RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 IL17RAQ96F46 866 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 CARD10Q9BWT7 1032 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 ANO2Q9NQ90 1003 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 STAP2Q9UGK3 403 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 PALD1Q9ULE6 856 aa13.13□□□□□ -0.31
VPS4B-206ENST00000591475 AOX1Q06278 1338 aa13.12□□□□□ -0.31
VPS4B-206ENST00000591475 GNAT3A8MTJ3 354 aa13.12□□□□□ -0.31
VPS4B-206ENST00000591475 TATP17735 454 aaPredicted RBP13.12□□□□□ -0.31
VPS4B-206ENST00000591475 FLIIQ13045 1269 aa13.12□□□□□ -0.31
VPS4B-206ENST00000591475 CCDC30Q5VVM6 783 aa13.12□□□□□ -0.31
VPS4B-206ENST00000591475 LARP1Q6PKG0 1096 aaKnown RBP13.12□□□□□ -0.31
VPS4B-206ENST00000591475 TSPY26PQ9H489 355 aa13.12□□□□□ -0.31
VPS4B-206ENST00000591475 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.12□□□□□ -0.312e-6■■□□□ 12.4
VPS4B-206ENST00000591475 PXDNLA1KZ92 1463 aa13.11□□□□□ -0.31
VPS4B-206ENST00000591475 PNMA6EA0A0J9YXQ4 647 aa13.11□□□□□ -0.31
VPS4B-206ENST00000591475 EPB41L2O43491 1005 aaKnown RBP13.11□□□□□ -0.31
VPS4B-206ENST00000591475 PHF14O94880 888 aa13.11□□□□□ -0.31
VPS4B-206ENST00000591475 FKBP5Q13451 457 aaPredicted RBP13.11□□□□□ -0.31
VPS4B-206ENST00000591475 R3HCC1Q9Y3T6 440 aaKnown RBP13.11□□□□□ -0.31
VPS4B-206ENST00000591475 MAP3K5Q99683 1374 aa13.1□□□□□ -0.31
VPS4B-206ENST00000591475 NOL8Q76FK4 1167 aaKnown RBP13.1□□□□□ -0.31
VPS4B-206ENST00000591475 VSIG10Q8N0Z9 540 aa13.1□□□□□ -0.31
VPS4B-206ENST00000591475 SPG7Q9UQ90 795 aa13.1□□□□□ -0.31
VPS4B-206ENST00000591475 SOS1Q07889 1333 aaPredicted RBP13.09□□□□□ -0.31
VPS4B-206ENST00000591475 WDR33Q9C0J8 1336 aaKnown RBP13.09□□□□□ -0.31
VPS4B-206ENST00000591475 AKAP4Q5JQC9 854 aa13.09□□□□□ -0.31
VPS4B-206ENST00000591475 C1orf141Q5JVX7 400 aa13.09□□□□□ -0.31
VPS4B-206ENST00000591475 TCHHQ07283 1943 aa13.09□□□□□ -0.31
VPS4B-206ENST00000591475 ZNF530Q6P9A1 599 aaPredicted RBP13.08□□□□□ -0.31
VPS4B-206ENST00000591475 RNF214Q8ND24 703 aa13.08□□□□□ -0.31
VPS4B-206ENST00000591475 FBXO41Q8TF61 875 aa13.08□□□□□ -0.31
VPS4B-206ENST00000591475 LRRFIP2Q9Y608 721 aaKnown RBP13.08□□□□□ -0.31
VPS4B-206ENST00000591475 IL2RBP14784 551 aa13.08□□□□□ -0.32
VPS4B-206ENST00000591475 MEGF6O75095 1541 aa13.08□□□□□ -0.32
VPS4B-206ENST00000591475 HSPA4P34932 840 aa13.07□□□□□ -0.32
VPS4B-206ENST00000591475 MAP7D2Q96T17 732 aa13.07□□□□□ -0.32
VPS4B-206ENST00000591475 UPF3BQ9BZI7 483 aaKnown RBP13.07□□□□□ -0.32
VPS4B-206ENST00000591475 SLIT2O94813 1529 aa13.07□□□□□ -0.32
VPS4B-206ENST00000591475 RAB11FIP3O75154 756 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 PTMAP06454 111 aaKnown RBP13.06□□□□□ -0.32
VPS4B-206ENST00000591475 UBTFL1P0CB47 393 aaPredicted RBP13.06□□□□□ -0.32
VPS4B-206ENST00000591475 UNC5CLQ8IV45 518 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 NGLY1Q96IV0 654 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 UQCRHLA0A096LP55 91 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 OVOS2A0A0G2JMS6 1433 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 UQCRHP07919 91 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 USP48Q86UV5 1035 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 FAM184AQ8NB25 1140 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 IL17REQ8NFR9 667 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 C8orf37Q96NL8 207 aa13.06□□□□□ -0.32
VPS4B-206ENST00000591475 GADD45BO75293 160 aaPredicted RBP13.05□□□□□ -0.32
VPS4B-206ENST00000591475 UVSSAQ2YD98 709 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 IFNL2Q8IZJ0 200 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 TMEM87AQ8NBN3 555 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 SSH3Q8TE77 659 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 NECTIN2Q92692 538 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 USP44Q9H0E7 712 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 BABAM1Q9NWV8 329 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 PLCH1Q4KWH8 1693 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 CEMIPQ8WUJ3 1361 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 FNBP4Q8N3X1 1017 aaPredicted RBP13.05□□□□□ -0.32
VPS4B-206ENST00000591475 IL1RAPL2Q9NP60 686 aa13.05□□□□□ -0.32
VPS4B-206ENST00000591475 THRAP3Q9Y2W1 955 aaKnown RBP13.05□□□□□ -0.32
VPS4B-206ENST00000591475 NWD2Q9ULI1 1742 aa13.04□□□□□ -0.32
VPS4B-206ENST00000591475 PHKG2P15735 406 aa13.04□□□□□ -0.32
VPS4B-206ENST00000591475 RBM10P98175 930 aaKnown RBP13.04□□□□□ -0.32
VPS4B-206ENST00000591475 KIAA2012Q0VF49 1180 aa13.04□□□□□ -0.32
VPS4B-206ENST00000591475 FOXD4L6Q3SYB3 417 aaPredicted RBP13.04□□□□□ -0.32
VPS4B-206ENST00000591475 SASS6Q6UVJ0 657 aa13.04□□□□□ -0.32
VPS4B-206ENST00000591475 FOXD4L3Q6VB84 417 aaPredicted RBP13.04□□□□□ -0.32
VPS4B-206ENST00000591475 ZCRB1Q8TBF4 217 aaKnown RBP13.04□□□□□ -0.32
VPS4B-206ENST00000591475 GDPD2Q9HCC8 539 aa13.04□□□□□ -0.32
VPS4B-206ENST00000591475 RAD50Q92878 1312 aa13.04□□□□□ -0.32
VPS4B-206ENST00000591475 RPAP1Q9BWH6 1393 aaPredicted RBP13.04□□□□□ -0.32
VPS4B-206ENST00000591475 DYNC1I1O14576 645 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 LETM1O95202 739 aaPredicted RBP13.03□□□□□ -0.32
VPS4B-206ENST00000591475 CCDC183Q5T5S1 534 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 MPRIPQ6WCQ1 1025 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 NUTM1Q86Y26 1132 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 ZMYND15Q9H091 742 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 PCDH11XQ9BZA7 1347 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 PCDH11YQ9BZA8 1340 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 LRP6O75581 1613 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 TAF7Q15545 349 aaPredicted RBP13.03□□□□□ -0.32
VPS4B-206ENST00000591475 MEX3CQ5U5Q3 659 aaKnown RBP13.03□□□□□ -0.32
VPS4B-206ENST00000591475 CDCA7Q9BWT1 371 aaPredicted RBP13.03□□□□□ -0.32
VPS4B-206ENST00000591475 IL25Q9H293 177 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 SPATA31A1Q5TZJ5 1347 aa13.03□□□□□ -0.32
VPS4B-206ENST00000591475 PARP4Q9UKK3 1724 aaKnown RBP13.03□□□□□ -0.32
VPS4B-206ENST00000591475 CYP27B1O15528 508 aa13.02□□□□□ -0.33
VPS4B-206ENST00000591475 SGSM2O43147 1006 aa13.02□□□□□ -0.33
VPS4B-206ENST00000591475 SURF6O75683 361 aaKnown RBP13.02□□□□□ -0.33
VPS4B-206ENST00000591475 ZSCAN22P10073 491 aaPredicted RBP13.02□□□□□ -0.33
VPS4B-206ENST00000591475 TEFQ10587 303 aa13.02□□□□□ -0.33
VPS4B-206ENST00000591475 PI4K2BQ8TCG2 481 aa13.02□□□□□ -0.33
VPS4B-206ENST00000591475 LGR6Q9HBX8 967 aa13.02□□□□□ -0.33
VPS4B-206ENST00000591475 FAM13BQ9NYF5 915 aa13.02□□□□□ -0.33
VPS4B-206ENST00000591475 SNX14Q9Y5W7 946 aa13.02□□□□□ -0.33
VPS4B-206ENST00000591475 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.02□□□□□ -0.33
VPS4B-206ENST00000591475 NRAPQ86VF7 1730 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms