9UJ04 414 aa16.43■□□□□ 0.22
UPF1-203ENST00000594504 UBN2Q6ZU65 1347 aa16.43■□□□□ 0.22
UPF1-203ENST00000594504 ANXA1P04083 346 aa16.42■□□□□ 0.22
UPF1-203ENST00000594504 ZNF541Q9H0D2 1346 aa16.42■□□□□ 0.22
UPF1-203ENST00000594504 TCERG1O14776 1098 aaKnown RBP16.41■□□□□ 0.22
UPF1-203ENST00000594504 PDIA6Q15084 440 aa16.41■□□□□ 0.22
UPF1-203ENST00000594504 CHADLQ6NUI6 762 aa16.41■□□□□ 0.22
UPF1-203ENST00000594504 CCDC146Q8IYE0 955 aa16.41■□□□□ 0.22
UPF1-203ENST00000594504 ZNF34Q8IZ26 560 aa16.41■□□□□ 0.22
UPF1-203ENST00000594504 NECTIN2Q92692 538 aa16.41■□□□□ 0.22
UPF1-203ENST00000594504 NYXQ9GZU5 481 aa16.41■□□□□ 0.22
UPF1-203ENST00000594504 TMPOP42166 694 aaKnown RBP16.4■□□□□ 0.22
UPF1-203ENST00000594504 NEUROD2Q15784 382 aa16.4■□□□□ 0.22
UPF1-203ENST00000594504 PROSER3Q2NL68 480 aa16.4■□□□□ 0.22
UPF1-203ENST00000594504 CRY2Q49AN0 593 aa16.4■□□□□ 0.22
UPF1-203ENST00000594504 COL13A1Q5TAT6 717 aaPredicted RBP16.4■□□□□ 0.22
UPF1-203ENST00000594504 GIGYF2Q6Y7W6 1299 aaKnown RBP16.4■□□□□ 0.22
UPF1-203ENST00000594504 C3orf67Q6ZVT6 689 aa16.4■□□□□ 0.22
UPF1-203ENST00000594504 RTKN2Q8IZC4 609 aa16.4■□□□□ 0.22
UPF1-203ENST00000594504 ANP32CO43423 234 aa16.39■□□□□ 0.21
UPF1-203ENST00000594504 IARSP41252 1262 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms