RNA–Protein interactions for RNA: ENST00000584216.5

COPS3-218, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 3

Gene COPS3, Length 876 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-218ENST00000584216 FER1L6Q2WGJ9 1857 aa17.96■□□□□ 0.47
COPS3-218ENST00000584216 COL11A2P13942 1736 aaPredicted RBP17.95■□□□□ 0.46
COPS3-218ENST00000584216 ANKRD31Q8N7Z5 1873 aa17.95■□□□□ 0.46
COPS3-218ENST00000584216 A1BGP04217 495 aa17.95■□□□□ 0.46
COPS3-218ENST00000584216 CC2D1BQ5T0F9 858 aaKnown RBP17.95■□□□□ 0.46
COPS3-218ENST00000584216 NBPF5PQ86XG9 351 aaPredicted RBP17.95■□□□□ 0.46
COPS3-218ENST00000584216 PRDM10Q9NQV6 1147 aa17.95■□□□□ 0.46
COPS3-218ENST00000584216 KIF7Q2M1P5 1343 aa17.95■□□□□ 0.46
COPS3-218ENST00000584216 CCDC88AQ3V6T2 1871 aa17.95■□□□□ 0.46
COPS3-218ENST00000584216 BTBD11A6QL63 1104 aa17.94■□□□□ 0.46
COPS3-218ENST00000584216 POTEIP0CG38 1075 aa17.94■□□□□ 0.46
COPS3-218ENST00000584216 POTEJP0CG39 1038 aa17.94■□□□□ 0.46
COPS3-218ENST00000584216 NPR1P16066 1061 aa17.94■□□□□ 0.46
COPS3-218ENST00000584216 TAF1DQ9H5J8 278 aaPredicted RBP17.94■□□□□ 0.46
COPS3-218ENST00000584216 PASKQ96RG2 1323 aa17.94■□□□□ 0.46
COPS3-218ENST00000584216 DICER1Q9UPY3 1922 aaKnown RBP17.94■□□□□ 0.46
COPS3-218ENST00000584216 VIRMAQ69YN4 1812 aaKnown RBP17.93■□□□□ 0.46
COPS3-218ENST00000584216 CEMIPQ8WUJ3 1361 aa17.93■□□□□ 0.46
COPS3-218ENST00000584216 TMEM88BA6NKF7 163 aa17.93■□□□□ 0.46
COPS3-218ENST00000584216 RGL2O15211 777 aa17.93■□□□□ 0.46
COPS3-218ENST00000584216 CTCFP49711 727 aaPredicted RBP17.93■□□□□ 0.46
COPS3-218ENST00000584216 RTKN2Q8IZC4 609 aa17.93■□□□□ 0.46
COPS3-218ENST00000584216 FOXN1O15353 648 aa17.92■□□□□ 0.46
COPS3-218ENST00000584216 PER1O15534 1290 aaPredicted RBP17.92■□□□□ 0.46
COPS3-218ENST00000584216 FKBP4Q02790 459 aaKnown RBP eCLIP17.92■□□□□ 0.46
COPS3-218ENST00000584216 TPTE2Q6XPS3 522 aa17.92■□□□□ 0.46
COPS3-218ENST00000584216 HACL1Q9UJ83 578 aa17.92■□□□□ 0.46
COPS3-218ENST00000584216 NPC1L1Q9UHC9 1359 aa17.91■□□□□ 0.46
COPS3-218ENST00000584216 EAPPQ56P03 285 aaPredicted RBP17.91■□□□□ 0.46
COPS3-218ENST00000584216 PNMA8AQ86V59 439 aaPredicted RBP17.91■□□□□ 0.46
COPS3-218ENST00000584216 C7orf43Q8WVR3 580 aa17.91■□□□□ 0.46
COPS3-218ENST00000584216 COL3A1P02461 1466 aaPredicted RBP17.9■□□□□ 0.46
COPS3-218ENST00000584216 CLEC11AQ9Y240 323 aa17.9■□□□□ 0.46
COPS3-218ENST00000584216 ARFGEF2Q9Y6D5 1785 aa17.89■□□□□ 0.45
COPS3-218ENST00000584216 KLRG2A4D1S0 409 aaPredicted RBP17.89■□□□□ 0.45
COPS3-218ENST00000584216 SNRPA1P09661 255 aaKnown RBP17.89■□□□□ 0.45
COPS3-218ENST00000584216 ALDH1B1P30837 517 aa17.89■□□□□ 0.45
COPS3-218ENST00000584216 RTF1Q92541 710 aaKnown RBP17.89■□□□□ 0.45
COPS3-218ENST00000584216 CFAP53Q96M91 514 aa17.89■□□□□ 0.45
COPS3-218ENST00000584216 SCN4AP35499 1836 aa17.88■□□□□ 0.45
COPS3-218ENST00000584216 SLX4Q8IY92 1834 aa17.88■□□□□ 0.45
COPS3-218ENST00000584216 ITGBL1O95965 494 aaPredicted RBP17.88■□□□□ 0.45
COPS3-218ENST00000584216 EPHX2P34913 555 aa17.88■□□□□ 0.45
COPS3-218ENST00000584216 VEGFBP49765 207 aa17.88■□□□□ 0.45
COPS3-218ENST00000584216 ZNF277Q9NRM2 450 aaPredicted RBP17.88■□□□□ 0.45
COPS3-218ENST00000584216 USP16Q9Y5T5 823 aa17.88■□□□□ 0.45
COPS3-218ENST00000584216 SIPA1L3O60292 1781 aaPredicted RBP17.88■□□□□ 0.45
COPS3-218ENST00000584216 BCORQ6W2J9 1755 aa17.88■□□□□ 0.45
COPS3-218ENST00000584216 CCER1Q8TC90 406 aaPredicted RBP17.87■□□□□ 0.45
COPS3-218ENST00000584216 NIP7Q9Y221 180 aaKnown RBP eCLIP17.87■□□□□ 0.45
COPS3-218ENST00000584216 NUDCQ9Y266 331 aa17.87■□□□□ 0.45
COPS3-218ENST00000584216 ZNF541Q9H0D2 1346 aa17.87■□□□□ 0.45
COPS3-218ENST00000584216 KCNQ3O43525 872 aa17.86■□□□□ 0.45
COPS3-218ENST00000584216 GTF2E1P29083 439 aaPredicted RBP17.86■□□□□ 0.45
COPS3-218ENST00000584216 PRKAR2BP31323 418 aa17.86■□□□□ 0.45
COPS3-218ENST00000584216 IARSP41252 1262 aaKnown RBP17.86■□□□□ 0.45
COPS3-218ENST00000584216 GPC2Q8N158 579 aa17.86■□□□□ 0.45
COPS3-218ENST00000584216 JDP2Q8WYK2 163 aa17.86■□□□□ 0.45
COPS3-218ENST00000584216 WBP1LQ9NX94 342 aa17.86■□□□□ 0.45
COPS3-218ENST00000584216 RASSF10A6NK89 507 aa17.85■□□□□ 0.45
COPS3-218ENST00000584216 MAP2K1Q02750 393 aaPredicted RBP17.85■□□□□ 0.45
COPS3-218ENST00000584216 DEFB115Q30KQ5 88 aa17.85■□□□□ 0.45
COPS3-218ENST00000584216 FZD9O00144 591 aa17.84■□□□□ 0.45
COPS3-218ENST00000584216 PIP4K2AP48426 406 aaPredicted RBP17.84■□□□□ 0.45
COPS3-218ENST00000584216 CC2D2BQ6DHV5 1058 aa17.84■□□□□ 0.45
COPS3-218ENST00000584216 CNTROBQ8N137 903 aa17.84■□□□□ 0.45
COPS3-218ENST00000584216 PHACTR3Q96KR7 559 aa17.84■□□□□ 0.45
COPS3-218ENST00000584216 PSMD1Q99460 953 aa17.84■□□□□ 0.45
COPS3-218ENST00000584216 RSPH6AQ9H0K4 717 aa17.84■□□□□ 0.45
COPS3-218ENST00000584216 RNF123Q5XPI4 1314 aa17.83■□□□□ 0.44
COPS3-218ENST00000584216 GRIPAP1Q4V328 841 aa17.83■□□□□ 0.44
COPS3-218ENST00000584216 SYNE4Q8N205 404 aa17.83■□□□□ 0.44
COPS3-218ENST00000584216 NYXQ9GZU5 481 aa17.83■□□□□ 0.44
COPS3-218ENST00000584216 LMOD1P29536 600 aaPredicted RBP17.82■□□□□ 0.44
COPS3-218ENST00000584216 LBX1P52954 281 aa17.82■□□□□ 0.44
COPS3-218ENST00000584216 EIF6P56537 245 aaKnown RBP17.82■□□□□ 0.44
COPS3-218ENST00000584216 CNGB1Q14028 1251 aaPredicted RBP17.82■□□□□ 0.44
COPS3-218ENST00000584216 ABT1Q9ULW3 272 aaKnown RBP17.82■□□□□ 0.44
COPS3-218ENST00000584216 CACNA1SQ13698 1873 aa17.82■□□□□ 0.44
COPS3-218ENST00000584216 PRAMEF22A3QJZ6 481 aa17.81■□□□□ 0.44
COPS3-218ENST00000584216 FAM177BA6PVY3 158 aa17.81■□□□□ 0.44
COPS3-218ENST00000584216 HTATSF1O43719 755 aaKnown RBP17.81■□□□□ 0.44
COPS3-218ENST00000584216 MAP1SQ66K74 1059 aaPredicted RBP17.81■□□□□ 0.44
COPS3-218ENST00000584216 WDR33Q9C0J8 1336 aaKnown RBP17.8■□□□□ 0.44
COPS3-218ENST00000584216 OLFM4Q6UX06 510 aa17.8■□□□□ 0.44
COPS3-218ENST00000584216 MCM10Q7L590 875 aa17.8■□□□□ 0.44
COPS3-218ENST00000584216 BEGAINQ9BUH8 593 aa17.8■□□□□ 0.44
COPS3-218ENST00000584216 ADAMTSL1Q8N6G6 1762 aa17.79■□□□□ 0.44
COPS3-218ENST00000584216 NBPF26B4DH59 902 aa17.79■□□□□ 0.44
COPS3-218ENST00000584216 U2AF1L5P0DN76 240 aaPredicted RBP17.79■□□□□ 0.44
COPS3-218ENST00000584216 ECE1P42892 770 aa17.79■□□□□ 0.44
COPS3-218ENST00000584216 U2AF1Q01081 240 aaKnown RBP eCLIP17.79■□□□□ 0.44
COPS3-218ENST00000584216 CRY2Q49AN0 593 aa17.79■□□□□ 0.44
COPS3-218ENST00000584216 NBPF10Q6P3W6 841 aaKnown RBP17.79■□□□□ 0.44
COPS3-218ENST00000584216 NBPF15Q8N660 670 aa17.79■□□□□ 0.44
COPS3-218ENST00000584216 RPGRQ92834 1020 aaKnown RBP17.79■□□□□ 0.44
COPS3-218ENST00000584216 ERVV-1B6SEH8 477 aa17.78■□□□□ 0.44
COPS3-218ENST00000584216 HSPA8P11142 646 aaKnown RBP17.78■□□□□ 0.44
COPS3-218ENST00000584216 DDX21Q9NR30 783 aaKnown RBP eCLIP17.78■□□□□ 0.44
COPS3-218ENST00000584216 GJA3Q9Y6H8 435 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms