RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 PNISRQ8TF01 805 aaKnown RBP22.36■■□□□ 1.17
CLN3-231ENST00000568422 PNNQ9H307 717 aaKnown RBP22.36■■□□□ 1.17
CLN3-231ENST00000568422 NFKBIEO00221 500 aa22.35■■□□□ 1.17
CLN3-231ENST00000568422 STYK1Q6J9G0 422 aa22.35■■□□□ 1.17
CLN3-231ENST00000568422 CNKSR1Q969H4 720 aa22.35■■□□□ 1.17
CLN3-231ENST00000568422 CACNA1SQ13698 1873 aa22.34■■□□□ 1.17
CLN3-231ENST00000568422 WDR90Q96KV7 1748 aa22.34■■□□□ 1.17
CLN3-231ENST00000568422 PRELPP51888 382 aa22.34■■□□□ 1.17
CLN3-231ENST00000568422 KDM3BQ7LBC6 1761 aa22.34■■□□□ 1.17
CLN3-231ENST00000568422 C21orf2O43822 256 aa22.33■■□□□ 1.17
CLN3-231ENST00000568422 SRGNP10124 158 aa22.33■■□□□ 1.17
CLN3-231ENST00000568422 PIP4K2AP48426 406 aaPredicted RBP22.33■■□□□ 1.17
CLN3-231ENST00000568422 SOGA3Q5TF21 947 aa22.33■■□□□ 1.17
CLN3-231ENST00000568422 NBPF5PQ86XG9 351 aaPredicted RBP22.33■■□□□ 1.17
CLN3-231ENST00000568422 CCDC24Q8N4L8 307 aa22.33■■□□□ 1.17
CLN3-231ENST00000568422 MASTLQ96GX5 879 aa22.33■■□□□ 1.17
CLN3-231ENST00000568422 SLX4Q8IY92 1834 aa22.32■■□□□ 1.16
CLN3-231ENST00000568422 NBPF26B4DH59 902 aa22.32■■□□□ 1.16
CLN3-231ENST00000568422 VEGFAP15692 232 aaPredicted RBP22.32■■□□□ 1.16
CLN3-231ENST00000568422 NBPF10Q6P3W6 841 aaKnown RBP22.32■■□□□ 1.16
CLN3-231ENST00000568422 NBPF15Q8N660 670 aa22.32■■□□□ 1.16
CLN3-231ENST00000568422 PLEKHF1Q96S99 279 aa22.32■■□□□ 1.16
CLN3-231ENST00000568422 LTBP3Q9NS15 1303 aa22.31■■□□□ 1.16
CLN3-231ENST00000568422 TPTE2Q6XPS3 522 aa22.31■■□□□ 1.16
CLN3-231ENST00000568422 DNAJC5GQ8N7S2 189 aa22.31■■□□□ 1.16
CLN3-231ENST00000568422 SMC1BQ8NDV3 1235 aa22.31■■□□□ 1.16
CLN3-231ENST00000568422 DPY19L2Q6NUT2 758 aa22.3■■□□□ 1.16
CLN3-231ENST00000568422 NFE2L2Q16236 605 aa22.29■■□□□ 1.16
CLN3-231ENST00000568422 PRPF40BQ6NWY9 871 aaKnown RBP22.29■■□□□ 1.16
CLN3-231ENST00000568422 MIS18AQ9NYP9 233 aa22.29■■□□□ 1.16
CLN3-231ENST00000568422 MAPK8IP3Q9UPT6 1336 aa22.29■■□□□ 1.16
CLN3-231ENST00000568422 ERFEQ4G0M1 354 aa22.28■■□□□ 1.16
CLN3-231ENST00000568422 TAOK3Q9H2K8 898 aa22.28■■□□□ 1.16
CLN3-231ENST00000568422 ZNF219Q9P2Y4 722 aaPredicted RBP22.28■■□□□ 1.16
CLN3-231ENST00000568422 NIP7Q9Y221 180 aaKnown RBP eCLIP22.28■■□□□ 1.16
CLN3-231ENST00000568422 KLRG2A4D1S0 409 aaPredicted RBP22.27■■□□□ 1.16
CLN3-231ENST00000568422 NUP98P52948 1817 aa22.27■■□□□ 1.15
CLN3-231ENST00000568422 NPR1P16066 1061 aa22.26■■□□□ 1.15
CLN3-231ENST00000568422 IFFO2Q5TF58 517 aa22.26■■□□□ 1.15
CLN3-231ENST00000568422 ERVV-1B6SEH8 477 aa22.25■■□□□ 1.15
CLN3-231ENST00000568422 EIF4A1P60842 406 aaKnown RBP22.25■■□□□ 1.15
CLN3-231ENST00000568422 RALBP1Q15311 655 aa22.24■■□□□ 1.15
CLN3-231ENST00000568422 C7orf43Q8WVR3 580 aa22.23■■□□□ 1.15
CLN3-231ENST00000568422 NYXQ9GZU5 481 aa22.23■■□□□ 1.15
CLN3-231ENST00000568422 GTF2E1P29083 439 aaPredicted RBP22.22■■□□□ 1.15
CLN3-231ENST00000568422 HLFQ16534 295 aa22.22■■□□□ 1.15
CLN3-231ENST00000568422 CCDC93Q567U6 631 aa22.22■■□□□ 1.15
CLN3-231ENST00000568422 ALDH1B1P30837 517 aa22.21■■□□□ 1.15
CLN3-231ENST00000568422 KIF6Q6ZMV9 814 aa22.21■■□□□ 1.15
CLN3-231ENST00000568422 KLRG1Q96E93 195 aa22.21■■□□□ 1.15
CLN3-231ENST00000568422 MAP3K15Q6ZN16 1313 aa22.21■■□□□ 1.15
CLN3-231ENST00000568422 POTECB2RU33 542 aa22.2■■□□□ 1.14
CLN3-231ENST00000568422 THUMPD2Q9BTF0 503 aaKnown RBP22.2■■□□□ 1.14
CLN3-231ENST00000568422 RRP7AQ9Y3A4 280 aaKnown RBP22.2■■□□□ 1.14
CLN3-231ENST00000568422 ERBB4Q15303 1308 aa22.2■■□□□ 1.14
CLN3-231ENST00000568422 FAM177BA6PVY3 158 aa22.19■■□□□ 1.14
CLN3-231ENST00000568422 RTKN2Q8IZC4 609 aa22.19■■□□□ 1.14
CLN3-231ENST00000568422 NGEFQ8N5V2 710 aa22.19■■□□□ 1.14
CLN3-231ENST00000568422 BABAM1Q9NWV8 329 aa22.19■■□□□ 1.14
CLN3-231ENST00000568422 JMYQ8N9B5 988 aa22.18■■□□□ 1.14
CLN3-231ENST00000568422 IBTKQ9P2D0 1353 aaPredicted RBP22.17■■□□□ 1.14
CLN3-231ENST00000568422 HTRA3P83110 453 aa22.17■■□□□ 1.14
CLN3-231ENST00000568422 FKBP4Q02790 459 aaKnown RBP eCLIP22.17■■□□□ 1.14
CLN3-231ENST00000568422 LMOD3Q0VAK6 560 aa22.17■■□□□ 1.14
CLN3-231ENST00000568422 SCN4AP35499 1836 aa22.17■■□□□ 1.14
CLN3-231ENST00000568422 MYL6BP14649 208 aa22.16■■□□□ 1.14
CLN3-231ENST00000568422 RIPK4P57078 832 aa22.16■■□□□ 1.14
CLN3-231ENST00000568422 CRY2Q49AN0 593 aa22.16■■□□□ 1.14
CLN3-231ENST00000568422 TSPYL4Q9UJ04 414 aa22.16■■□□□ 1.14
CLN3-231ENST00000568422 RIC1Q4ADV7 1423 aa22.15■■□□□ 1.14
CLN3-231ENST00000568422 TTLL7Q6ZT98 887 aa22.15■■□□□ 1.14
CLN3-231ENST00000568422 IQCA1LA6NCM1 817 aa22.14■■□□□ 1.13
CLN3-231ENST00000568422 DDNO94850 711 aaPredicted RBP22.14■■□□□ 1.13
CLN3-231ENST00000568422 CC2D2BQ6DHV5 1058 aa22.13■■□□□ 1.13
CLN3-231ENST00000568422 GIGYF2Q6Y7W6 1299 aaKnown RBP22.13■■□□□ 1.13
CLN3-231ENST00000568422 L3MBTL3Q96JM7 780 aaPredicted RBP22.13■■□□□ 1.13
CLN3-231ENST00000568422 ZBTB3Q9H5J0 574 aa22.13■■□□□ 1.13
CLN3-231ENST00000568422 MYBBP1AQ9BQG0 1328 aaKnown RBP22.12■■□□□ 1.13
CLN3-231ENST00000568422 TMPOP42166 694 aaKnown RBP22.12■■□□□ 1.13
CLN3-231ENST00000568422 GRIPAP1Q4V328 841 aa22.12■■□□□ 1.13
CLN3-231ENST00000568422 NUTM1Q86Y26 1132 aa22.12■■□□□ 1.13
CLN3-231ENST00000568422 ZNF34Q8IZ26 560 aa22.12■■□□□ 1.13
CLN3-231ENST00000568422 ABCC12Q96J65 1359 aa22.12■■□□□ 1.13
CLN3-231ENST00000568422 HOXA10P31260 410 aaPredicted RBP22.11■■□□□ 1.13
CLN3-231ENST00000568422 PARP10Q53GL7 1025 aa22.11■■□□□ 1.13
CLN3-231ENST00000568422 CHADLQ6NUI6 762 aa22.11■■□□□ 1.13
CLN3-231ENST00000568422 PPP1R42Q7Z4L9 355 aa22.11■■□□□ 1.13
CLN3-231ENST00000568422 RPGRQ92834 1020 aaKnown RBP22.11■■□□□ 1.13
CLN3-231ENST00000568422 ZNF277Q9NRM2 450 aaPredicted RBP22.11■■□□□ 1.13
CLN3-231ENST00000568422 UBN2Q6ZU65 1347 aa22.1■■□□□ 1.13
CLN3-231ENST00000568422 GPTP24298 496 aa22.1■■□□□ 1.13
CLN3-231ENST00000568422 SUSD4Q5VX71 490 aa22.1■■□□□ 1.13
CLN3-231ENST00000568422 PSMD1Q99460 953 aa22.1■■□□□ 1.13
CLN3-231ENST00000568422 PCNTO95613 3336 aa22.09■■□□□ 1.13
CLN3-231ENST00000568422 DDX10Q13206 875 aaKnown RBP22.09■■□□□ 1.13
CLN3-231ENST00000568422 OLFM4Q6UX06 510 aa22.09■■□□□ 1.13
CLN3-231ENST00000568422 SYNE4Q8N205 404 aa22.09■■□□□ 1.13
CLN3-231ENST00000568422 NTSR2O95665 410 aa22.08■■□□□ 1.13
CLN3-231ENST00000568422 EIF2S2P20042 333 aaKnown RBP22.08■■□□□ 1.13
CLN3-231ENST00000568422 IARSP41252 1262 aaKnown RBP22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms