RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 BRPF1P55201 1214 aaPredicted RBP13.39□□□□□ -0.27
LRRC28-204ENST00000558172 AIMP1Q12904 312 aaKnown RBP13.39□□□□□ -0.27
LRRC28-204ENST00000558172 USPL1Q5W0Q7 1092 aa13.39□□□□□ -0.27
LRRC28-204ENST00000558172 TTLL7Q6ZT98 887 aa13.39□□□□□ -0.27
LRRC28-204ENST00000558172 ANKRD13DQ6ZTN6 518 aa13.39□□□□□ -0.27
LRRC28-204ENST00000558172 MRPL50Q8N5N7 158 aaKnown RBP13.39□□□□□ -0.27
LRRC28-204ENST00000558172 SSH1Q8WYL5 1049 aa13.39□□□□□ -0.27
LRRC28-204ENST00000558172 PHAXQ9H814 394 aaKnown RBP13.39□□□□□ -0.27
LRRC28-204ENST00000558172 ANKRD36CQ5JPF3 1778 aa13.38□□□□□ -0.27
LRRC28-204ENST00000558172 ARFGEF2Q9Y6D5 1785 aa13.38□□□□□ -0.27
LRRC28-204ENST00000558172 CAMTA2O94983 1202 aa13.38□□□□□ -0.27
LRRC28-204ENST00000558172 GYS1P13807 737 aa13.38□□□□□ -0.27
LRRC28-204ENST00000558172 FLIIQ13045 1269 aa13.38□□□□□ -0.27
LRRC28-204ENST00000558172 PLBD2Q8NHP8 589 aa13.38□□□□□ -0.27
LRRC28-204ENST00000558172 PDGFDQ9GZP0 370 aaPredicted RBP13.38□□□□□ -0.27
LRRC28-204ENST00000558172 MTFR1LQ9H019 292 aa13.38□□□□□ -0.27
LRRC28-204ENST00000558172 SMC4Q9NTJ3 1288 aa13.38□□□□□ -0.27
LRRC28-204ENST00000558172 SRP68Q9UHB9 627 aaKnown RBP13.38□□□□□ -0.27
LRRC28-204ENST00000558172 HSP90AB3PQ58FF7 597 aa13.37□□□□□ -0.27
LRRC28-204ENST00000558172 GIGYF2Q6Y7W6 1299 aaKnown RBP13.37□□□□□ -0.27
LRRC28-204ENST00000558172 FKBP5Q13451 457 aaPredicted RBP13.36□□□□□ -0.27
LRRC28-204ENST00000558172 KSR2Q6VAB6 950 aa13.36□□□□□ -0.27
LRRC28-204ENST00000558172 G2E3Q7L622 706 aa13.36□□□□□ -0.27
LRRC28-204ENST00000558172 RIC3Q7Z5B4 369 aa13.36□□□□□ -0.27
LRRC28-204ENST00000558172 ZBTB3Q9H5J0 574 aa13.36□□□□□ -0.27
LRRC28-204ENST00000558172 BCL2L12Q9HB09 334 aa13.36□□□□□ -0.27
LRRC28-204ENST00000558172 PTPRCP08575 1304 aa13.36□□□□□ -0.27
LRRC28-204ENST00000558172 ZBTB7AO95365 584 aa13.35□□□□□ -0.27
LRRC28-204ENST00000558172 FKBP8Q14318 412 aa13.35□□□□□ -0.27
LRRC28-204ENST00000558172 KIF16BQ96L93 1317 aa13.35□□□□□ -0.27
LRRC28-204ENST00000558172 PI4KAP2A4QPH2 592 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 IPO8O15397 1037 aaKnown RBP13.34□□□□□ -0.27
LRRC28-204ENST00000558172 POLD1P28340 1107 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 TM4SF1P30408 202 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 HLFQ16534 295 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 PI4KAP1Q8N8J0 262 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 ARHGAP45Q92619 1136 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 SETDB2Q96T68 719 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 BCL2L13Q9BXK5 485 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 SPON1Q9HCB6 807 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 RCAN3Q9UKA8 241 aa13.34□□□□□ -0.27
LRRC28-204ENST00000558172 AFDNP55196 1824 aaKnown RBP13.34□□□□□ -0.27
LRRC28-204ENST00000558172 ATP10DQ9P241 1426 aa13.33□□□□□ -0.28
LRRC28-204ENST00000558172 NEXNQ0ZGT2 675 aa13.33□□□□□ -0.28
LRRC28-204ENST00000558172 TCIRG1Q13488 830 aa13.33□□□□□ -0.28
LRRC28-204ENST00000558172 METTL22Q9BUU2 404 aaPredicted RBP13.33□□□□□ -0.28
LRRC28-204ENST00000558172 NOB1Q9ULX3 412 aaKnown RBP13.33□□□□□ -0.28
LRRC28-204ENST00000558172 ATF5Q9Y2D1 282 aaPredicted RBP13.33□□□□□ -0.28
LRRC28-204ENST00000558172 MAP3K2Q9Y2U5 619 aa13.33□□□□□ -0.28
LRRC28-204ENST00000558172 BCAR3O75815 825 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 TRIM28Q13263 835 aaKnown RBP13.32□□□□□ -0.28
LRRC28-204ENST00000558172 NFIXQ14938 502 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 PARP10Q53GL7 1025 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 TBC1D9BQ66K14 1250 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 MSL1Q68DK7 614 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 ZNF34Q8IZ26 560 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 DNAAF4Q8WXU2 420 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 API5Q9BZZ5 524 aaKnown RBP13.32□□□□□ -0.28
LRRC28-204ENST00000558172 NIP7Q9Y221 180 aaKnown RBP eCLIP13.32□□□□□ -0.28
LRRC28-204ENST00000558172 PARP3Q9Y6F1 533 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 ADCY9O60503 1353 aa13.32□□□□□ -0.28
LRRC28-204ENST00000558172 MMP10P09238 476 aa13.31□□□□□ -0.28
LRRC28-204ENST00000558172 BICDL1Q6ZP65 573 aa13.31□□□□□ -0.28
LRRC28-204ENST00000558172 ISCA1Q9BUE6 129 aa13.31□□□□□ -0.28
LRRC28-204ENST00000558172 CARMIL3Q8ND23 1372 aa13.31□□□□□ -0.28
LRRC28-204ENST00000558172 NRXN2Q9P2S2 1712 aa13.3□□□□□ -0.28
LRRC28-204ENST00000558172 ZKSCAN2Q63HK3 967 aa13.3□□□□□ -0.28
LRRC28-204ENST00000558172 PPP1R42Q7Z4L9 355 aa13.3□□□□□ -0.28
LRRC28-204ENST00000558172 CCDC191Q8NCU4 936 aa13.3□□□□□ -0.28
LRRC28-204ENST00000558172 FRAT1Q92837 279 aaPredicted RBP13.3□□□□□ -0.28
LRRC28-204ENST00000558172 MYD88Q99836 296 aa13.3□□□□□ -0.28
LRRC28-204ENST00000558172 SGIP1Q9BQI5 828 aa13.3□□□□□ -0.28
LRRC28-204ENST00000558172 NYXQ9GZU5 481 aa13.3□□□□□ -0.28
LRRC28-204ENST00000558172 N4BP2Q86UW6 1770 aaPredicted RBP13.3□□□□□ -0.28
LRRC28-204ENST00000558172 POLRMTO00411 1230 aaKnown RBP13.29□□□□□ -0.28
LRRC28-204ENST00000558172 SERPINB2P05120 415 aa13.29□□□□□ -0.28
LRRC28-204ENST00000558172 GPTP24298 496 aa13.29□□□□□ -0.28
LRRC28-204ENST00000558172 PTGER2P43116 358 aa13.29□□□□□ -0.28
LRRC28-204ENST00000558172 ATF7IPQ6VMQ6 1270 aa13.29□□□□□ -0.28
LRRC28-204ENST00000558172 TPTE2Q6XPS3 522 aa13.29□□□□□ -0.28
LRRC28-204ENST00000558172 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.29□□□□□ -0.28
LRRC28-204ENST00000558172 LINS1Q8NG48 757 aa13.29□□□□□ -0.28
LRRC28-204ENST00000558172 RNF123Q5XPI4 1314 aa13.29□□□□□ -0.28
LRRC28-204ENST00000558172 IBTKQ9P2D0 1353 aaPredicted RBP13.29□□□□□ -0.28
LRRC28-204ENST00000558172 F6X3S4 739 aa13.28□□□□□ -0.28
LRRC28-204ENST00000558172 MS4A1P11836 297 aa13.28□□□□□ -0.28
LRRC28-204ENST00000558172 DDR1Q08345 913 aa13.28□□□□□ -0.28
LRRC28-204ENST00000558172 NLRP10Q86W26 655 aa13.28□□□□□ -0.28
LRRC28-204ENST00000558172 NBPF5PQ86XG9 351 aaPredicted RBP13.28□□□□□ -0.28
LRRC28-204ENST00000558172 PXDNLA1KZ92 1463 aa13.28□□□□□ -0.28
LRRC28-204ENST00000558172 LRP5O75197 1615 aa13.28□□□□□ -0.28
LRRC28-204ENST00000558172 KIF13BQ9NQT8 1826 aa13.27□□□□□ -0.28
LRRC28-204ENST00000558172 ATP5J2-PTCD1G3V325 749 aa13.27□□□□□ -0.29
LRRC28-204ENST00000558172 GTF2E1P29083 439 aaPredicted RBP13.27□□□□□ -0.29
LRRC28-204ENST00000558172 BEND3Q5T5X7 828 aa13.27□□□□□ -0.29
LRRC28-204ENST00000558172 SUSD4Q5VX71 490 aa13.27□□□□□ -0.29
LRRC28-204ENST00000558172 SLC4A10Q6U841 1118 aa13.27□□□□□ -0.29
LRRC28-204ENST00000558172 UTP14AQ9BVJ6 771 aaKnown RBP13.27□□□□□ -0.29
LRRC28-204ENST00000558172 SRCIN1Q9C0H9 1055 aa13.27□□□□□ -0.29
LRRC28-204ENST00000558172 CWC25Q9NXE8 425 aaPredicted RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms