RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 CHMP4BQ9H444 224 aaKnown RBP14.7□□□□□ -0.06
CIITA-209ENST00000573309 NSFL1CQ9UNZ2 370 aaKnown RBP14.7□□□□□ -0.06
CIITA-209ENST00000573309 PTPRCP08575 1304 aa14.7□□□□□ -0.06
CIITA-209ENST00000573309 SOS2Q07890 1332 aaPredicted RBP14.7□□□□□ -0.06
CIITA-209ENST00000573309 RGPD5Q99666 1765 aa14.7□□□□□ -0.06
CIITA-209ENST00000573309 IL2RBP14784 551 aa14.7□□□□□ -0.06
CIITA-209ENST00000573309 RGS12O14924 1447 aa14.69□□□□□ -0.06
CIITA-209ENST00000573309 PPP1R42Q7Z4L9 355 aa14.69□□□□□ -0.06
CIITA-209ENST00000573309 ASAP1Q9ULH1 1129 aa14.69□□□□□ -0.06
CIITA-209ENST00000573309 DYNC1I1O14576 645 aa14.69□□□□□ -0.06
CIITA-209ENST00000573309 CCT4P50991 539 aaKnown RBP14.69□□□□□ -0.06
CIITA-209ENST00000573309 SMIM5Q71RC9 77 aa14.69□□□□□ -0.06
CIITA-209ENST00000573309 SMAP1Q8IYB5 467 aaPredicted RBP14.69□□□□□ -0.06
CIITA-209ENST00000573309 ANKRD44Q8N8A2 993 aa14.69□□□□□ -0.06
CIITA-209ENST00000573309 RILPL2Q969X0 211 aa14.69□□□□□ -0.06
CIITA-209ENST00000573309 ZHX1Q9UKY1 873 aaPredicted RBP14.69□□□□□ -0.06
CIITA-209ENST00000573309 MARF1Q9Y4F3 1742 aaKnown RBP14.69□□□□□ -0.06
CIITA-209ENST00000573309 C8orf37Q96NL8 207 aa14.68□□□□□ -0.06
CIITA-209ENST00000573309 DBF4Q9UBU7 674 aaPredicted RBP14.68□□□□□ -0.06
CIITA-209ENST00000573309 ZGPATQ8N5A5 531 aaKnown RBP14.68□□□□□ -0.06
CIITA-209ENST00000573309 TMEM63CQ9P1W3 806 aa14.68□□□□□ -0.06
CIITA-209ENST00000573309 TRIM6-TRIM34B2RNG4 842 aa14.68□□□□□ -0.06
CIITA-209ENST00000573309 GSPT1P15170 499 aaKnown RBP14.68□□□□□ -0.06
CIITA-209ENST00000573309 WDR17Q8IZU2 1322 aa14.68□□□□□ -0.06
CIITA-209ENST00000573309 KIF24Q5T7B8 1368 aa14.67□□□□□ -0.06
CIITA-209ENST00000573309 CEMIPQ8WUJ3 1361 aa14.67□□□□□ -0.06
CIITA-209ENST00000573309 BRPF1P55201 1214 aaPredicted RBP14.67□□□□□ -0.06
CIITA-209ENST00000573309 ZDHHC9Q9Y397 364 aa14.67□□□□□ -0.06
CIITA-209ENST00000573309 SYCE3A1L190 88 aa14.67□□□□□ -0.06
CIITA-209ENST00000573309 NUCB2P80303 420 aa14.67□□□□□ -0.06
CIITA-209ENST00000573309 A0A0U1RQG5 324 aaPredicted RBP14.66□□□□□ -0.06
CIITA-209ENST00000573309 SASS6Q6UVJ0 657 aa14.66□□□□□ -0.06
CIITA-209ENST00000573309 RGPD1P0DJD0 1748 aa14.66□□□□□ -0.06
CIITA-209ENST00000573309 STRCQ7RTU9 1775 aa14.66□□□□□ -0.06
CIITA-209ENST00000573309 CDC45O75419 566 aa14.66□□□□□ -0.06
CIITA-209ENST00000573309 TTLL7Q6ZT98 887 aa14.66□□□□□ -0.06
CIITA-209ENST00000573309 RNF214Q8ND24 703 aa14.66□□□□□ -0.06
CIITA-209ENST00000573309 TSC1Q92574 1164 aa14.66□□□□□ -0.06
CIITA-209ENST00000573309 DCAF5Q96JK2 942 aa14.66□□□□□ -0.06
CIITA-209ENST00000573309 DCTPP1Q9H773 170 aa14.65□□□□□ -0.06
CIITA-209ENST00000573309 KDM6AO15550 1401 aaPredicted RBP14.65□□□□□ -0.06
CIITA-209ENST00000573309 CSPP1Q1MSJ5 1256 aa14.65□□□□□ -0.06
CIITA-209ENST00000573309 CAMTA1Q9Y6Y1 1673 aa14.65□□□□□ -0.06
CIITA-209ENST00000573309 RABEP1Q15276 862 aa14.65□□□□□ -0.06
CIITA-209ENST00000573309 LRSAM1Q6UWE0 723 aa14.65□□□□□ -0.06
CIITA-209ENST00000573309 PLEKHM2Q8IWE5 1019 aa14.65□□□□□ -0.06
CIITA-209ENST00000573309 FOXD4L5Q5VV16 416 aaPredicted RBP14.64□□□□□ -0.07
CIITA-209ENST00000573309 FOXD4L4Q8WXT5 416 aaPredicted RBP14.64□□□□□ -0.07
CIITA-209ENST00000573309 EP400Q96L91 3159 aa14.64□□□□□ -0.07
CIITA-209ENST00000573309 DTNBO60941 627 aa14.64□□□□□ -0.07
CIITA-209ENST00000573309 BEND3Q5T5X7 828 aa14.64□□□□□ -0.07
CIITA-209ENST00000573309 NOL8Q76FK4 1167 aaKnown RBP14.64□□□□□ -0.07
CIITA-209ENST00000573309 UBE3BQ7Z3V4 1068 aa14.64□□□□□ -0.07
CIITA-209ENST00000573309 HMMRO75330 724 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 GNAI3P08754 354 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 GPTP24298 496 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 RPAP2Q8IXW5 612 aaPredicted RBP14.63□□□□□ -0.07
CIITA-209ENST00000573309 MPNDQ8N594 471 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 FMNL2Q96PY5 1086 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 TMOD3Q9NYL9 352 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 CCDC39Q9UFE4 941 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 MCM5P33992 734 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 USP26Q9BXU7 913 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 NDUFB9Q9Y6M9 179 aa14.63□□□□□ -0.07
CIITA-209ENST00000573309 PDIA6Q15084 440 aa14.62□□□□□ -0.07
CIITA-209ENST00000573309 MTERF4Q7Z6M4 381 aaKnown RBP14.62□□□□□ -0.07
CIITA-209ENST00000573309 DNAJC10Q8IXB1 793 aa14.62□□□□□ -0.07
CIITA-209ENST00000573309 NGLY1Q96IV0 654 aa14.62□□□□□ -0.07
CIITA-209ENST00000573309 SOS1Q07889 1333 aaPredicted RBP14.62□□□□□ -0.07
CIITA-209ENST00000573309 SNRPA1P09661 255 aaKnown RBP14.62□□□□□ -0.07
CIITA-209ENST00000573309 ADCY9O60503 1353 aa14.62□□□□□ -0.07
CIITA-209ENST00000573309 FAM98CQ17RN3 349 aaKnown RBP14.62□□□□□ -0.07
CIITA-209ENST00000573309 CCDC94Q9BW85 323 aaPredicted RBP14.62□□□□□ -0.07
CIITA-209ENST00000573309 SRCAPQ6ZRS2 3230 aa14.62□□□□□ -0.07
CIITA-209ENST00000573309 KSR2Q6VAB6 950 aa14.61□□□□□ -0.07
CIITA-209ENST00000573309 SUCLG2Q96I99 432 aa14.61□□□□□ -0.07
CIITA-209ENST00000573309 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.61□□□□□ -0.07
CIITA-209ENST00000573309 ZSCAN20P17040 1043 aaPredicted RBP14.61□□□□□ -0.07
CIITA-209ENST00000573309 ANKRD13DQ6ZTN6 518 aa14.61□□□□□ -0.07
CIITA-209ENST00000573309 PIGBQ92521 554 aa14.61□□□□□ -0.07
CIITA-209ENST00000573309 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.61□□□□□ -0.07
CIITA-209ENST00000573309 NBPF26B4DH59 902 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 EPHA10Q5JZY3 1008 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 NBPF14Q5TI25 921 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 NBPF10Q6P3W6 841 aaKnown RBP14.6□□□□□ -0.07
CIITA-209ENST00000573309 AEBP2Q6ZN18 517 aaPredicted RBP14.6□□□□□ -0.07
CIITA-209ENST00000573309 SYNE4Q8N205 404 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 NBPF15Q8N660 670 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 CCDC8Q9H0W5 538 aaPredicted RBP14.6□□□□□ -0.07
CIITA-209ENST00000573309 BICC1Q9H694 974 aaKnown RBP14.6□□□□□ -0.07
CIITA-209ENST00000573309 DDX21Q9NR30 783 aaKnown RBP eCLIP14.6□□□□□ -0.07
CIITA-209ENST00000573309 EXOC5O00471 708 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 UNC5CLQ8IV45 518 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 ZNF710Q8N1W2 664 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 SLIT3O75094 1523 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 IGKV5-2P06315 115 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 SDSP20132 328 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 DMTNQ08495 405 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 CARD10Q9BWT7 1032 aa14.6□□□□□ -0.07
CIITA-209ENST00000573309 LRRCC1Q9C099 1032 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms