RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 CCDC93Q567U6 631 aa13.35□□□□□ -0.27
RFFL-208ENST00000581039 AIDAQ96BJ3 306 aa13.35□□□□□ -0.27
RFFL-208ENST00000581039 L3MBTL3Q96JM7 780 aaPredicted RBP13.35□□□□□ -0.27
RFFL-208ENST00000581039 TAF1DQ9H5J8 278 aaPredicted RBP13.35□□□□□ -0.27
RFFL-208ENST00000581039 KIF7Q2M1P5 1343 aa13.35□□□□□ -0.27
RFFL-208ENST00000581039 CNTNAP1P78357 1384 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 TMEM88BA6NKF7 163 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 FOXN1O15353 648 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 KCNQ3O43525 872 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 NPR1P16066 1061 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 CNGB1Q14028 1251 aaPredicted RBP13.34□□□□□ -0.27
RFFL-208ENST00000581039 EAPPQ56P03 285 aaPredicted RBP13.34□□□□□ -0.27
RFFL-208ENST00000581039 CLEC4GQ6UXB4 293 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 TPTE2Q6XPS3 522 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 C7orf43Q8WVR3 580 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 CLEC11AQ9Y240 323 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 ZNF652Q9Y2D9 606 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 USP16Q9Y5T5 823 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 UBR2Q8IWV8 1755 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 PASKQ96RG2 1323 aa13.34□□□□□ -0.27
RFFL-208ENST00000581039 ANKRD31Q8N7Z5 1873 aa13.33□□□□□ -0.27
RFFL-208ENST00000581039 CTCFP49711 727 aaPredicted RBP13.33□□□□□ -0.28
RFFL-208ENST00000581039 RTKN2Q8IZC4 609 aa13.33□□□□□ -0.28
RFFL-208ENST00000581039 PRDM10Q9NQV6 1147 aa13.33□□□□□ -0.28
RFFL-208ENST00000581039 FER1L6Q2WGJ9 1857 aa13.33□□□□□ -0.28
RFFL-208ENST00000581039 ITGBL1O95965 494 aaPredicted RBP13.32□□□□□ -0.28
RFFL-208ENST00000581039 SNRPA1P09661 255 aaKnown RBP13.32□□□□□ -0.28
RFFL-208ENST00000581039 PIP4K2AP48426 406 aaPredicted RBP13.32□□□□□ -0.28
RFFL-208ENST00000581039 VEGFBP49765 207 aa13.32□□□□□ -0.28
RFFL-208ENST00000581039 FKBP4Q02790 459 aaKnown RBP eCLIP13.32□□□□□ -0.28
RFFL-208ENST00000581039 ZNF277Q9NRM2 450 aaPredicted RBP13.32□□□□□ -0.28
RFFL-208ENST00000581039 HACL1Q9UJ83 578 aa13.32□□□□□ -0.28
RFFL-208ENST00000581039 DICER1Q9UPY3 1922 aaKnown RBP13.32□□□□□ -0.28
RFFL-208ENST00000581039 VIRMAQ69YN4 1812 aaKnown RBP13.32□□□□□ -0.28
RFFL-208ENST00000581039 KLRG2A4D1S0 409 aaPredicted RBP13.31□□□□□ -0.28
RFFL-208ENST00000581039 PNMA8AQ86V59 439 aaPredicted RBP13.31□□□□□ -0.28
RFFL-208ENST00000581039 CCER1Q8TC90 406 aaPredicted RBP13.31□□□□□ -0.28
RFFL-208ENST00000581039 PHACTR3Q96KR7 559 aa13.31□□□□□ -0.28
RFFL-208ENST00000581039 NIP7Q9Y221 180 aaKnown RBP eCLIP13.31□□□□□ -0.28
RFFL-208ENST00000581039 SLX4Q8IY92 1834 aa13.31□□□□□ -0.28
RFFL-208ENST00000581039 CEMIPQ8WUJ3 1361 aa13.31□□□□□ -0.28
RFFL-208ENST00000581039 COL11A2P13942 1736 aaPredicted RBP13.3□□□□□ -0.28
RFFL-208ENST00000581039 FAM177BA6PVY3 158 aa13.3□□□□□ -0.28
RFFL-208ENST00000581039 GTF2E1P29083 439 aaPredicted RBP13.3□□□□□ -0.28
RFFL-208ENST00000581039 ALDH1B1P30837 517 aa13.3□□□□□ -0.28
RFFL-208ENST00000581039 PRKAR2BP31323 418 aa13.3□□□□□ -0.28
RFFL-208ENST00000581039 EPHX2P34913 555 aa13.3□□□□□ -0.28
RFFL-208ENST00000581039 RTF1Q92541 710 aaKnown RBP13.3□□□□□ -0.28
RFFL-208ENST00000581039 ZNF541Q9H0D2 1346 aa13.3□□□□□ -0.28
RFFL-208ENST00000581039 SCN7AQ01118 1682 aa13.3□□□□□ -0.28
RFFL-208ENST00000581039 PRAMEF22A3QJZ6 481 aa13.29□□□□□ -0.28
RFFL-208ENST00000581039 DEFB115Q30KQ5 88 aa13.29□□□□□ -0.28
RFFL-208ENST00000581039 OLFM4Q6UX06 510 aa13.29□□□□□ -0.28
RFFL-208ENST00000581039 CNTROBQ8N137 903 aa13.29□□□□□ -0.28
RFFL-208ENST00000581039 SYNE4Q8N205 404 aa13.29□□□□□ -0.28
RFFL-208ENST00000581039 CFAP53Q96M91 514 aa13.29□□□□□ -0.28
RFFL-208ENST00000581039 WBP1LQ9NX94 342 aa13.29□□□□□ -0.28
RFFL-208ENST00000581039 RGL2O15211 777 aa13.28□□□□□ -0.28
RFFL-208ENST00000581039 IARSP41252 1262 aaKnown RBP13.28□□□□□ -0.28
RFFL-208ENST00000581039 LBX1P52954 281 aa13.28□□□□□ -0.28
RFFL-208ENST00000581039 MAP1SQ66K74 1059 aaPredicted RBP13.28□□□□□ -0.28
RFFL-208ENST00000581039 JDP2Q8WYK2 163 aa13.28□□□□□ -0.28
RFFL-208ENST00000581039 NUDCQ9Y266 331 aa13.28□□□□□ -0.28
RFFL-208ENST00000581039 FZD9O00144 591 aa13.27□□□□□ -0.29
RFFL-208ENST00000581039 MCM10Q7L590 875 aa13.27□□□□□ -0.29
RFFL-208ENST00000581039 GPC2Q8N158 579 aa13.27□□□□□ -0.29
RFFL-208ENST00000581039 RSPH6AQ9H0K4 717 aa13.27□□□□□ -0.29
RFFL-208ENST00000581039 RNF123Q5XPI4 1314 aa13.27□□□□□ -0.29
RFFL-208ENST00000581039 NPC1L1Q9UHC9 1359 aa13.27□□□□□ -0.29
RFFL-208ENST00000581039 COL3A1P02461 1466 aaPredicted RBP13.27□□□□□ -0.29
RFFL-208ENST00000581039 SCN4AP35499 1836 aa13.27□□□□□ -0.29
RFFL-208ENST00000581039 RASSF10A6NK89 507 aa13.26□□□□□ -0.29
RFFL-208ENST00000581039 NBPF26B4DH59 902 aa13.26□□□□□ -0.29
RFFL-208ENST00000581039 MAP2K1Q02750 393 aaPredicted RBP13.26□□□□□ -0.29
RFFL-208ENST00000581039 NBPF10Q6P3W6 841 aaKnown RBP13.26□□□□□ -0.29
RFFL-208ENST00000581039 NBPF15Q8N660 670 aa13.26□□□□□ -0.29
RFFL-208ENST00000581039 ABT1Q9ULW3 272 aaKnown RBP13.26□□□□□ -0.29
RFFL-208ENST00000581039 WDR33Q9C0J8 1336 aaKnown RBP13.25□□□□□ -0.29
RFFL-208ENST00000581039 U2AF1L5P0DN76 240 aaPredicted RBP13.25□□□□□ -0.29
RFFL-208ENST00000581039 EIF6P56537 245 aaKnown RBP13.25□□□□□ -0.29
RFFL-208ENST00000581039 U2AF1Q01081 240 aaKnown RBP eCLIP13.25□□□□□ -0.29
RFFL-208ENST00000581039 HLFQ16534 295 aa13.25□□□□□ -0.29
RFFL-208ENST00000581039 CC2D2BQ6DHV5 1058 aa13.25□□□□□ -0.29
RFFL-208ENST00000581039 PSMD1Q99460 953 aa13.25□□□□□ -0.29
RFFL-208ENST00000581039 GJA3Q9Y6H8 435 aa13.25□□□□□ -0.29
RFFL-208ENST00000581039 SIPA1L3O60292 1781 aaPredicted RBP13.25□□□□□ -0.29
RFFL-208ENST00000581039 HTATSF1O43719 755 aaKnown RBP13.24□□□□□ -0.29
RFFL-208ENST00000581039 LMOD1P29536 600 aaPredicted RBP13.24□□□□□ -0.29
RFFL-208ENST00000581039 NYXQ9GZU5 481 aa13.24□□□□□ -0.29
RFFL-208ENST00000581039 CACNA1SQ13698 1873 aa13.23□□□□□ -0.29
RFFL-208ENST00000581039 ARFGEF2Q9Y6D5 1785 aa13.23□□□□□ -0.29
RFFL-208ENST00000581039 HSPA8P11142 646 aaKnown RBP13.23□□□□□ -0.29
RFFL-208ENST00000581039 DCTN1Q14203 1278 aa13.23□□□□□ -0.29
RFFL-208ENST00000581039 TAF7Q15545 349 aaPredicted RBP13.23□□□□□ -0.29
RFFL-208ENST00000581039 GRIPAP1Q4V328 841 aa13.23□□□□□ -0.29
RFFL-208ENST00000581039 NGEFQ8N5V2 710 aa13.23□□□□□ -0.29
RFFL-208ENST00000581039 RPGRQ92834 1020 aaKnown RBP13.23□□□□□ -0.29
RFFL-208ENST00000581039 DDX21Q9NR30 783 aaKnown RBP eCLIP13.23□□□□□ -0.29
RFFL-208ENST00000581039 CRY2Q49AN0 593 aa13.22□□□□□ -0.29
RFFL-208ENST00000581039 PAXIP1Q6ZW49 1069 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 290.4 ms