RNA–Protein interactions for RNA: ENST00000557431.5

SLIRP-210, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-210ENST00000557431 BRIP1Q9BX63 1249 aa18.91■□□□□ 0.62
SLIRP-210ENST00000557431 TEX13AQ9BXU3 409 aaPredicted RBP18.91■□□□□ 0.62
SLIRP-210ENST00000557431 KDM3BQ7LBC6 1761 aa18.91■□□□□ 0.62
SLIRP-210ENST00000557431 SETDB2Q96T68 719 aa18.9■□□□□ 0.62
SLIRP-210ENST00000557431 POTEIP0CG38 1075 aa18.89■□□□□ 0.61
SLIRP-210ENST00000557431 POTEJP0CG39 1038 aa18.89■□□□□ 0.61
SLIRP-210ENST00000557431 ERFEQ4G0M1 354 aa18.89■□□□□ 0.61
SLIRP-210ENST00000557431 FAM177BA6PVY3 158 aa18.88■□□□□ 0.61
SLIRP-210ENST00000557431 SCN4AP35499 1836 aa18.88■□□□□ 0.61
SLIRP-210ENST00000557431 CAPN15O75808 1086 aa18.87■□□□□ 0.61
SLIRP-210ENST00000557431 U2AF1L5P0DN76 240 aaPredicted RBP18.87■□□□□ 0.61
SLIRP-210ENST00000557431 ST5P78524 1137 aa18.87■□□□□ 0.61
SLIRP-210ENST00000557431 U2AF1Q01081 240 aaKnown RBP eCLIP18.87■□□□□ 0.61
SLIRP-210ENST00000557431 PRPF40BQ6NWY9 871 aaKnown RBP18.87■□□□□ 0.61
SLIRP-210ENST00000557431 NPM2Q86SE8 214 aaKnown RBP18.87■□□□□ 0.61
SLIRP-210ENST00000557431 DDNO94850 711 aaPredicted RBP18.86■□□□□ 0.61
SLIRP-210ENST00000557431 OLFM4Q6UX06 510 aa18.86■□□□□ 0.61
SLIRP-210ENST00000557431 CFAP53Q96M91 514 aa18.86■□□□□ 0.61
SLIRP-210ENST00000557431 TAOK3Q9H2K8 898 aa18.86■□□□□ 0.61
SLIRP-210ENST00000557431 PCNTO95613 3336 aa18.85■□□□□ 0.61
SLIRP-210ENST00000557431 NBPF26B4DH59 902 aa18.85■□□□□ 0.61
SLIRP-210ENST00000557431 SRGNP10124 158 aa18.85■□□□□ 0.61
SLIRP-210ENST00000557431 PPP2R1AP30153 589 aa18.85■□□□□ 0.61
SLIRP-210ENST00000557431 DPY19L2Q6NUT2 758 aa18.85■□□□□ 0.61
SLIRP-210ENST00000557431 NBPF10Q6P3W6 841 aaKnown RBP18.85■□□□□ 0.61
SLIRP-210ENST00000557431 NBPF15Q8N660 670 aa18.85■□□□□ 0.61
SLIRP-210ENST00000557431 MIS18AQ9NYP9 233 aa18.85■□□□□ 0.61
SLIRP-210ENST00000557431 NBPF5PQ86XG9 351 aaPredicted RBP18.84■□□□□ 0.61
SLIRP-210ENST00000557431 CNKSR1Q969H4 720 aa18.84■□□□□ 0.61
SLIRP-210ENST00000557431 HSPA1AP0DMV8 641 aaKnown RBP18.83■□□□□ 0.6
SLIRP-210ENST00000557431 HSPA1BP0DMV9 641 aaKnown RBP18.83■□□□□ 0.6
SLIRP-210ENST00000557431 STYK1Q6J9G0 422 aa18.83■□□□□ 0.6
SLIRP-210ENST00000557431 RTF1Q92541 710 aaKnown RBP18.83■□□□□ 0.6
SLIRP-210ENST00000557431 MASTLQ96GX5 879 aa18.83■□□□□ 0.6
SLIRP-210ENST00000557431 LTBP3Q9NS15 1303 aa18.82■□□□□ 0.6
SLIRP-210ENST00000557431 SNRPA1P09661 255 aaKnown RBP18.82■□□□□ 0.6
SLIRP-210ENST00000557431 HLFQ16534 295 aa18.82■□□□□ 0.6
SLIRP-210ENST00000557431 PDZRN3Q9UPQ7 1066 aa18.82■□□□□ 0.6
SLIRP-210ENST00000557431 NIP7Q9Y221 180 aaKnown RBP eCLIP18.82■□□□□ 0.6
SLIRP-210ENST00000557431 NUDCQ9Y266 331 aa18.82■□□□□ 0.6
SLIRP-210ENST00000557431 NGEFQ8N5V2 710 aa18.81■□□□□ 0.6
SLIRP-210ENST00000557431 MKRN1Q9UHC7 482 aaKnown RBP18.8■□□□□ 0.6
SLIRP-210ENST00000557431 ZNF541Q9H0D2 1346 aa18.79■□□□□ 0.6
SLIRP-210ENST00000557431 SLC51AQ86UW1 340 aa18.79■□□□□ 0.6
SLIRP-210ENST00000557431 C7orf43Q8WVR3 580 aa18.79■□□□□ 0.6
SLIRP-210ENST00000557431 ZNF277Q9NRM2 450 aaPredicted RBP18.79■□□□□ 0.6
SLIRP-210ENST00000557431 LAMB2P55268 1798 aa18.78■□□□□ 0.6
SLIRP-210ENST00000557431 ADAMTSL1Q8N6G6 1762 aa18.78■□□□□ 0.6
SLIRP-210ENST00000557431 CCDC93Q567U6 631 aa18.78■□□□□ 0.6
SLIRP-210ENST00000557431 CHADLQ6NUI6 762 aa18.78■□□□□ 0.6
SLIRP-210ENST00000557431 TNS4Q8IZW8 715 aa18.78■□□□□ 0.6
SLIRP-210ENST00000557431 ZNF652Q9Y2D9 606 aa18.78■□□□□ 0.6
SLIRP-210ENST00000557431 ABCC12Q96J65 1359 aa18.78■□□□□ 0.6
SLIRP-210ENST00000557431 TAF1P21675 1872 aa18.77■□□□□ 0.6
SLIRP-210ENST00000557431 COL4A5P29400 1685 aa18.77■□□□□ 0.6
SLIRP-210ENST00000557431 CLEC4GQ6UXB4 293 aa18.77■□□□□ 0.6
SLIRP-210ENST00000557431 THUMPD2Q9BTF0 503 aaKnown RBP18.77■□□□□ 0.6
SLIRP-210ENST00000557431 LTBP1Q14766 1721 aa18.77■□□□□ 0.59
SLIRP-210ENST00000557431 NPR1P16066 1061 aa18.76■□□□□ 0.59
SLIRP-210ENST00000557431 NUTM1Q86Y26 1132 aa18.76■□□□□ 0.59
SLIRP-210ENST00000557431 ANKRD36CQ5JPF3 1778 aa18.76■□□□□ 0.59
SLIRP-210ENST00000557431 TAF7Q15545 349 aaPredicted RBP18.75■□□□□ 0.59
SLIRP-210ENST00000557431 EAPPQ56P03 285 aaPredicted RBP18.75■□□□□ 0.59
SLIRP-210ENST00000557431 SOGA3Q5TF21 947 aa18.75■□□□□ 0.59
SLIRP-210ENST00000557431 FKBP4Q02790 459 aaKnown RBP eCLIP18.74■□□□□ 0.59
SLIRP-210ENST00000557431 TPTE2Q6XPS3 522 aa18.74■□□□□ 0.59
SLIRP-210ENST00000557431 TTLL7Q6ZT98 887 aa18.74■□□□□ 0.59
SLIRP-210ENST00000557431 RRP7AQ9Y3A4 280 aaKnown RBP18.74■□□□□ 0.59
SLIRP-210ENST00000557431 GPTP24298 496 aa18.73■□□□□ 0.59
SLIRP-210ENST00000557431 TAF1DQ9H5J8 278 aaPredicted RBP18.73■□□□□ 0.59
SLIRP-210ENST00000557431 TRPM7Q96QT4 1865 aa18.73■□□□□ 0.59
SLIRP-210ENST00000557431 RNF123Q5XPI4 1314 aa18.73■□□□□ 0.59
SLIRP-210ENST00000557431 KLRG2A4D1S0 409 aaPredicted RBP18.72■□□□□ 0.59
SLIRP-210ENST00000557431 MYL6BP14649 208 aa18.72■□□□□ 0.59
SLIRP-210ENST00000557431 GTF2E1P29083 439 aaPredicted RBP18.72■□□□□ 0.59
SLIRP-210ENST00000557431 SYNE4Q8N205 404 aa18.72■□□□□ 0.59
SLIRP-210ENST00000557431 CREBZFQ9NS37 354 aa18.72■□□□□ 0.59
SLIRP-210ENST00000557431 SNED1Q8TER0 1413 aa18.72■□□□□ 0.59
SLIRP-210ENST00000557431 HTATSF1O43719 755 aaKnown RBP18.71■□□□□ 0.59
SLIRP-210ENST00000557431 L3MBTL3Q96JM7 780 aaPredicted RBP18.71■□□□□ 0.59
SLIRP-210ENST00000557431 ZBTB3Q9H5J0 574 aa18.71■□□□□ 0.59
SLIRP-210ENST00000557431 UBN2Q6ZU65 1347 aa18.71■□□□□ 0.59
SLIRP-210ENST00000557431 PASKQ96RG2 1323 aa18.71■□□□□ 0.59
SLIRP-210ENST00000557431 TCERG1O14776 1098 aaKnown RBP18.7■□□□□ 0.58
SLIRP-210ENST00000557431 IARSP41252 1262 aaKnown RBP18.7■□□□□ 0.58
SLIRP-210ENST00000557431 LDHDQ86WU2 507 aa18.7■□□□□ 0.58
SLIRP-210ENST00000557431 CLEC11AQ9Y240 323 aa18.7■□□□□ 0.58
SLIRP-210ENST00000557431 IQCA1LA6NCM1 817 aa18.69■□□□□ 0.58
SLIRP-210ENST00000557431 EIF4A1P60842 406 aaKnown RBP18.69■□□□□ 0.58
SLIRP-210ENST00000557431 MAP3K15Q6ZN16 1313 aa18.69■□□□□ 0.58
SLIRP-210ENST00000557431 CNTNAP1P78357 1384 aa18.68■□□□□ 0.58
SLIRP-210ENST00000557431 EPHX2P34913 555 aa18.68■□□□□ 0.58
SLIRP-210ENST00000557431 C3orf67Q6ZVT6 689 aa18.68■□□□□ 0.58
SLIRP-210ENST00000557431 PLEKHF1Q96S99 279 aa18.68■□□□□ 0.58
SLIRP-210ENST00000557431 HACL1Q9UJ83 578 aa18.68■□□□□ 0.58
SLIRP-210ENST00000557431 FOXN1O15353 648 aa18.67■□□□□ 0.58
SLIRP-210ENST00000557431 ITGBL1O95965 494 aaPredicted RBP18.67■□□□□ 0.58
SLIRP-210ENST00000557431 SUSD4Q5VX71 490 aa18.67■□□□□ 0.58
SLIRP-210ENST00000557431 MAP1SQ66K74 1059 aaPredicted RBP18.67■□□□□ 0.58
SLIRP-210ENST00000557431 RTKN2Q8IZC4 609 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms