RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 SNRPA1P09661 255 aaKnown RBP12.11□□□□□ -0.47
VPS53-206ENST00000570359 EPHA10Q5JZY3 1008 aa12.11□□□□□ -0.47
VPS53-206ENST00000570359 CLASRPQ8N2M8 674 aaKnown RBP12.11□□□□□ -0.47
VPS53-206ENST00000570359 LINS1Q8NG48 757 aa12.11□□□□□ -0.47
VPS53-206ENST00000570359 SYTL4Q96C24 671 aaPredicted RBP12.11□□□□□ -0.47
VPS53-206ENST00000570359 TLR7Q9NYK1 1049 aaKnown RBP12.11□□□□□ -0.47
VPS53-206ENST00000570359 NDUFB9Q9Y6M9 179 aa12.11□□□□□ -0.47
VPS53-206ENST00000570359 PXDNLA1KZ92 1463 aa12.11□□□□□ -0.47
VPS53-206ENST00000570359 CCDC85AQ96PX6 553 aaPredicted RBP12.11□□□□□ -0.47
VPS53-206ENST00000570359 OSBPL3Q9H4L5 887 aa12.11□□□□□ -0.47
VPS53-206ENST00000570359 ANKRD13DQ6ZTN6 518 aa12.1□□□□□ -0.47
VPS53-206ENST00000570359 KAZALD1Q96I82 304 aa12.1□□□□□ -0.47
VPS53-206ENST00000570359 ST18O60284 1047 aa12.1□□□□□ -0.47
VPS53-206ENST00000570359 G3BP1Q13283 466 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS53-206ENST00000570359 CHMP4AQ9BY43 222 aa12.1□□□□□ -0.47
VPS53-206ENST00000570359 C5P01031 1676 aa12.09□□□□□ -0.47
VPS53-206ENST00000570359 NEURL1BA8MQ27 555 aa12.09□□□□□ -0.47
VPS53-206ENST00000570359 RAB11FIP3O75154 756 aa12.09□□□□□ -0.47
VPS53-206ENST00000570359 PI4K2BQ8TCG2 481 aa12.09□□□□□ -0.47
VPS53-206ENST00000570359 CPA1P15085 419 aa12.09□□□□□ -0.47
VPS53-206ENST00000570359 TTLL7Q6ZT98 887 aa12.09□□□□□ -0.47
VPS53-206ENST00000570359 BOLA2Q9H3K6 86 aa12.09□□□□□ -0.47
VPS53-206ENST00000570359 A0A087WZG4 1122 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 TRAK2O60296 914 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 ALDH1L1O75891 902 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 EDC3Q96F86 508 aaKnown RBP12.08□□□□□ -0.48
VPS53-206ENST00000570359 BTG4Q9NY30 223 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 WDR17Q8IZU2 1322 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 CAMTA1Q9Y6Y1 1673 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 GCKRQ14397 625 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 CNTROBQ8N137 903 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 DIAPH3Q9NSV4 1193 aa12.08□□□□□ -0.48
VPS53-206ENST00000570359 IL2RBP14784 551 aa12.07□□□□□ -0.48
VPS53-206ENST00000570359 NCLP19338 710 aaKnown RBP12.07□□□□□ -0.48
VPS53-206ENST00000570359 MCCP23508 829 aa12.07□□□□□ -0.48
VPS53-206ENST00000570359 DCCP43146 1447 aa12.07□□□□□ -0.48
VPS53-206ENST00000570359 HEG1Q9ULI3 1381 aa12.07□□□□□ -0.48
VPS53-206ENST00000570359 XIRP1Q702N8 1843 aaKnown RBP12.07□□□□□ -0.48
VPS53-206ENST00000570359 LMTK3Q96Q04 1460 aa12.07□□□□□ -0.48
VPS53-206ENST00000570359 SASH1O94885 1247 aa12.07□□□□□ -0.48
VPS53-206ENST00000570359 HSP90AB4PQ58FF6 505 aa12.07□□□□□ -0.48
VPS53-206ENST00000570359 EAF2Q96CJ1 260 aaPredicted RBP12.07□□□□□ -0.48
VPS53-206ENST00000570359 METTL22Q9BUU2 404 aaPredicted RBP12.07□□□□□ -0.48
VPS53-206ENST00000570359 STAP2Q9UGK3 403 aa12.07□□□□□ -0.48
VPS53-206ENST00000570359 PCDH11XQ9BZA7 1347 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 PCDH11YQ9BZA8 1340 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 NBPF26B4DH59 902 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 ADAMTS2O95450 1211 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 NBPF14Q5TI25 921 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 NBPF10Q6P3W6 841 aaKnown RBP12.06□□□□□ -0.48
VPS53-206ENST00000570359 NBPF15Q8N660 670 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 COL18A1P39060 1754 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 MCTP1Q6DN14 999 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 KIAA1211Q6ZU35 1233 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 SCN11AQ9UI33 1791 aa12.06□□□□□ -0.48
VPS53-206ENST00000570359 KCNJ4P48050 445 aa12.05□□□□□ -0.48
VPS53-206ENST00000570359 ECHDC1Q9NTX5 307 aa12.05□□□□□ -0.48
VPS53-206ENST00000570359 CHGBP05060 677 aa12.05□□□□□ -0.48
VPS53-206ENST00000570359 RAB3GAP1Q15042 981 aa12.05□□□□□ -0.48
VPS53-206ENST00000570359 GPATCH3Q96I76 525 aa12.05□□□□□ -0.48
VPS53-206ENST00000570359 GBP4Q96PP9 640 aa12.05□□□□□ -0.48
VPS53-206ENST00000570359 DNAJC2Q99543 621 aaKnown RBP12.05□□□□□ -0.48
VPS53-206ENST00000570359 SIPA1L3O60292 1781 aaPredicted RBP12.04□□□□□ -0.48
VPS53-206ENST00000570359 DDIT3P35638 169 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 LMBR1LQ6UX01 489 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 FAM227BQ96M60 508 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS53-206ENST00000570359 ASAP1Q9ULH1 1129 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 NCOA3Q9Y6Q9 1424 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 NUTM2BA6NNL0 878 aaPredicted RBP12.04□□□□□ -0.48
VPS53-206ENST00000570359 NUTM2EB1AL46 878 aaPredicted RBP12.04□□□□□ -0.48
VPS53-206ENST00000570359 GLRX3O76003 335 aaKnown RBP12.04□□□□□ -0.48
VPS53-206ENST00000570359 TFCP2Q12800 502 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 NUTM2AQ8IVF1 878 aaPredicted RBP12.04□□□□□ -0.48
VPS53-206ENST00000570359 ZNF594Q96JF6 807 aaPredicted RBP12.04□□□□□ -0.48
VPS53-206ENST00000570359 TMX3Q96JJ7 454 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 FSD1Q9BTV5 496 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 TMOD3Q9NYL9 352 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 OVOS2A0A0G2JMS6 1433 aa12.04□□□□□ -0.48
VPS53-206ENST00000570359 SOS2Q07890 1332 aaPredicted RBP12.03□□□□□ -0.48
VPS53-206ENST00000570359 COL5A2P05997 1499 aaPredicted RBP12.03□□□□□ -0.48
VPS53-206ENST00000570359 NEUROD6Q96NK8 337 aa12.03□□□□□ -0.48
VPS53-206ENST00000570359 STRCQ7RTU9 1775 aa12.03□□□□□ -0.48
VPS53-206ENST00000570359 PTH1RQ03431 593 aa12.03□□□□□ -0.48
VPS53-206ENST00000570359 PRPF40BQ6NWY9 871 aaKnown RBP12.03□□□□□ -0.48
VPS53-206ENST00000570359 DDX11L8A8MPP1 907 aa12.02□□□□□ -0.48
VPS53-206ENST00000570359 GPTP24298 496 aa12.02□□□□□ -0.48
VPS53-206ENST00000570359 RASEFQ8IZ41 740 aa12.02□□□□□ -0.48
VPS53-206ENST00000570359 TCEANC2Q96MN5 208 aa12.02□□□□□ -0.48
VPS53-206ENST00000570359 CPDO75976 1380 aa12.02□□□□□ -0.48
VPS53-206ENST00000570359 SGSM2O43147 1006 aa12.02□□□□□ -0.49
VPS53-206ENST00000570359 ERC1Q8IUD2 1116 aa12.02□□□□□ -0.49
VPS53-206ENST00000570359 N4BP2Q86UW6 1770 aaPredicted RBP12.02□□□□□ -0.49
VPS53-206ENST00000570359 FAM177BA6PVY3 158 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 EIF5BO60841 1220 aaKnown RBP12.01□□□□□ -0.49
VPS53-206ENST00000570359 PIP4K2BP78356 416 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 MTX1Q13505 466 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 SLFNL1Q499Z3 407 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 LRP10Q7Z4F1 713 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 DNAJC10Q8IXB1 793 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms