RNA–Protein interactions for RNA: ENST00000560005.6

PSEN1-225, Transcript of presenilin 1, humanhuman

TSL 3

Gene PSEN1, Length 699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-225ENST00000560005 LDHDQ86WU2 507 aa27.38■■□□□ 1.97
PSEN1-225ENST00000560005 TEX13AQ9BXU3 409 aaPredicted RBP27.38■■□□□ 1.97
PSEN1-225ENST00000560005 PRDM10Q9NQV6 1147 aa27.38■■□□□ 1.97
PSEN1-225ENST00000560005 ST5P78524 1137 aa27.37■■□□□ 1.97
PSEN1-225ENST00000560005 SOGA3Q5TF21 947 aa27.37■■□□□ 1.97
PSEN1-225ENST00000560005 TAF1DQ9H5J8 278 aaPredicted RBP27.37■■□□□ 1.97
PSEN1-225ENST00000560005 CCER2I3L3R5 266 aa27.36■■□□□ 1.97
PSEN1-225ENST00000560005 DIAPH1O60610 1272 aaKnown RBP27.36■■□□□ 1.97
PSEN1-225ENST00000560005 CAMTA2O94983 1202 aa27.36■■□□□ 1.97
PSEN1-225ENST00000560005 TEFQ10587 303 aa27.36■■□□□ 1.97
PSEN1-225ENST00000560005 AIDAQ96BJ3 306 aa27.36■■□□□ 1.97
PSEN1-225ENST00000560005 MASTLQ96GX5 879 aa27.36■■□□□ 1.97
PSEN1-225ENST00000560005 ARFGEF2Q9Y6D5 1785 aa27.35■■□□□ 1.97
PSEN1-225ENST00000560005 A1BGP04217 495 aa27.35■■□□□ 1.97
PSEN1-225ENST00000560005 VEGFBP49765 207 aa27.35■■□□□ 1.97
PSEN1-225ENST00000560005 NPM2Q86SE8 214 aaKnown RBP27.35■■□□□ 1.97
PSEN1-225ENST00000560005 L3MBTL3Q96JM7 780 aaPredicted RBP27.35■■□□□ 1.97
PSEN1-225ENST00000560005 SCN4AP35499 1836 aa27.34■■□□□ 1.97
PSEN1-225ENST00000560005 CTCFP49711 727 aaPredicted RBP27.34■■□□□ 1.97
PSEN1-225ENST00000560005 IL17REQ8NFR9 667 aa27.34■■□□□ 1.97
PSEN1-225ENST00000560005 TMEM88BA6NKF7 163 aa27.33■■□□□ 1.97
PSEN1-225ENST00000560005 EAPPQ56P03 285 aaPredicted RBP27.32■■□□□ 1.96
PSEN1-225ENST00000560005 FMNL2Q96PY5 1086 aa27.32■■□□□ 1.96
PSEN1-225ENST00000560005 SIPA1L3O60292 1781 aaPredicted RBP27.31■■□□□ 1.96
PSEN1-225ENST00000560005 ITGBL1O95965 494 aaPredicted RBP27.31■■□□□ 1.96
PSEN1-225ENST00000560005 CCDC93Q567U6 631 aa27.31■■□□□ 1.96
PSEN1-225ENST00000560005 C7orf43Q8WVR3 580 aa27.31■■□□□ 1.96
PSEN1-225ENST00000560005 BCORQ6W2J9 1755 aa27.3■■□□□ 1.96
PSEN1-225ENST00000560005 GNAT3A8MTJ3 354 aa27.3■■□□□ 1.96
PSEN1-225ENST00000560005 DZIP3Q86Y13 1208 aaKnown RBP27.3■■□□□ 1.96
PSEN1-225ENST00000560005 ZNF541Q9H0D2 1346 aa27.3■■□□□ 1.96
PSEN1-225ENST00000560005 LBX1P52954 281 aa27.28■■□□□ 1.96
PSEN1-225ENST00000560005 NBPF5PQ86XG9 351 aaPredicted RBP27.28■■□□□ 1.96
PSEN1-225ENST00000560005 GAS2L2Q8NHY3 880 aa27.28■■□□□ 1.96
PSEN1-225ENST00000560005 ZNF277Q9NRM2 450 aaPredicted RBP27.28■■□□□ 1.96
PSEN1-225ENST00000560005 WBP1LQ9NX94 342 aa27.28■■□□□ 1.96
PSEN1-225ENST00000560005 CLEC11AQ9Y240 323 aa27.28■■□□□ 1.96
PSEN1-225ENST00000560005 FKBP4Q02790 459 aaKnown RBP eCLIP27.27■■□□□ 1.96
PSEN1-225ENST00000560005 HACL1Q9UJ83 578 aa27.27■■□□□ 1.96
PSEN1-225ENST00000560005 KCNQ3O43525 872 aa27.26■■□□□ 1.95
PSEN1-225ENST00000560005 PIP4K2AP48426 406 aaPredicted RBP27.26■■□□□ 1.95
PSEN1-225ENST00000560005 PRKRIP1Q9H875 184 aaPredicted RBP27.26■■□□□ 1.95
PSEN1-225ENST00000560005 U2SURPO15042 1029 aaKnown RBP27.25■■□□□ 1.95
PSEN1-225ENST00000560005 NPR1P16066 1061 aa27.25■■□□□ 1.95
PSEN1-225ENST00000560005 EPHX2P34913 555 aa27.25■■□□□ 1.95
PSEN1-225ENST00000560005 CC2D1BQ5T0F9 858 aaKnown RBP27.25■■□□□ 1.95
PSEN1-225ENST00000560005 OLFM4Q6UX06 510 aa27.25■■□□□ 1.95
PSEN1-225ENST00000560005 ADAMTSL1Q8N6G6 1762 aa27.25■■□□□ 1.95
PSEN1-225ENST00000560005 COL3A1P02461 1466 aaPredicted RBP27.23■■□□□ 1.95
PSEN1-225ENST00000560005 RNF123Q5XPI4 1314 aa27.22■■□□□ 1.95
PSEN1-225ENST00000560005 RASSF10A6NK89 507 aa27.22■■□□□ 1.95
PSEN1-225ENST00000560005 BTBD11A6QL63 1104 aa27.22■■□□□ 1.95
PSEN1-225ENST00000560005 MAP1SQ66K74 1059 aaPredicted RBP27.22■■□□□ 1.95
PSEN1-225ENST00000560005 USP16Q9Y5T5 823 aa27.22■■□□□ 1.95
PSEN1-225ENST00000560005 CEMIPQ8WUJ3 1361 aa27.22■■□□□ 1.95
PSEN1-225ENST00000560005 PER1O15534 1290 aaPredicted RBP27.21■■□□□ 1.95
PSEN1-225ENST00000560005 RALBP1Q15311 655 aa27.21■■□□□ 1.95
PSEN1-225ENST00000560005 DEFB115Q30KQ5 88 aa27.21■■□□□ 1.95
PSEN1-225ENST00000560005 CLEC4GQ6UXB4 293 aa27.21■■□□□ 1.95
PSEN1-225ENST00000560005 CNTROBQ8N137 903 aa27.21■■□□□ 1.95
PSEN1-225ENST00000560005 ZNF652Q9Y2D9 606 aa27.21■■□□□ 1.95
PSEN1-225ENST00000560005 KLRG2A4D1S0 409 aaPredicted RBP27.2■■□□□ 1.94
PSEN1-225ENST00000560005 HSPA8P11142 646 aaKnown RBP27.2■■□□□ 1.94
PSEN1-225ENST00000560005 PNMA8AQ86V59 439 aaPredicted RBP27.2■■□□□ 1.94
PSEN1-225ENST00000560005 RTKN2Q8IZC4 609 aa27.2■■□□□ 1.94
PSEN1-225ENST00000560005 PRAMEF22A3QJZ6 481 aa27.19■■□□□ 1.94
PSEN1-225ENST00000560005 FZD9O00144 591 aa27.18■■□□□ 1.94
PSEN1-225ENST00000560005 IARSP41252 1262 aaKnown RBP27.18■■□□□ 1.94
PSEN1-225ENST00000560005 TPTE2Q6XPS3 522 aa27.18■■□□□ 1.94
PSEN1-225ENST00000560005 ABHD8Q96I13 439 aa27.18■■□□□ 1.94
PSEN1-225ENST00000560005 WDR33Q9C0J8 1336 aaKnown RBP27.17■■□□□ 1.94
PSEN1-225ENST00000560005 FAM177BA6PVY3 158 aa27.17■■□□□ 1.94
PSEN1-225ENST00000560005 ABT1Q9ULW3 272 aaKnown RBP27.17■■□□□ 1.94
PSEN1-225ENST00000560005 NIP7Q9Y221 180 aaKnown RBP eCLIP27.17■■□□□ 1.94
PSEN1-225ENST00000560005 SYNE4Q8N205 404 aa27.16■■□□□ 1.94
PSEN1-225ENST00000560005 SLC34A2O95436 690 aa27.15■■□□□ 1.94
PSEN1-225ENST00000560005 MAP2K1Q02750 393 aaPredicted RBP27.15■■□□□ 1.94
PSEN1-225ENST00000560005 CNGB1Q14028 1251 aaPredicted RBP27.15■■□□□ 1.94
PSEN1-225ENST00000560005 GPC2Q8N158 579 aa27.15■■□□□ 1.94
PSEN1-225ENST00000560005 PHACTR3Q96KR7 559 aa27.15■■□□□ 1.94
PSEN1-225ENST00000560005 NPC1L1Q9UHC9 1359 aa27.14■■□□□ 1.94
PSEN1-225ENST00000560005 FAM161AQ3B820 660 aa27.14■■□□□ 1.94
PSEN1-225ENST00000560005 SNRPA1P09661 255 aaKnown RBP27.13■■□□□ 1.93
PSEN1-225ENST00000560005 ALDH1B1P30837 517 aa27.12■■□□□ 1.93
PSEN1-225ENST00000560005 DDX21Q9NR30 783 aaKnown RBP eCLIP27.12■■□□□ 1.93
PSEN1-225ENST00000560005 NBPF26B4DH59 902 aa27.11■■□□□ 1.93
PSEN1-225ENST00000560005 PRKAR2BP31323 418 aa27.11■■□□□ 1.93
PSEN1-225ENST00000560005 NBPF10Q6P3W6 841 aaKnown RBP27.11■■□□□ 1.93
PSEN1-225ENST00000560005 NBPF15Q8N660 670 aa27.11■■□□□ 1.93
PSEN1-225ENST00000560005 JDP2Q8WYK2 163 aa27.11■■□□□ 1.93
PSEN1-225ENST00000560005 GJA3Q9Y6H8 435 aa27.11■■□□□ 1.93
PSEN1-225ENST00000560005 SNED1Q8TER0 1413 aa27.1■■□□□ 1.93
PSEN1-225ENST00000560005 GTF2E1P29083 439 aaPredicted RBP27.1■■□□□ 1.93
PSEN1-225ENST00000560005 RGL2O15211 777 aa27.09■■□□□ 1.93
PSEN1-225ENST00000560005 PSMD1Q99460 953 aa27.09■■□□□ 1.93
PSEN1-225ENST00000560005 FMR1Q06787 632 aaKnown RBP eCLIP27.08■■□□□ 1.93
PSEN1-225ENST00000560005 HLFQ16534 295 aa27.08■■□□□ 1.93
PSEN1-225ENST00000560005 PAXIP1Q6ZW49 1069 aaPredicted RBP27.08■■□□□ 1.93
PSEN1-225ENST00000560005 RSPH6AQ9H0K4 717 aa27.08■■□□□ 1.93
PSEN1-225ENST00000560005 COL4A5P29400 1685 aa27.08■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms