RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PPP1R37O75864 691 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 ZNF790Q6PG37 636 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 LARP1Q6PKG0 1096 aaKnown RBP10.04□□□□□ -0.8
VPS39-213ENST00000570062 TMEM57Q8N5G2 664 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 FMNL2Q96PY5 1086 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 ZBTB40Q9NUA8 1239 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 HYPKQ9NX55 129 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 MIS18AQ9NYP9 233 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 LHX6Q9UPM6 363 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 LRRC37A3O60309 1634 aa10.04□□□□□ -0.8
VPS39-213ENST00000570062 ZBTB7BO15156 539 aaPredicted RBP10.03□□□□□ -0.8
VPS39-213ENST00000570062 DDX58O95786 925 aaKnown RBP10.03□□□□□ -0.8
VPS39-213ENST00000570062 SNRPA1P09661 255 aaKnown RBP10.03□□□□□ -0.8
VPS39-213ENST00000570062 RLBP1P12271 317 aa10.03□□□□□ -0.8
VPS39-213ENST00000570062 TEX13AQ9BXU3 409 aaPredicted RBP10.03□□□□□ -0.8
VPS39-213ENST00000570062 ERBB4Q15303 1308 aa10.03□□□□□ -0.8
VPS39-213ENST00000570062 KDM2BQ8NHM5 1336 aa10.03□□□□□ -0.8
VPS39-213ENST00000570062 HEG1Q9ULI3 1381 aa10.02□□□□□ -0.8
VPS39-213ENST00000570062 COL14A1Q05707 1796 aaKnown RBP10.02□□□□□ -0.81
VPS39-213ENST00000570062 CYP27B1O15528 508 aa10.02□□□□□ -0.81
VPS39-213ENST00000570062 GIGYF1O75420 1035 aaPredicted RBP10.02□□□□□ -0.81
VPS39-213ENST00000570062 FLIIQ13045 1269 aa10.02□□□□□ -0.81
VPS39-213ENST00000570062 RPAP2Q8IXW5 612 aaPredicted RBP10.02□□□□□ -0.81
VPS39-213ENST00000570062 GCC1Q96CN9 775 aa10.02□□□□□ -0.81
VPS39-213ENST00000570062 MEGF6O75095 1541 aa10.02□□□□□ -0.81
VPS39-213ENST00000570062 DLG5Q8TDM6 1919 aa10.01□□□□□ -0.81
VPS39-213ENST00000570062 GNAI3P08754 354 aa10.01□□□□□ -0.81
VPS39-213ENST00000570062 PBX2P40425 430 aa10.01□□□□□ -0.81
VPS39-213ENST00000570062 FKBP5Q13451 457 aaPredicted RBP10.01□□□□□ -0.81
VPS39-213ENST00000570062 BARGINQ6ZT62 677 aa10.01□□□□□ -0.81
VPS39-213ENST00000570062 NFATC2IPQ8NCF5 419 aa10.01□□□□□ -0.81
VPS39-213ENST00000570062 DDX21Q9NR30 783 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS39-213ENST00000570062 IBTKQ9P2D0 1353 aaPredicted RBP10.01□□□□□ -0.81
VPS39-213ENST00000570062 EIF5BO60841 1220 aaKnown RBP10□□□□□ -0.81
VPS39-213ENST00000570062 HMMRO75330 724 aa10□□□□□ -0.81
VPS39-213ENST00000570062 VSIG10Q8N0Z9 540 aa10□□□□□ -0.81
VPS39-213ENST00000570062 MRC1P22897 1456 aa9.99□□□□□ -0.81
VPS39-213ENST00000570062 ADAMTS2O95450 1211 aa9.99□□□□□ -0.81
VPS39-213ENST00000570062 HMGB2P26583 209 aaKnown RBP9.99□□□□□ -0.81
VPS39-213ENST00000570062 KRT24Q2M2I5 525 aa9.99□□□□□ -0.81
VPS39-213ENST00000570062 UNC5CLQ8IV45 518 aa9.99□□□□□ -0.81
VPS39-213ENST00000570062 DDX54Q8TDD1 881 aaKnown RBP9.99□□□□□ -0.81
VPS39-213ENST00000570062 TMOD3Q9NYL9 352 aa9.99□□□□□ -0.81
VPS39-213ENST00000570062 SPATA31A1Q5TZJ5 1347 aa9.99□□□□□ -0.81
VPS39-213ENST00000570062 ADAMTS7Q9UKP4 1686 aa9.99□□□□□ -0.81
VPS39-213ENST00000570062 PXDNLA1KZ92 1463 aa9.98□□□□□ -0.81
VPS39-213ENST00000570062 COL16A1Q07092 1604 aaPredicted RBP9.98□□□□□ -0.81
VPS39-213ENST00000570062 EIF2S2P20042 333 aaKnown RBP9.98□□□□□ -0.81
VPS39-213ENST00000570062 IFFO2Q5TF58 517 aa9.98□□□□□ -0.81
VPS39-213ENST00000570062 POTEEQ6S8J3 1075 aa9.98□□□□□ -0.81
VPS39-213ENST00000570062 FNBP4Q8N3X1 1017 aaPredicted RBP9.98□□□□□ -0.81
VPS39-213ENST00000570062 PCDHB15Q9Y5E8 787 aa9.98□□□□□ -0.81
VPS39-213ENST00000570062 PHLPP1O60346 1717 aa9.98□□□□□ -0.81
VPS39-213ENST00000570062 PARP4Q9UKK3 1724 aaKnown RBP9.98□□□□□ -0.81
VPS39-213ENST00000570062 KDM6AO15550 1401 aaPredicted RBP9.98□□□□□ -0.81
VPS39-213ENST00000570062 ALDH1L1O75891 902 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 GNAI2P04899 355 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 VPS72Q15906 364 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 DDB1Q16531 1140 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 KSR2Q6VAB6 950 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 NGLY1Q96IV0 654 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 SRCIN1Q9C0H9 1055 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 SPATA31A5Q5VU36 1347 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 SPATA31A7Q8IWB4 1347 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 DISP2A7MBM2 1401 aa9.97□□□□□ -0.81
VPS39-213ENST00000570062 PKD1L3Q7Z443 1732 aa9.96□□□□□ -0.81
VPS39-213ENST00000570062 ABCA3Q99758 1704 aa9.96□□□□□ -0.81
VPS39-213ENST00000570062 NUTM2BA6NNL0 878 aaPredicted RBP9.96□□□□□ -0.82
VPS39-213ENST00000570062 NUTM2EB1AL46 878 aaPredicted RBP9.96□□□□□ -0.82
VPS39-213ENST00000570062 NEXNQ0ZGT2 675 aa9.96□□□□□ -0.82
VPS39-213ENST00000570062 SLC4A10Q6U841 1118 aa9.96□□□□□ -0.82
VPS39-213ENST00000570062 NUTM2AQ8IVF1 878 aaPredicted RBP9.96□□□□□ -0.82
VPS39-213ENST00000570062 SMC5Q8IY18 1101 aa9.96□□□□□ -0.82
VPS39-213ENST00000570062 DNAAF4Q8WXU2 420 aa9.96□□□□□ -0.82
VPS39-213ENST00000570062 USP35Q9P2H5 1018 aa9.96□□□□□ -0.82
VPS39-213ENST00000570062 SLIT2O94813 1529 aa9.96□□□□□ -0.82
VPS39-213ENST00000570062 STARD3NLO95772 234 aa9.95□□□□□ -0.82
VPS39-213ENST00000570062 IGHDP01880 384 aa9.95□□□□□ -0.82
VPS39-213ENST00000570062 ANKRD44Q8N8A2 993 aa9.95□□□□□ -0.82
VPS39-213ENST00000570062 ZNF496Q96IT1 587 aaPredicted RBP9.95□□□□□ -0.82
VPS39-213ENST00000570062 CHPF2Q9P2E5 772 aa9.95□□□□□ -0.82
VPS39-213ENST00000570062 TNNQ9UQP3 1299 aa9.95□□□□□ -0.82
VPS39-213ENST00000570062 CCDC9Q9Y3X0 531 aaKnown RBP9.95□□□□□ -0.82
VPS39-213ENST00000570062 ATP10DQ9P241 1426 aa9.95□□□□□ -0.82
VPS39-213ENST00000570062 PSDA5PKW4 1024 aaPredicted RBP9.94□□□□□ -0.82
VPS39-213ENST00000570062 KCNQ3O43525 872 aa9.94□□□□□ -0.82
VPS39-213ENST00000570062 G2E3Q7L622 706 aa9.94□□□□□ -0.82
VPS39-213ENST00000570062 LINS1Q8NG48 757 aa9.94□□□□□ -0.82
VPS39-213ENST00000570062 RGPD5Q99666 1765 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 RGS12O14924 1447 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 TNS2Q63HR2 1409 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 PI4KAP2A4QPH2 592 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 UBTFL1P0CB47 393 aaPredicted RBP9.93□□□□□ -0.82
VPS39-213ENST00000570062 FOXK1P85037 733 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 SLC39A6Q13433 755 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 HSP90AB4PQ58FF6 505 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 MEX3CQ5U5Q3 659 aaKnown RBP9.93□□□□□ -0.82
VPS39-213ENST00000570062 RIC3Q7Z5B4 369 aa9.93□□□□□ -0.82
VPS39-213ENST00000570062 NPM2Q86SE8 214 aaKnown RBP9.93□□□□□ -0.82
VPS39-213ENST00000570062 HS6ST3Q8IZP7 471 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms