RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 L3MBTL2Q969R5 705 aa8.96□□□□□ -0.98
VPS13C-210ENST00000561258 NOD1Q9Y239 953 aa8.96□□□□□ -0.98
VPS13C-210ENST00000561258 BACH1O14867 736 aa8.95□□□□□ -0.98
VPS13C-210ENST00000561258 PSME1Q06323 249 aa8.95□□□□□ -0.98
VPS13C-210ENST00000561258 TBCELQ5QJ74 424 aa8.95□□□□□ -0.98
VPS13C-210ENST00000561258 LRRC69Q6ZNQ3 347 aa8.95□□□□□ -0.98
VPS13C-210ENST00000561258 SYT9Q86SS6 491 aa8.95□□□□□ -0.98
VPS13C-210ENST00000561258 SEMA6BQ9H3T3 888 aa8.95□□□□□ -0.98
VPS13C-210ENST00000561258 SERPINA10Q9UK55 444 aa8.95□□□□□ -0.98
VPS13C-210ENST00000561258 ELOA3CA0A087WX78 387 aaPredicted RBP8.94□□□□□ -0.98
VPS13C-210ENST00000561258 ELOA3DA6NLF2 546 aaPredicted RBP8.94□□□□□ -0.98
VPS13C-210ENST00000561258 LAMC2Q13753 1193 aa8.94□□□□□ -0.98
VPS13C-210ENST00000561258 NCOA4Q13772 614 aa8.94□□□□□ -0.98
VPS13C-210ENST00000561258 ELOA3BQ3SY89 546 aa8.94□□□□□ -0.98
VPS13C-210ENST00000561258 ELOA3Q8NG57 546 aa8.94□□□□□ -0.98
VPS13C-210ENST00000561258 CCDC97Q96F63 343 aaPredicted RBP8.94□□□□□ -0.98
VPS13C-210ENST00000561258 NOS2P35228 1153 aa8.93□□□□□ -0.98
VPS13C-210ENST00000561258 GATA4P43694 442 aa8.93□□□□□ -0.98
VPS13C-210ENST00000561258 SH3PXD2AQ5TCZ1 1133 aa8.93□□□□□ -0.98
VPS13C-210ENST00000561258 TNS4Q8IZW8 715 aa8.93□□□□□ -0.98
VPS13C-210ENST00000561258 DEPDC4Q8N2C3 294 aa8.93□□□□□ -0.98
VPS13C-210ENST00000561258 MDFIQ99750 246 aa8.93□□□□□ -0.98
VPS13C-210ENST00000561258 ALG2Q9H553 416 aa8.93□□□□□ -0.98
VPS13C-210ENST00000561258 EML1O00423 815 aa8.92□□□□□ -0.98
VPS13C-210ENST00000561258 SPATA31C1P0DKV0 1188 aa8.92□□□□□ -0.98
VPS13C-210ENST00000561258 EPHA4P54764 986 aa8.92□□□□□ -0.98
VPS13C-210ENST00000561258 SFSWAPQ12872 951 aaKnown RBP8.92□□□□□ -0.98
VPS13C-210ENST00000561258 TEAD4Q15561 434 aa8.92□□□□□ -0.98
VPS13C-210ENST00000561258 SLC9A9Q8IVB4 645 aa8.92□□□□□ -0.98
VPS13C-210ENST00000561258 C7orf43Q8WVR3 580 aa8.92□□□□□ -0.98
VPS13C-210ENST00000561258 ZNF232Q9UNY5 417 aa8.92□□□□□ -0.98
VPS13C-210ENST00000561258 ALAS2P22557 587 aa8.91□□□□□ -0.98
VPS13C-210ENST00000561258 SLC30A3Q99726 388 aa8.91□□□□□ -0.98
VPS13C-210ENST00000561258 NEUROD4Q9HD90 331 aa8.9□□□□□ -0.98
VPS13C-210ENST00000561258 ZBTB7CA1YPR0 619 aa8.89□□□□□ -0.99
VPS13C-210ENST00000561258 FAM229AH3BQW9 127 aa8.89□□□□□ -0.99
VPS13C-210ENST00000561258 LZTS3O60299 673 aaPredicted RBP8.89□□□□□ -0.99
VPS13C-210ENST00000561258 C8orf86Q6ZUL3 223 aa8.89□□□□□ -0.99
VPS13C-210ENST00000561258 STARD13Q9Y3M8 1113 aa8.89□□□□□ -0.99
VPS13C-210ENST00000561258 USP17L5A8MUK1 530 aa8.88□□□□□ -0.99
VPS13C-210ENST00000561258 M0R082 166 aa8.88□□□□□ -0.99
VPS13C-210ENST00000561258 SIN3BO75182 1162 aa8.88□□□□□ -0.99
VPS13C-210ENST00000561258 COL9A3Q14050 684 aaPredicted RBP8.88□□□□□ -0.99
VPS13C-210ENST00000561258 RAB44Q7Z6P3 723 aaPredicted RBP8.88□□□□□ -0.99
VPS13C-210ENST00000561258 NFATC2IPQ8NCF5 419 aa8.88□□□□□ -0.99
VPS13C-210ENST00000561258 ZNF417Q8TAU3 575 aa8.88□□□□□ -0.99
VPS13C-210ENST00000561258 ZNF587Q96SQ5 575 aaPredicted RBP8.88□□□□□ -0.99
VPS13C-210ENST00000561258 TRAIPQ9BWF2 469 aa8.88□□□□□ -0.99
VPS13C-210ENST00000561258 SERTM1A2A2V5 107 aa8.87□□□□□ -0.99
VPS13C-210ENST00000561258 ADARB2-AS1A8MUL3 147 aa8.87□□□□□ -0.99
VPS13C-210ENST00000561258 RHPN1Q8TCX5 695 aa8.87□□□□□ -0.99
VPS13C-210ENST00000561258 KIAA1024Q9UPX6 916 aa8.87□□□□□ -0.99
VPS13C-210ENST00000561258 ZBTB7BO15156 539 aaPredicted RBP8.86□□□□□ -0.99
VPS13C-210ENST00000561258 ALBP02768 609 aa8.86□□□□□ -0.99
VPS13C-210ENST00000561258 RSPO4Q2I0M5 234 aaPredicted RBP8.86□□□□□ -0.99
VPS13C-210ENST00000561258 PRRT3Q5FWE3 981 aa8.86□□□□□ -0.99
VPS13C-210ENST00000561258 HSH2DQ96JZ2 352 aa8.86□□□□□ -0.99
VPS13C-210ENST00000561258 KRTAP4-8Q9BYQ9 185 aa8.86□□□□□ -0.99
VPS13C-210ENST00000561258 SPDYE3A6NKU9 549 aa8.85□□□□□ -0.99
VPS13C-210ENST00000561258 RANGAP1P46060 587 aaPredicted RBP8.85□□□□□ -0.99
VPS13C-210ENST00000561258 SPEM2Q0P670 501 aa8.85□□□□□ -0.99
VPS13C-210ENST00000561258 ZMYM1Q5SVZ6 1142 aa8.85□□□□□ -0.99
VPS13C-210ENST00000561258 MICALL1Q8N3F8 863 aa8.85□□□□□ -0.99
VPS13C-210ENST00000561258 TPCN2Q8NHX9 752 aa8.85□□□□□ -0.99
VPS13C-210ENST00000561258 TNFRSF25Q93038 417 aa8.85□□□□□ -0.99
VPS13C-210ENST00000561258 TPSG1Q9NRR2 321 aa8.85□□□□□ -0.99
VPS13C-210ENST00000561258 HCN4Q9Y3Q4 1203 aa8.85□□□□□ -0.99
VPS13C-210ENST00000561258 APBA3O96018 575 aa8.84□□□□□ -0.99
VPS13C-210ENST00000561258 TSPAN10Q9H1Z9 355 aaPredicted RBP8.84□□□□□ -0.99
VPS13C-210ENST00000561258 GPC6Q9Y625 555 aaPredicted RBP8.84□□□□□ -0.99
VPS13C-210ENST00000561258 POM121CA8CG34 1229 aa8.83□□□□□ -1
VPS13C-210ENST00000561258 ADH7P40394 386 aa8.83□□□□□ -1
VPS13C-210ENST00000561258 CLDN10P78369 228 aa8.83□□□□□ -1
VPS13C-210ENST00000561258 NKAPLQ5M9Q1 402 aa8.83□□□□□ -1
VPS13C-210ENST00000561258 CCDC102BQ68D86 513 aa8.83□□□□□ -1
VPS13C-210ENST00000561258 ADAMTS19Q8TE59 1207 aa8.83□□□□□ -1
VPS13C-210ENST00000561258 CEP63Q96MT8 703 aa8.83□□□□□ -1
VPS13C-210ENST00000561258 BRD7Q9NPI1 651 aa8.83□□□□□ -1
VPS13C-210ENST00000561258 SFI1A8K8P3 1242 aa8.82□□□□□ -1
VPS13C-210ENST00000561258 GRIK4Q16099 956 aa8.82□□□□□ -1
VPS13C-210ENST00000561258 TRIM50Q86XT4 487 aa8.82□□□□□ -1
VPS13C-210ENST00000561258 ZNF280CQ8ND82 737 aa8.82□□□□□ -1
VPS13C-210ENST00000561258 PHACTR1Q9C0D0 580 aa8.82□□□□□ -1
VPS13C-210ENST00000561258 NID1P14543 1247 aa8.81□□□□□ -1
VPS13C-210ENST00000561258 PSMA6P60900 246 aaKnown RBP8.81□□□□□ -1
VPS13C-210ENST00000561258 TRIM28Q13263 835 aaKnown RBP8.81□□□□□ -1
VPS13C-210ENST00000561258 FOXD4L6Q3SYB3 417 aaPredicted RBP8.81□□□□□ -1
VPS13C-210ENST00000561258 FOXD4L3Q6VB84 417 aaPredicted RBP8.81□□□□□ -1
VPS13C-210ENST00000561258 WWC1Q8IX03 1113 aa8.81□□□□□ -1
VPS13C-210ENST00000561258 PRDM6Q9NQX0 595 aa8.81□□□□□ -1
VPS13C-210ENST00000561258 CCDC9Q9Y3X0 531 aaKnown RBP8.81□□□□□ -1
VPS13C-210ENST00000561258 USP17L3A6NCW0 530 aa8.8□□□□□ -1
VPS13C-210ENST00000561258 USP17L4A6NCW7 530 aa8.8□□□□□ -1
VPS13C-210ENST00000561258 C1orf53Q5VUE5 145 aa8.8□□□□□ -1
VPS13C-210ENST00000561258 USP17L2Q6R6M4 530 aa8.8□□□□□ -1
VPS13C-210ENST00000561258 C20orf204Q6ZNR8 217 aa8.8□□□□□ -1
VPS13C-210ENST00000561258 USP17L1Q7RTZ2 530 aa8.8□□□□□ -1
VPS13C-210ENST00000561258 NPM2Q86SE8 214 aaKnown RBP8.8□□□□□ -1
VPS13C-210ENST00000561258 RETREG2Q8NC44 543 aa8.8□□□□□ -1
VPS13C-210ENST00000561258 KCNH4Q9UQ05 1017 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms