RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 CHMP3Q9Y3E7 222 aa7.5□□□□□ -1.21
VPS4B-203ENST00000588323 GPC6Q9Y625 555 aaPredicted RBP7.5□□□□□ -1.21
VPS4B-203ENST00000588323 K7ELQ4 463 aaPredicted RBP7.49□□□□□ -1.21
VPS4B-203ENST00000588323 HDGFL1Q5TGJ6 251 aa7.49□□□□□ -1.21
VPS4B-203ENST00000588323 CCDC102BQ68D86 513 aa7.49□□□□□ -1.21
VPS4B-203ENST00000588323 RHPN1Q8TCX5 695 aa7.49□□□□□ -1.21
VPS4B-203ENST00000588323 ADAMTS19Q8TE59 1207 aa7.49□□□□□ -1.21
VPS4B-203ENST00000588323 ELOA3CA0A087WX78 387 aaPredicted RBP7.48□□□□□ -1.21
VPS4B-203ENST00000588323 ELOA3DA6NLF2 546 aaPredicted RBP7.48□□□□□ -1.21
VPS4B-203ENST00000588323 C1QTNF9BB2RNN3 333 aa7.48□□□□□ -1.21
VPS4B-203ENST00000588323 ATP9BO43861 1147 aa7.48□□□□□ -1.21
VPS4B-203ENST00000588323 ALAS2P22557 587 aa7.48□□□□□ -1.21
VPS4B-203ENST00000588323 ELOA3BQ3SY89 546 aa7.48□□□□□ -1.21
VPS4B-203ENST00000588323 SYT9Q86SS6 491 aa7.48□□□□□ -1.21
VPS4B-203ENST00000588323 ELOA3Q8NG57 546 aa7.48□□□□□ -1.21
VPS4B-203ENST00000588323 KIAA1024Q9UPX6 916 aa7.48□□□□□ -1.21
VPS4B-203ENST00000588323 ZBTB7BO15156 539 aaPredicted RBP7.47□□□□□ -1.21
VPS4B-203ENST00000588323 PSMA6P60900 246 aaKnown RBP7.47□□□□□ -1.21
VPS4B-203ENST00000588323 CLDN10P78369 228 aa7.47□□□□□ -1.21
VPS4B-203ENST00000588323 SH3PXD2AQ5TCZ1 1133 aa7.47□□□□□ -1.21
VPS4B-203ENST00000588323 UCN2Q96RP3 112 aa7.47□□□□□ -1.21
VPS4B-203ENST00000588323 RBM19Q9Y4C8 960 aaKnown RBP7.47□□□□□ -1.21
VPS4B-203ENST00000588323 CD163Q86VB7 1156 aa7.46□□□□□ -1.22
VPS4B-203ENST00000588323 LARGE2Q8N3Y3 721 aa7.46□□□□□ -1.22
VPS4B-203ENST00000588323 OGFOD1Q8N543 542 aa7.46□□□□□ -1.22
VPS4B-203ENST00000588323 TSPAN10Q9H1Z9 355 aaPredicted RBP7.46□□□□□ -1.22
VPS4B-203ENST00000588323 MKRN1Q9UHC7 482 aaKnown RBP7.46□□□□□ -1.22
VPS4B-203ENST00000588323 PALM3A6NDB9 673 aaPredicted RBP7.45□□□□□ -1.22
VPS4B-203ENST00000588323 FURINP09958 794 aa7.45□□□□□ -1.22
VPS4B-203ENST00000588323 SFSWAPQ12872 951 aaKnown RBP7.45□□□□□ -1.22
VPS4B-203ENST00000588323 C1orf53Q5VUE5 145 aa7.45□□□□□ -1.22
VPS4B-203ENST00000588323 C7orf43Q8WVR3 580 aa7.45□□□□□ -1.22
VPS4B-203ENST00000588323 TRIM11Q96F44 468 aa7.45□□□□□ -1.22
VPS4B-203ENST00000588323 PLVAPQ9BX97 442 aa7.45□□□□□ -1.22
VPS4B-203ENST00000588323 ANKIB1Q9P2G1 1089 aa7.45□□□□□ -1.22
VPS4B-203ENST00000588323 HCN4Q9Y3Q4 1203 aa7.45□□□□□ -1.22
VPS4B-203ENST00000588323 M0R2N6 131 aa7.44□□□□□ -1.22
VPS4B-203ENST00000588323 SIN3BO75182 1162 aa7.44□□□□□ -1.22
VPS4B-203ENST00000588323 CHRNA4P43681 627 aa7.44□□□□□ -1.22
VPS4B-203ENST00000588323 HIRAP54198 1017 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-203ENST00000588323 NEUROD1Q13562 356 aa7.44□□□□□ -1.22
VPS4B-203ENST00000588323 ZNF594Q96JF6 807 aaPredicted RBP7.44□□□□□ -1.22
VPS4B-203ENST00000588323 PHACTR1Q9C0D0 580 aa7.44□□□□□ -1.22
VPS4B-203ENST00000588323 SPDYE3A6NKU9 549 aa7.43□□□□□ -1.22
VPS4B-203ENST00000588323 PPP1R12BO60237 982 aaPredicted RBP7.43□□□□□ -1.22
VPS4B-203ENST00000588323 SPEM2Q0P670 501 aa7.43□□□□□ -1.22
VPS4B-203ENST00000588323 TSEN2Q8NCE0 465 aaKnown RBP7.43□□□□□ -1.22
VPS4B-203ENST00000588323 HSH2DQ96JZ2 352 aa7.43□□□□□ -1.22
VPS4B-203ENST00000588323 CEP63Q96MT8 703 aa7.43□□□□□ -1.22
VPS4B-203ENST00000588323 SLC30A3Q99726 388 aa7.43□□□□□ -1.22
VPS4B-203ENST00000588323 BRD7Q9NPI1 651 aa7.43□□□□□ -1.22
VPS4B-203ENST00000588323 SFI1A8K8P3 1242 aa7.42□□□□□ -1.22
VPS4B-203ENST00000588323 SPATA31C1P0DKV0 1188 aa7.42□□□□□ -1.22
VPS4B-203ENST00000588323 SIX5Q8N196 739 aa7.42□□□□□ -1.22
VPS4B-203ENST00000588323 MDFIQ99750 246 aa7.42□□□□□ -1.22
VPS4B-203ENST00000588323 ADARB2-AS1A8MUL3 147 aa7.41□□□□□ -1.22
VPS4B-203ENST00000588323 PRRT3Q5FWE3 981 aa7.41□□□□□ -1.22
VPS4B-203ENST00000588323 RAB44Q7Z6P3 723 aaPredicted RBP7.41□□□□□ -1.22
VPS4B-203ENST00000588323 TNFRSF25Q93038 417 aa7.41□□□□□ -1.22
VPS4B-203ENST00000588323 M0R082 166 aa7.4□□□□□ -1.22
VPS4B-203ENST00000588323 RASA1P20936 1047 aa7.4□□□□□ -1.22
VPS4B-203ENST00000588323 POTEAQ6S8J7 498 aa7.4□□□□□ -1.22
VPS4B-203ENST00000588323 ZNF280CQ8ND82 737 aa7.4□□□□□ -1.22
VPS4B-203ENST00000588323 ZNF417Q8TAU3 575 aa7.4□□□□□ -1.22
VPS4B-203ENST00000588323 SUSD3Q96L08 255 aa7.4□□□□□ -1.22
VPS4B-203ENST00000588323 ZNF587Q96SQ5 575 aaPredicted RBP7.4□□□□□ -1.22
VPS4B-203ENST00000588323 KCNH4Q9UQ05 1017 aa7.4□□□□□ -1.22
VPS4B-203ENST00000588323 ATAD2Q6PL18 1390 aa7.39□□□□□ -1.23
VPS4B-203ENST00000588323 ADH7P40394 386 aa7.39□□□□□ -1.23
VPS4B-203ENST00000588323 GATA4P43694 442 aa7.39□□□□□ -1.23
VPS4B-203ENST00000588323 KCNQ4P56696 695 aa7.39□□□□□ -1.23
VPS4B-203ENST00000588323 TYRO3Q06418 890 aa7.39□□□□□ -1.23
VPS4B-203ENST00000588323 ALDH16A1Q8IZ83 802 aa7.39□□□□□ -1.23
VPS4B-203ENST00000588323 GLMNQ92990 594 aa7.39□□□□□ -1.23
VPS4B-203ENST00000588323 CLUAP1Q96AJ1 413 aa7.39□□□□□ -1.23
VPS4B-203ENST00000588323 C21orf2O43822 256 aa7.38□□□□□ -1.23
VPS4B-203ENST00000588323 DKK1O94907 266 aa7.38□□□□□ -1.23
VPS4B-203ENST00000588323 APBA3O96018 575 aa7.38□□□□□ -1.23
VPS4B-203ENST00000588323 SEC13P55735 322 aa7.38□□□□□ -1.23
VPS4B-203ENST00000588323 HIF1AQ16665 826 aa7.38□□□□□ -1.23
VPS4B-203ENST00000588323 PROSER2Q86WR7 435 aaPredicted RBP7.38□□□□□ -1.23
VPS4B-203ENST00000588323 GAS2L2Q8NHY3 880 aa7.38□□□□□ -1.23
VPS4B-203ENST00000588323 CHMP7Q8WUX9 453 aaPredicted RBP7.38□□□□□ -1.23
VPS4B-203ENST00000588323 SCG3Q8WXD2 468 aaKnown RBP7.38□□□□□ -1.23
VPS4B-203ENST00000588323 TFIP11Q9UBB9 837 aaKnown RBP7.38□□□□□ -1.23
VPS4B-203ENST00000588323 ALBP02768 609 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 DOC2BQ14184 412 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 XP32Q5T750 250 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 LARP1Q6PKG0 1096 aaKnown RBP7.37□□□□□ -1.23
VPS4B-203ENST00000588323 MICALL1Q8N3F8 863 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 STAG2Q8N3U4 1231 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 BHMTQ93088 406 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 NGLY1Q96IV0 654 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 PRDM6Q9NQX0 595 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 STARD13Q9Y3M8 1113 aa7.37□□□□□ -1.23
VPS4B-203ENST00000588323 MAFBQ9Y5Q3 323 aaPredicted RBP7.37□□□□□ -1.23
VPS4B-203ENST00000588323 TBC1D8BQ0IIM8 1120 aa7.36□□□□□ -1.23
VPS4B-203ENST00000588323 BTLAQ7Z6A9 289 aa7.36□□□□□ -1.23
VPS4B-203ENST00000588323 HINFPQ9BQA5 517 aa7.36□□□□□ -1.23
VPS4B-203ENST00000588323 C2orf49Q9BVC5 232 aaPredicted RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms