RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 G2E3Q7L622 706 aa12.66□□□□□ -0.38
CLK3-208ENST00000562626 ZNF784Q8NCA9 323 aaPredicted RBP12.66□□□□□ -0.38
CLK3-208ENST00000562626 PHAXQ9H814 394 aaKnown RBP12.66□□□□□ -0.38
CLK3-208ENST00000562626 NARFQ9UHQ1 456 aa12.66□□□□□ -0.38
CLK3-208ENST00000562626 TNRC6CQ9HCJ0 1690 aaKnown RBP12.66□□□□□ -0.38
CLK3-208ENST00000562626 DLEC1Q9Y238 1755 aa12.66□□□□□ -0.38
CLK3-208ENST00000562626 TAF1P21675 1872 aa12.65□□□□□ -0.38
CLK3-208ENST00000562626 ERBB4Q15303 1308 aa12.65□□□□□ -0.38
CLK3-208ENST00000562626 MYH3P11055 1940 aa12.65□□□□□ -0.38
CLK3-208ENST00000562626 RFC4P35249 363 aa12.65□□□□□ -0.38
CLK3-208ENST00000562626 HLFQ16534 295 aa12.65□□□□□ -0.38
CLK3-208ENST00000562626 DDX21Q9NR30 783 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLK3-208ENST00000562626 DZIP3Q86Y13 1208 aaKnown RBP12.64□□□□□ -0.39
CLK3-208ENST00000562626 FLAD1Q8NFF5 587 aa12.64□□□□□ -0.39
CLK3-208ENST00000562626 XAGE3Q8WTP9 111 aa12.64□□□□□ -0.39
CLK3-208ENST00000562626 MTFR1LQ9H019 292 aa12.64□□□□□ -0.39
CLK3-208ENST00000562626 DDR1Q08345 913 aa12.63□□□□□ -0.39
CLK3-208ENST00000562626 COPS6Q7L5N1 327 aa12.63□□□□□ -0.39
CLK3-208ENST00000562626 ZBTB3Q9H5J0 574 aa12.63□□□□□ -0.39
CLK3-208ENST00000562626 AIMP1Q12904 312 aaKnown RBP12.62□□□□□ -0.39
CLK3-208ENST00000562626 TBC1D9BQ66K14 1250 aa12.62□□□□□ -0.39
CLK3-208ENST00000562626 SLC16A10Q8TF71 515 aa12.62□□□□□ -0.39
CLK3-208ENST00000562626 ARXQ96QS3 562 aa12.62□□□□□ -0.39
CLK3-208ENST00000562626 DBF4Q9UBU7 674 aaPredicted RBP12.62□□□□□ -0.39
CLK3-208ENST00000562626 MAP3K15Q6ZN16 1313 aa12.62□□□□□ -0.39
CLK3-208ENST00000562626 ADCY9O60503 1353 aa12.61□□□□□ -0.39
CLK3-208ENST00000562626 SPEF2Q9C093 1822 aa12.61□□□□□ -0.39
CLK3-208ENST00000562626 HMGB2P26583 209 aaKnown RBP12.61□□□□□ -0.39
CLK3-208ENST00000562626 NFIXQ14938 502 aa12.61□□□□□ -0.39
CLK3-208ENST00000562626 CCDC30Q5VVM6 783 aa12.61□□□□□ -0.39
CLK3-208ENST00000562626 SSH1Q8WYL5 1049 aa12.61□□□□□ -0.39
CLK3-208ENST00000562626 ZNF428Q96B54 188 aa12.61□□□□□ -0.39
CLK3-208ENST00000562626 BCL2L13Q9BXK5 485 aa12.61□□□□□ -0.39
CLK3-208ENST00000562626 A0A087WZG4 1122 aa12.6□□□□□ -0.39
CLK3-208ENST00000562626 ZPR1O75312 459 aa12.6□□□□□ -0.39
CLK3-208ENST00000562626 SLC4A2P04920 1241 aa12.6□□□□□ -0.39
CLK3-208ENST00000562626 MMP10P09238 476 aa12.6□□□□□ -0.39
CLK3-208ENST00000562626 TM4SF1P30408 202 aa12.6□□□□□ -0.39
CLK3-208ENST00000562626 BICDL1Q6ZP65 573 aa12.6□□□□□ -0.39
CLK3-208ENST00000562626 SPON1Q9HCB6 807 aa12.6□□□□□ -0.39
CLK3-208ENST00000562626 UBN2Q6ZU65 1347 aa12.6□□□□□ -0.39
CLK3-208ENST00000562626 CARMIL3Q8ND23 1372 aa12.59□□□□□ -0.39
CLK3-208ENST00000562626 MRPL50Q8N5N7 158 aaKnown RBP12.59□□□□□ -0.39
CLK3-208ENST00000562626 HYPKQ9NX55 129 aa12.59□□□□□ -0.39
CLK3-208ENST00000562626 ATP10DQ9P241 1426 aa12.59□□□□□ -0.39
CLK3-208ENST00000562626 POLRMTO00411 1230 aaKnown RBP12.58□□□□□ -0.4
CLK3-208ENST00000562626 KIF6Q6ZMV9 814 aa12.58□□□□□ -0.4
CLK3-208ENST00000562626 COL4A1P02462 1669 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 C10orf71Q711Q0 1435 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 ERVV-1B6SEH8 477 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 GPTP24298 496 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 FLIIQ13045 1269 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 GIGYF2Q6Y7W6 1299 aaKnown RBP12.57□□□□□ -0.4
CLK3-208ENST00000562626 ZNF34Q8IZ26 560 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 NLGN1Q8N2Q7 840 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 CCDC24Q8N4L8 307 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 STK31Q9BXU1 1019 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 ARFGEF1Q9Y6D6 1849 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 CCDC88AQ3V6T2 1871 aa12.57□□□□□ -0.4
CLK3-208ENST00000562626 F6X3S4 739 aa12.56□□□□□ -0.4
CLK3-208ENST00000562626 BCAR3O75815 825 aa12.56□□□□□ -0.4
CLK3-208ENST00000562626 RARSP54136 660 aaKnown RBP12.56□□□□□ -0.4
CLK3-208ENST00000562626 ANKRD13DQ6ZTN6 518 aa12.56□□□□□ -0.4
CLK3-208ENST00000562626 PLBD2Q8NHP8 589 aa12.56□□□□□ -0.4
CLK3-208ENST00000562626 TNNQ9UQP3 1299 aa12.56□□□□□ -0.4
CLK3-208ENST00000562626 SLX4Q8IY92 1834 aa12.55□□□□□ -0.4
CLK3-208ENST00000562626 PI4KAP2A4QPH2 592 aa12.55□□□□□ -0.4
CLK3-208ENST00000562626 FAM177BA6PVY3 158 aa12.55□□□□□ -0.4
CLK3-208ENST00000562626 ATP5J2-PTCD1G3V325 749 aa12.55□□□□□ -0.4
CLK3-208ENST00000562626 CLEC4GQ6UXB4 293 aa12.55□□□□□ -0.4
CLK3-208ENST00000562626 NPM2Q86SE8 214 aaKnown RBP12.55□□□□□ -0.4
CLK3-208ENST00000562626 PI4KAP1Q8N8J0 262 aa12.55□□□□□ -0.4
CLK3-208ENST00000562626 NIP7Q9Y221 180 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLK3-208ENST00000562626 MAP3K2Q9Y2U5 619 aa12.55□□□□□ -0.4
CLK3-208ENST00000562626 ABCC12Q96J65 1359 aa12.55□□□□□ -0.4
CLK3-208ENST00000562626 A0A1B0GUL6 1792 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 SERPINB2P05120 415 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 TCIRG1Q13488 830 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 ALDH1L2Q3SY69 923 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 SUSD4Q5VX71 490 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 KSR2Q6VAB6 950 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 SYNE4Q8N205 404 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 ISCA1Q9BUE6 129 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 SMC4Q9NTJ3 1288 aa12.54□□□□□ -0.4
CLK3-208ENST00000562626 PXDNLA1KZ92 1463 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 RGL2O15211 777 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 IGKV5-2P06315 115 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 CT47B1P0C2W7 299 aaPredicted RBP12.53□□□□□ -0.4
CLK3-208ENST00000562626 POLD1P28340 1107 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 FKBP5Q13451 457 aaPredicted RBP12.53□□□□□ -0.4
CLK3-208ENST00000562626 PRR5LQ6MZQ0 368 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 RIC3Q7Z5B4 369 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 NLRP10Q86W26 655 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 NLGN2Q8NFZ4 835 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 MYD88Q99836 296 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 FHDC1Q9C0D6 1143 aaPredicted RBP12.53□□□□□ -0.4
CLK3-208ENST00000562626 PPP1R1BQ9UD71 204 aaPredicted RBP12.53□□□□□ -0.4
CLK3-208ENST00000562626 ZNF652Q9Y2D9 606 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 PARP3Q9Y6F1 533 aa12.53□□□□□ -0.4
CLK3-208ENST00000562626 NTSR2O95665 410 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms