RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 IFIT2P09913 472 aaKnown RBP7.58□□□□□ -1.2
CLN3-223ENST00000566472 CSB-PGBD3P0DP91 1061 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 NEK4P51957 841 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 ZC3H6P61129 1189 aaKnown RBP7.58□□□□□ -1.2
CLN3-223ENST00000566472 TSHZ3Q63HK5 1081 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 UNC5CLQ8IV45 518 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 TTC5Q8N0Z6 440 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 EVI5LQ96CN4 794 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 SUCLG2Q96I99 432 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 TMX3Q96JJ7 454 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 FMNL2Q96PY5 1086 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 METTL22Q9BUU2 404 aaPredicted RBP7.58□□□□□ -1.2
CLN3-223ENST00000566472 LSG1Q9H089 658 aaKnown RBP7.58□□□□□ -1.2
CLN3-223ENST00000566472 SNRKQ9NRH2 765 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 FOXD4L1Q9NU39 408 aa7.58□□□□□ -1.2
CLN3-223ENST00000566472 NEURL1BA8MQ27 555 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 XRCC6P12956 609 aaKnown RBP eCLIP7.57□□□□□ -1.2
CLN3-223ENST00000566472 G3BP1Q13283 466 aaKnown RBP eCLIP7.57□□□□□ -1.2
CLN3-223ENST00000566472 KIAA1211Q6ZU35 1233 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 LRP10Q7Z4F1 713 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 RIC3Q7Z5B4 369 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 KCNB2Q92953 911 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 TM6SF1Q9BZW5 370 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 GRPEL1Q9HAV7 217 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 DIAPH3Q9NSV4 1193 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 PALD1Q9ULE6 856 aa7.57□□□□□ -1.2
CLN3-223ENST00000566472 RGPD5Q99666 1765 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 WDR17Q8IZU2 1322 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 PCDH11XQ9BZA7 1347 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 PCDH11YQ9BZA8 1340 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 PRAMEF22A3QJZ6 481 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 BRD1O95696 1058 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 MBD3O95983 291 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 IGKV5-2P06315 115 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 ZNF445P59923 1031 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 GCKRQ14397 625 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 CWF19L2Q2TBE0 894 aaKnown RBP7.56□□□□□ -1.2
CLN3-223ENST00000566472 RABL6Q3YEC7 729 aaPredicted RBP7.56□□□□□ -1.2
CLN3-223ENST00000566472 TICAM2Q86XR7 235 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 XAGE3Q8WTP9 111 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 KAZALD1Q96I82 304 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 ZNF496Q96IT1 587 aaPredicted RBP7.56□□□□□ -1.2
CLN3-223ENST00000566472 GZF1Q9H116 711 aaPredicted RBP7.56□□□□□ -1.2
CLN3-223ENST00000566472 BICC1Q9H694 974 aaKnown RBP7.56□□□□□ -1.2
CLN3-223ENST00000566472 COPRSQ9NQ92 184 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 PAPPAQ13219 1627 aa7.56□□□□□ -1.2
CLN3-223ENST00000566472 SOS2Q07890 1332 aaPredicted RBP7.55□□□□□ -1.2
CLN3-223ENST00000566472 TNS2Q63HR2 1409 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 ERVV-2B6SEH9 535 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 CYP27B1O15528 508 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 PDIA4P13667 645 aaKnown RBP7.55□□□□□ -1.2
CLN3-223ENST00000566472 CABP4P57796 275 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 SLC39A6Q13433 755 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 NKX1-1Q15270 411 aaPredicted RBP7.55□□□□□ -1.2
CLN3-223ENST00000566472 BRINP3Q76B58 766 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 COPS6Q7L5N1 327 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 AACSQ86V21 672 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 KLHL34Q8N239 644 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 ZGPATQ8N5A5 531 aaKnown RBP7.55□□□□□ -1.2
CLN3-223ENST00000566472 NFATC2IPQ8NCF5 419 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 PLBD2Q8NHP8 589 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 ZSCAN31Q96LW9 406 aaPredicted RBP7.55□□□□□ -1.2
CLN3-223ENST00000566472 TTC14Q96N46 770 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 DNAJC5Q9H3Z4 198 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 LMBRD1Q9NUN5 540 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 ZDHHC9Q9Y397 364 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 SNX14Q9Y5W7 946 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 DDX49Q9Y6V7 483 aaKnown RBP7.55□□□□□ -1.2
CLN3-223ENST00000566472 JCADQ9P266 1359 aa7.55□□□□□ -1.2
CLN3-223ENST00000566472 COL5A2P05997 1499 aaPredicted RBP7.55□□□□□ -1.2
CLN3-223ENST00000566472 WDR33Q9C0J8 1336 aaKnown RBP7.54□□□□□ -1.2
CLN3-223ENST00000566472 SASH1O94885 1247 aa7.54□□□□□ -1.2
CLN3-223ENST00000566472 RFX5P48382 616 aaPredicted RBP7.54□□□□□ -1.2
CLN3-223ENST00000566472 AIMP1Q12904 312 aaKnown RBP7.54□□□□□ -1.2
CLN3-223ENST00000566472 MCTP1Q6DN14 999 aa7.54□□□□□ -1.2
CLN3-223ENST00000566472 ANKRD13DQ6ZTN6 518 aa7.54□□□□□ -1.2
CLN3-223ENST00000566472 MYD88Q99836 296 aa7.54□□□□□ -1.2
CLN3-223ENST00000566472 CARD10Q9BWT7 1032 aa7.54□□□□□ -1.2
CLN3-223ENST00000566472 PA2G4Q9UQ80 394 aaKnown RBP7.54□□□□□ -1.2
CLN3-223ENST00000566472 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.54□□□□□ -1.2
CLN3-223ENST00000566472 MED23Q9ULK4 1368 aa7.54□□□□□ -1.2
CLN3-223ENST00000566472 UBR2Q8IWV8 1755 aa7.54□□□□□ -1.2
CLN3-223ENST00000566472 CCDC171Q6TFL3 1326 aa7.53□□□□□ -1.2
CLN3-223ENST00000566472 KCPQ6ZWJ8 1503 aa7.53□□□□□ -1.2
CLN3-223ENST00000566472 MYL6BP14649 208 aa7.53□□□□□ -1.2
CLN3-223ENST00000566472 ZKSCAN1P17029 563 aaPredicted RBP7.53□□□□□ -1.2
CLN3-223ENST00000566472 VPS53Q5VIR6 699 aa7.53□□□□□ -1.2
CLN3-223ENST00000566472 ZCRB1Q8TBF4 217 aaKnown RBP7.53□□□□□ -1.2
CLN3-223ENST00000566472 EAF2Q96CJ1 260 aaPredicted RBP7.53□□□□□ -1.2
CLN3-223ENST00000566472 IL25Q9H293 177 aa7.53□□□□□ -1.2
CLN3-223ENST00000566472 ALDH8A1Q9H2A2 487 aaPredicted RBP7.53□□□□□ -1.2
CLN3-223ENST00000566472 GPR108Q9NPR9 543 aa7.53□□□□□ -1.2
CLN3-223ENST00000566472 PRDM11Q9NQV5 511 aa7.53□□□□□ -1.2
CLN3-223ENST00000566472 SH2B1Q9NRF2 756 aaPredicted RBP7.53□□□□□ -1.2
CLN3-223ENST00000566472 LIMCH1Q9UPQ0 1083 aa7.53□□□□□ -1.2
CLN3-223ENST00000566472 ABCA3Q99758 1704 aa7.52□□□□□ -1.2
CLN3-223ENST00000566472 XIRP1Q702N8 1843 aaKnown RBP7.52□□□□□ -1.2
CLN3-223ENST00000566472 ARFGEF2Q9Y6D5 1785 aa7.52□□□□□ -1.21
CLN3-223ENST00000566472 RPAP1Q9BWH6 1393 aaPredicted RBP7.52□□□□□ -1.21
CLN3-223ENST00000566472 MAP4K4O95819 1239 aaPredicted RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms