RNA–Protein interactions for RNA: ENST00000576940.1

NPLOC4-220, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5

Gene NPLOC4, Length 216 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-220ENST00000576940 C7orf43Q8WVR3 580 aa13.69□□□□□ -0.22
NPLOC4-220ENST00000576940 PRDM10Q9NQV6 1147 aa13.69□□□□□ -0.22
NPLOC4-220ENST00000576940 USP16Q9Y5T5 823 aa13.69□□□□□ -0.22
NPLOC4-220ENST00000576940 COL11A2P13942 1736 aaPredicted RBP13.69□□□□□ -0.22
NPLOC4-220ENST00000576940 IQCA1LA6NCM1 817 aa13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 TMEM88BA6NKF7 163 aa13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 GNAT3A8MTJ3 354 aa13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 EAPPQ56P03 285 aaPredicted RBP13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 CC2D1BQ5T0F9 858 aaKnown RBP13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 OLFM4Q6UX06 510 aa13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 NPM2Q86SE8 214 aaKnown RBP13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 DZIP3Q86Y13 1208 aaKnown RBP13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 CLEC11AQ9Y240 323 aa13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 UBR2Q8IWV8 1755 aa13.68□□□□□ -0.22
NPLOC4-220ENST00000576940 U2SURPO15042 1029 aaKnown RBP13.67□□□□□ -0.22
NPLOC4-220ENST00000576940 CTCFP49711 727 aaPredicted RBP13.67□□□□□ -0.22
NPLOC4-220ENST00000576940 LBX1P52954 281 aa13.67□□□□□ -0.22
NPLOC4-220ENST00000576940 CNGB1Q14028 1251 aaPredicted RBP13.67□□□□□ -0.22
NPLOC4-220ENST00000576940 FMNL2Q96PY5 1086 aa13.67□□□□□ -0.22
NPLOC4-220ENST00000576940 ZNF277Q9NRM2 450 aaPredicted RBP13.67□□□□□ -0.22
NPLOC4-220ENST00000576940 PRAMEF22A3QJZ6 481 aa13.66□□□□□ -0.22
NPLOC4-220ENST00000576940 SOGA3Q5TF21 947 aa13.66□□□□□ -0.22
NPLOC4-220ENST00000576940 AIDAQ96BJ3 306 aa13.66□□□□□ -0.22
NPLOC4-220ENST00000576940 L3MBTL3Q96JM7 780 aaPredicted RBP13.66□□□□□ -0.22
NPLOC4-220ENST00000576940 WBP1LQ9NX94 342 aa13.66□□□□□ -0.22
NPLOC4-220ENST00000576940 ZNF541Q9H0D2 1346 aa13.65□□□□□ -0.22
NPLOC4-220ENST00000576940 CACNA1SQ13698 1873 aa13.65□□□□□ -0.22
NPLOC4-220ENST00000576940 BTBD11A6QL63 1104 aa13.65□□□□□ -0.22
NPLOC4-220ENST00000576940 PER1O15534 1290 aaPredicted RBP13.65□□□□□ -0.22
NPLOC4-220ENST00000576940 CCDC93Q567U6 631 aa13.65□□□□□ -0.22
NPLOC4-220ENST00000576940 NBPF5PQ86XG9 351 aaPredicted RBP13.65□□□□□ -0.22
NPLOC4-220ENST00000576940 GAS2L2Q8NHY3 880 aa13.65□□□□□ -0.22
NPLOC4-220ENST00000576940 HACL1Q9UJ83 578 aa13.65□□□□□ -0.22
NPLOC4-220ENST00000576940 FAM177BA6PVY3 158 aa13.64□□□□□ -0.23
NPLOC4-220ENST00000576940 NPR1P16066 1061 aa13.64□□□□□ -0.23
NPLOC4-220ENST00000576940 EPHX2P34913 555 aa13.64□□□□□ -0.23
NPLOC4-220ENST00000576940 FKBP4Q02790 459 aaKnown RBP eCLIP13.64□□□□□ -0.23
NPLOC4-220ENST00000576940 DEFB115Q30KQ5 88 aa13.64□□□□□ -0.23
NPLOC4-220ENST00000576940 MAP1SQ66K74 1059 aaPredicted RBP13.64□□□□□ -0.23
NPLOC4-220ENST00000576940 CNTROBQ8N137 903 aa13.64□□□□□ -0.23
NPLOC4-220ENST00000576940 PHACTR3Q96KR7 559 aa13.64□□□□□ -0.23
NPLOC4-220ENST00000576940 SCN7AQ01118 1682 aa13.63□□□□□ -0.23
NPLOC4-220ENST00000576940 SYNE4Q8N205 404 aa13.63□□□□□ -0.23
NPLOC4-220ENST00000576940 RNF123Q5XPI4 1314 aa13.63□□□□□ -0.23
NPLOC4-220ENST00000576940 SCN4AP35499 1836 aa13.62□□□□□ -0.23
NPLOC4-220ENST00000576940 KLRG2A4D1S0 409 aaPredicted RBP13.62□□□□□ -0.23
NPLOC4-220ENST00000576940 CLEC4GQ6UXB4 293 aa13.62□□□□□ -0.23
NPLOC4-220ENST00000576940 TPTE2Q6XPS3 522 aa13.62□□□□□ -0.23
NPLOC4-220ENST00000576940 KIF7Q2M1P5 1343 aa13.62□□□□□ -0.23
NPLOC4-220ENST00000576940 CLSPNQ9HAW4 1339 aa13.62□□□□□ -0.23
NPLOC4-220ENST00000576940 RASSF10A6NK89 507 aa13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 FZD9O00144 591 aa13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 HSPA8P11142 646 aaKnown RBP13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 FMR1Q06787 632 aaKnown RBP eCLIP13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 PNMA8AQ86V59 439 aaPredicted RBP13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 RTKN2Q8IZC4 609 aa13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 ABHD8Q96I13 439 aa13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 NIP7Q9Y221 180 aaKnown RBP eCLIP13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 WDR33Q9C0J8 1336 aaKnown RBP13.61□□□□□ -0.23
NPLOC4-220ENST00000576940 NBPF26B4DH59 902 aa13.6□□□□□ -0.23
NPLOC4-220ENST00000576940 IARSP41252 1262 aaKnown RBP13.6□□□□□ -0.23
NPLOC4-220ENST00000576940 HLFQ16534 295 aa13.6□□□□□ -0.23
NPLOC4-220ENST00000576940 NBPF10Q6P3W6 841 aaKnown RBP13.6□□□□□ -0.23
NPLOC4-220ENST00000576940 NBPF15Q8N660 670 aa13.6□□□□□ -0.23
NPLOC4-220ENST00000576940 ABT1Q9ULW3 272 aaKnown RBP13.6□□□□□ -0.23
NPLOC4-220ENST00000576940 CEMIPQ8WUJ3 1361 aa13.59□□□□□ -0.23
NPLOC4-220ENST00000576940 SIPA1L3O60292 1781 aaPredicted RBP13.59□□□□□ -0.23
NPLOC4-220ENST00000576940 SNRPA1P09661 255 aaKnown RBP13.59□□□□□ -0.23
NPLOC4-220ENST00000576940 ALDH1B1P30837 517 aa13.59□□□□□ -0.23
NPLOC4-220ENST00000576940 PRKAR2BP31323 418 aa13.59□□□□□ -0.23
NPLOC4-220ENST00000576940 ZNF652Q9Y2D9 606 aa13.59□□□□□ -0.23
NPLOC4-220ENST00000576940 GJA3Q9Y6H8 435 aa13.59□□□□□ -0.23
NPLOC4-220ENST00000576940 ARFGEF2Q9Y6D5 1785 aa13.58□□□□□ -0.23
NPLOC4-220ENST00000576940 GTF2E1P29083 439 aaPredicted RBP13.58□□□□□ -0.24
NPLOC4-220ENST00000576940 MAP2K1Q02750 393 aaPredicted RBP13.58□□□□□ -0.24
NPLOC4-220ENST00000576940 FAM161AQ3B820 660 aa13.58□□□□□ -0.24
NPLOC4-220ENST00000576940 MCM10Q7L590 875 aa13.58□□□□□ -0.24
NPLOC4-220ENST00000576940 GPC2Q8N158 579 aa13.58□□□□□ -0.24
NPLOC4-220ENST00000576940 DDX21Q9NR30 783 aaKnown RBP eCLIP13.58□□□□□ -0.24
NPLOC4-220ENST00000576940 COL3A1P02461 1466 aaPredicted RBP13.57□□□□□ -0.24
NPLOC4-220ENST00000576940 GRM1Q13255 1194 aa13.57□□□□□ -0.24
NPLOC4-220ENST00000576940 DCTN1Q14203 1278 aa13.57□□□□□ -0.24
NPLOC4-220ENST00000576940 NGEFQ8N5V2 710 aa13.57□□□□□ -0.24
NPLOC4-220ENST00000576940 JDP2Q8WYK2 163 aa13.57□□□□□ -0.24
NPLOC4-220ENST00000576940 BCORQ6W2J9 1755 aa13.57□□□□□ -0.24
NPLOC4-220ENST00000576940 ADAMTSL1Q8N6G6 1762 aa13.56□□□□□ -0.24
NPLOC4-220ENST00000576940 EPS15P42566 896 aa13.56□□□□□ -0.24
NPLOC4-220ENST00000576940 PAXIP1Q6ZW49 1069 aaPredicted RBP13.56□□□□□ -0.24
NPLOC4-220ENST00000576940 SLC51AQ86UW1 340 aa13.56□□□□□ -0.24
NPLOC4-220ENST00000576940 NUTM1Q86Y26 1132 aa13.56□□□□□ -0.24
NPLOC4-220ENST00000576940 RSPH6AQ9H0K4 717 aa13.56□□□□□ -0.24
NPLOC4-220ENST00000576940 MIS18AQ9NYP9 233 aa13.56□□□□□ -0.24
NPLOC4-220ENST00000576940 CCDC85CA6NKD9 419 aa13.55□□□□□ -0.24
NPLOC4-220ENST00000576940 TCERG1O14776 1098 aaKnown RBP13.55□□□□□ -0.24
NPLOC4-220ENST00000576940 EIF6P56537 245 aaKnown RBP13.55□□□□□ -0.24
NPLOC4-220ENST00000576940 CYP4F22Q6NT55 531 aa13.55□□□□□ -0.24
NPLOC4-220ENST00000576940 RTF1Q92541 710 aaKnown RBP13.55□□□□□ -0.24
NPLOC4-220ENST00000576940 PSMD1Q99460 953 aa13.55□□□□□ -0.24
NPLOC4-220ENST00000576940 TRAF5O00463 557 aa13.54□□□□□ -0.24
NPLOC4-220ENST00000576940 SLC34A2O95436 690 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms