RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 XAGE3Q8WTP9 111 aa25.26■■□□□ 1.63
CLN3-225ENST00000566824 AFDNP55196 1824 aaKnown RBP25.26■■□□□ 1.63
CLN3-225ENST00000566824 TBC1D9BQ66K14 1250 aa25.25■■□□□ 1.63
CLN3-225ENST00000566824 NPM2Q86SE8 214 aaKnown RBP25.25■■□□□ 1.63
CLN3-225ENST00000566824 PPP1R1BQ9UD71 204 aaPredicted RBP25.25■■□□□ 1.63
CLN3-225ENST00000566824 AIMP1Q12904 312 aaKnown RBP25.24■■□□□ 1.63
CLN3-225ENST00000566824 BICDL1Q6ZP65 573 aa25.24■■□□□ 1.63
CLN3-225ENST00000566824 COPS6Q7L5N1 327 aa25.24■■□□□ 1.63
CLN3-225ENST00000566824 ZBTB3Q9H5J0 574 aa25.24■■□□□ 1.63
CLN3-225ENST00000566824 DBF4Q9UBU7 674 aaPredicted RBP25.24■■□□□ 1.63
CLN3-225ENST00000566824 PHAXQ9H814 394 aaKnown RBP25.23■■□□□ 1.63
CLN3-225ENST00000566824 MAP3K15Q6ZN16 1313 aa25.22■■□□□ 1.63
CLN3-225ENST00000566824 POLRMTO00411 1230 aaKnown RBP25.22■■□□□ 1.63
CLN3-225ENST00000566824 CCDC30Q5VVM6 783 aa25.21■■□□□ 1.63
CLN3-225ENST00000566824 FHDC1Q9C0D6 1143 aaPredicted RBP25.21■■□□□ 1.63
CLN3-225ENST00000566824 NRXN2Q9P2S2 1712 aa25.2■■□□□ 1.62
CLN3-225ENST00000566824 KIF6Q6ZMV9 814 aa25.19■■□□□ 1.62
CLN3-225ENST00000566824 G2E3Q7L622 706 aa25.19■■□□□ 1.62
CLN3-225ENST00000566824 KLHL34Q8N239 644 aa25.19■■□□□ 1.62
CLN3-225ENST00000566824 HYPKQ9NX55 129 aa25.19■■□□□ 1.62
CLN3-225ENST00000566824 ERVV-1B6SEH8 477 aa25.18■■□□□ 1.62
CLN3-225ENST00000566824 PARP3Q9Y6F1 533 aa25.18■■□□□ 1.62
CLN3-225ENST00000566824 KIF13BQ9NQT8 1826 aa25.18■■□□□ 1.62
CLN3-225ENST00000566824 ARFGEF2Q9Y6D5 1785 aa25.17■■□□□ 1.62
CLN3-225ENST00000566824 CLEC4GQ6UXB4 293 aa25.17■■□□□ 1.62
CLN3-225ENST00000566824 CACNA1FO60840 1977 aa25.17■■□□□ 1.62
CLN3-225ENST00000566824 ZBED9Q6R2W3 1325 aa25.17■■□□□ 1.62
CLN3-225ENST00000566824 ANKRD36CQ5JPF3 1778 aa25.16■■□□□ 1.62
CLN3-225ENST00000566824 SLC4A2P04920 1241 aa25.15■■□□□ 1.62
CLN3-225ENST00000566824 SERPINB2P05120 415 aa25.15■■□□□ 1.62
CLN3-225ENST00000566824 GIGYF2Q6Y7W6 1299 aaKnown RBP25.15■■□□□ 1.62
CLN3-225ENST00000566824 NLGN2Q8NFZ4 835 aa25.15■■□□□ 1.62
CLN3-225ENST00000566824 SYT17Q9BSW7 474 aa25.15■■□□□ 1.62
CLN3-225ENST00000566824 KIAA1551Q9HCM1 1747 aa25.15■■□□□ 1.62
CLN3-225ENST00000566824 GPTP24298 496 aa25.14■■□□□ 1.62
CLN3-225ENST00000566824 CCDC24Q8N4L8 307 aa25.14■■□□□ 1.62
CLN3-225ENST00000566824 NIP7Q9Y221 180 aaKnown RBP eCLIP25.14■■□□□ 1.62
CLN3-225ENST00000566824 ZNF652Q9Y2D9 606 aa25.14■■□□□ 1.62
CLN3-225ENST00000566824 C10orf71Q711Q0 1435 aa25.14■■□□□ 1.62
CLN3-225ENST00000566824 CARMIL3Q8ND23 1372 aa25.14■■□□□ 1.61
CLN3-225ENST00000566824 SETDB2Q96T68 719 aa25.13■■□□□ 1.61
CLN3-225ENST00000566824 STK31Q9BXU1 1019 aa25.13■■□□□ 1.61
CLN3-225ENST00000566824 UBN2Q6ZU65 1347 aa25.13■■□□□ 1.61
CLN3-225ENST00000566824 ANKRD31Q8N7Z5 1873 aa25.13■■□□□ 1.61
CLN3-225ENST00000566824 N4BP2Q86UW6 1770 aaPredicted RBP25.13■■□□□ 1.61
CLN3-225ENST00000566824 RGL2O15211 777 aa25.12■■□□□ 1.61
CLN3-225ENST00000566824 ANKRD13DQ6ZTN6 518 aa25.12■■□□□ 1.61
CLN3-225ENST00000566824 ATP10DQ9P241 1426 aa25.12■■□□□ 1.61
CLN3-225ENST00000566824 FAM177BA6PVY3 158 aa25.12■■□□□ 1.61
CLN3-225ENST00000566824 ZNF34Q8IZ26 560 aa25.12■■□□□ 1.61
CLN3-225ENST00000566824 PLBD2Q8NHP8 589 aa25.12■■□□□ 1.61
CLN3-225ENST00000566824 ZNF428Q96B54 188 aa25.12■■□□□ 1.61
CLN3-225ENST00000566824 CHMP4AQ9BY43 222 aa25.11■■□□□ 1.61
CLN3-225ENST00000566824 PRR5LQ6MZQ0 368 aa25.1■■□□□ 1.61
CLN3-225ENST00000566824 CD2APQ9Y5K6 639 aa25.1■■□□□ 1.61
CLN3-225ENST00000566824 ADCY9O60503 1353 aa25.09■■□□□ 1.61
CLN3-225ENST00000566824 SSH1Q8WYL5 1049 aa25.09■■□□□ 1.61
CLN3-225ENST00000566824 FLIIQ13045 1269 aa25.08■■□□□ 1.6
CLN3-225ENST00000566824 TCIRG1Q13488 830 aa25.08■■□□□ 1.6
CLN3-225ENST00000566824 SUSD4Q5VX71 490 aa25.08■■□□□ 1.6
CLN3-225ENST00000566824 BCL2L13Q9BXK5 485 aa25.08■■□□□ 1.6
CLN3-225ENST00000566824 RIC3Q7Z5B4 369 aa25.07■■□□□ 1.6
CLN3-225ENST00000566824 MRPL50Q8N5N7 158 aaKnown RBP25.07■■□□□ 1.6
CLN3-225ENST00000566824 PXDNLA1KZ92 1463 aa25.06■■□□□ 1.6
CLN3-225ENST00000566824 PI4KAP2A4QPH2 592 aa25.06■■□□□ 1.6
CLN3-225ENST00000566824 ATP5J2-PTCD1G3V325 749 aa25.06■■□□□ 1.6
CLN3-225ENST00000566824 NBPF5PQ86XG9 351 aaPredicted RBP25.06■■□□□ 1.6
CLN3-225ENST00000566824 PI4KAP1Q8N8J0 262 aa25.06■■□□□ 1.6
CLN3-225ENST00000566824 NLRP10Q86W26 655 aa25.05■■□□□ 1.6
CLN3-225ENST00000566824 CNBD1Q8NA66 436 aa25.05■■□□□ 1.6
CLN3-225ENST00000566824 MAP3K2Q9Y2U5 619 aa25.05■■□□□ 1.6
CLN3-225ENST00000566824 A0A0G2JLW4 131 aa25.04■■□□□ 1.6
CLN3-225ENST00000566824 KSR2Q6VAB6 950 aa25.04■■□□□ 1.6
CLN3-225ENST00000566824 NUTM1Q86Y26 1132 aa25.04■■□□□ 1.6
CLN3-225ENST00000566824 YTHDC1Q96MU7 727 aaKnown RBP25.04■■□□□ 1.6
CLN3-225ENST00000566824 MYD88Q99836 296 aa25.04■■□□□ 1.6
CLN3-225ENST00000566824 ISCA1Q9BUE6 129 aa25.04■■□□□ 1.6
CLN3-225ENST00000566824 WWC3Q9ULE0 1092 aa25.04■■□□□ 1.6
CLN3-225ENST00000566824 TNRC6CQ9HCJ0 1690 aaKnown RBP25.04■■□□□ 1.6
CLN3-225ENST00000566824 COL11A2P13942 1736 aaPredicted RBP25.04■■□□□ 1.6
CLN3-225ENST00000566824 NTSR2O95665 410 aa25.03■■□□□ 1.6
CLN3-225ENST00000566824 ABCC12Q96J65 1359 aa25.03■■□□□ 1.6
CLN3-225ENST00000566824 DDX58O95786 925 aaKnown RBP25.02■■□□□ 1.6
CLN3-225ENST00000566824 DPEP1P16444 411 aa25.02■■□□□ 1.6
CLN3-225ENST00000566824 CHRNA5P30532 468 aa25.02■■□□□ 1.6
CLN3-225ENST00000566824 FKBP5Q13451 457 aaPredicted RBP25.02■■□□□ 1.6
CLN3-225ENST00000566824 ERFEQ4G0M1 354 aa25.02■■□□□ 1.6
CLN3-225ENST00000566824 HSP90AB3PQ58FF7 597 aa25.02■■□□□ 1.6
CLN3-225ENST00000566824 SYNE4Q8N205 404 aa25.02■■□□□ 1.6
CLN3-225ENST00000566824 METTL22Q9BUU2 404 aaPredicted RBP25.02■■□□□ 1.6
CLN3-225ENST00000566824 BRCA1P38398 1863 aaKnown RBP25.02■■□□□ 1.6
CLN3-225ENST00000566824 F6X3S4 739 aa25.01■■□□□ 1.59
CLN3-225ENST00000566824 KCNA3P22001 575 aa25.01■■□□□ 1.59
CLN3-225ENST00000566824 RARSP54136 660 aaKnown RBP25■■□□□ 1.59
CLN3-225ENST00000566824 PARP10Q53GL7 1025 aa25■■□□□ 1.59
CLN3-225ENST00000566824 TPTE2Q6XPS3 522 aa25■■□□□ 1.59
CLN3-225ENST00000566824 DLEC1Q9Y238 1755 aa24.99■■□□□ 1.59
CLN3-225ENST00000566824 IGKV5-2P06315 115 aa24.99■■□□□ 1.59
CLN3-225ENST00000566824 CT47B1P0C2W7 299 aaPredicted RBP24.99■■□□□ 1.59
CLN3-225ENST00000566824 ALDH1L2Q3SY69 923 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms