RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 CLASRPQ8N2M8 674 aaKnown RBP16.29■□□□□ 0.2
CLK3-215ENST00000564353 CABLES1Q8TDN4 633 aa16.29■□□□□ 0.2
CLK3-215ENST00000564353 FAM227BQ96M60 508 aa16.29■□□□□ 0.2
CLK3-215ENST00000564353 LSG1Q9H089 658 aaKnown RBP16.29■□□□□ 0.2
CLK3-215ENST00000564353 DBF4Q9UBU7 674 aaPredicted RBP16.29■□□□□ 0.2
CLK3-215ENST00000564353 FAM208AQ9UK61 1670 aaKnown RBP16.28■□□□□ 0.2
CLK3-215ENST00000564353 RAB11FIP3O75154 756 aa16.28■□□□□ 0.2
CLK3-215ENST00000564353 CHGBP05060 677 aa16.28■□□□□ 0.2
CLK3-215ENST00000564353 RUFY3Q7L099 469 aa16.28■□□□□ 0.2
CLK3-215ENST00000564353 CCDC83Q8IWF9 413 aa16.28■□□□□ 0.2
CLK3-215ENST00000564353 NECAB1Q8N987 351 aa16.28■□□□□ 0.2
CLK3-215ENST00000564353 SUCLG2Q96I99 432 aa16.28■□□□□ 0.2
CLK3-215ENST00000564353 JAKMIP1Q96N16 626 aaKnown RBP16.28■□□□□ 0.2
CLK3-215ENST00000564353 BOLA2Q9H3K6 86 aa16.28■□□□□ 0.2
CLK3-215ENST00000564353 BICC1Q9H694 974 aaKnown RBP16.28■□□□□ 0.2
CLK3-215ENST00000564353 FIBPO43427 364 aa16.27■□□□□ 0.2
CLK3-215ENST00000564353 NLRP2Q9NX02 1062 aa16.27■□□□□ 0.2
CLK3-215ENST00000564353 CHMP3Q9Y3E7 222 aa16.27■□□□□ 0.2
CLK3-215ENST00000564353 KCNJ4P48050 445 aa16.27■□□□□ 0.2
CLK3-215ENST00000564353 RAD50Q92878 1312 aa16.27■□□□□ 0.19
CLK3-215ENST00000564353 MCM2P49736 904 aa16.26■□□□□ 0.19
CLK3-215ENST00000564353 ANAPC15P60006 121 aa16.26■□□□□ 0.19
CLK3-215ENST00000564353 MSNP26038 577 aaKnown RBP16.26■□□□□ 0.19
CLK3-215ENST00000564353 RIC3Q7Z5B4 369 aa16.26■□□□□ 0.19
CLK3-215ENST00000564353 TAF6LQ9Y6J9 622 aa16.26■□□□□ 0.19
CLK3-215ENST00000564353 ANKARQ7Z5J8 1434 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 LRSAM1Q6UWE0 723 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 NFATC2IPQ8NCF5 419 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 KCNH5Q8NCM2 988 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 EAF2Q96CJ1 260 aaPredicted RBP16.25■□□□□ 0.19
CLK3-215ENST00000564353 KAZALD1Q96I82 304 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 PPP1R9BQ96SB3 815 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 CHRNA2Q15822 529 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 KSR2Q6VAB6 950 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 ARHGEF25Q86VW2 580 aa16.25■□□□□ 0.19
CLK3-215ENST00000564353 PLCB2Q00722 1185 aa16.24■□□□□ 0.19
CLK3-215ENST00000564353 ECHDC1Q9NTX5 307 aa16.24■□□□□ 0.19
CLK3-215ENST00000564353 SASH1O94885 1247 aa16.24■□□□□ 0.19
CLK3-215ENST00000564353 FAM173BQ6P4H8 233 aa16.24■□□□□ 0.19
CLK3-215ENST00000564353 VPS37CA5D8V6 355 aaPredicted RBP16.23■□□□□ 0.19
CLK3-215ENST00000564353 GLRX3O76003 335 aaKnown RBP16.23■□□□□ 0.19
CLK3-215ENST00000564353 SYT1P21579 422 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 FERMT3Q86UX7 667 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 BABAM1Q9NWV8 329 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 ATP5J2-PTCD1G3V325 749 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 PTCD1O75127 700 aaKnown RBP16.23■□□□□ 0.19
CLK3-215ENST00000564353 EPHA10Q5JZY3 1008 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 ZSCAN30Q86W11 494 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 MYD88Q99836 296 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 SMC3Q9UQE7 1217 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 RPAP1Q9BWH6 1393 aaPredicted RBP16.23■□□□□ 0.19
CLK3-215ENST00000564353 LRRC37A3O60309 1634 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 RGPD2P0DJD1 1756 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 MARF1Q9Y4F3 1742 aaKnown RBP16.23■□□□□ 0.19
CLK3-215ENST00000564353 CSB-PGBD3P0DP91 1061 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 STK3Q13188 491 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 KRT28Q7Z3Y7 464 aa16.23■□□□□ 0.19
CLK3-215ENST00000564353 GRM8O00222 908 aa16.22■□□□□ 0.19
CLK3-215ENST00000564353 NMIQ13287 307 aaPredicted RBP16.22■□□□□ 0.19
CLK3-215ENST00000564353 PROSER2Q86WR7 435 aaPredicted RBP16.22■□□□□ 0.19
CLK3-215ENST00000564353 XAGE3Q8WTP9 111 aa16.22■□□□□ 0.19
CLK3-215ENST00000564353 INTS4Q96HW7 963 aaKnown RBP16.22■□□□□ 0.19
CLK3-215ENST00000564353 TTC14Q96N46 770 aa16.22■□□□□ 0.19
CLK3-215ENST00000564353 PPFIA3O75145 1194 aa16.22■□□□□ 0.19
CLK3-215ENST00000564353 IGKV5-2P06315 115 aa16.22■□□□□ 0.19
CLK3-215ENST00000564353 G3BP1Q13283 466 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLK3-215ENST00000564353 COPS6Q7L5N1 327 aa16.22■□□□□ 0.19
CLK3-215ENST00000564353 ZNF830Q96NB3 372 aaPredicted RBP16.22■□□□□ 0.19
CLK3-215ENST00000564353 PDRG1Q9NUG6 133 aa16.22■□□□□ 0.19
CLK3-215ENST00000564353 LIMCH1Q9UPQ0 1083 aa16.22■□□□□ 0.19
CLK3-215ENST00000564353 NPHP4O75161 1426 aaPredicted RBP16.21■□□□□ 0.19
CLK3-215ENST00000564353 GJB2P29033 226 aa16.21■□□□□ 0.19
CLK3-215ENST00000564353 CHD2O14647 1828 aaKnown RBP16.21■□□□□ 0.19
CLK3-215ENST00000564353 LTN1O94822 1766 aa16.21■□□□□ 0.19
CLK3-215ENST00000564353 AOX1Q06278 1338 aa16.21■□□□□ 0.19
CLK3-215ENST00000564353 WDR33Q9C0J8 1336 aaKnown RBP16.21■□□□□ 0.19
CLK3-215ENST00000564353 A0A0D9SFI3 127 aa16.21■□□□□ 0.19
CLK3-215ENST00000564353 STX6O43752 255 aa16.21■□□□□ 0.19
CLK3-215ENST00000564353 FSD1Q9BTV5 496 aa16.21■□□□□ 0.19
CLK3-215ENST00000564353 DNM1Q05193 864 aaKnown RBP16.2■□□□□ 0.18
CLK3-215ENST00000564353 SLFNL1Q499Z3 407 aa16.2■□□□□ 0.18
CLK3-215ENST00000564353 AMOTQ4VCS5 1084 aa16.2■□□□□ 0.18
CLK3-215ENST00000564353 HYPKQ9NX55 129 aa16.2■□□□□ 0.18
CLK3-215ENST00000564353 USP16Q9Y5T5 823 aa16.2■□□□□ 0.18
CLK3-215ENST00000564353 ADAMTSL3P82987 1691 aa16.2■□□□□ 0.18
CLK3-215ENST00000564353 MBD3O95983 291 aa16.2■□□□□ 0.18
CLK3-215ENST00000564353 PTMAP06454 111 aaKnown RBP16.2■□□□□ 0.18
CLK3-215ENST00000564353 HSP90AB4PQ58FF6 505 aa16.2■□□□□ 0.18
CLK3-215ENST00000564353 RBM8AQ9Y5S9 174 aaKnown RBP16.2■□□□□ 0.18
CLK3-215ENST00000564353 PDIA6Q15084 440 aa16.19■□□□□ 0.18
CLK3-215ENST00000564353 ZNF496Q96IT1 587 aaPredicted RBP16.19■□□□□ 0.18
CLK3-215ENST00000564353 TSPY26PQ9H489 355 aa16.19■□□□□ 0.18
CLK3-215ENST00000564353 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.19■□□□□ 0.18
CLK3-215ENST00000564353 ZSCAN22P10073 491 aaPredicted RBP16.19■□□□□ 0.18
CLK3-215ENST00000564353 ME3Q16798 604 aa16.19■□□□□ 0.18
CLK3-215ENST00000564353 RAPGEF4Q8WZA2 1011 aa16.19■□□□□ 0.18
CLK3-215ENST00000564353 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.19■□□□□ 0.18
CLK3-215ENST00000564353 NFAT5O94916 1531 aa16.19■□□□□ 0.18
CLK3-215ENST00000564353 PXDNLA1KZ92 1463 aa16.19■□□□□ 0.18
CLK3-215ENST00000564353 ZNF790Q6PG37 636 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms