RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 C22orf23Q9BZE7 217 aa15.54■□□□□ 0.08
SHMT2-229ENST00000557348 JCADQ9P266 1359 aa15.54■□□□□ 0.08
SHMT2-229ENST00000557348 BCL9O00512 1426 aa15.54■□□□□ 0.08
SHMT2-229ENST00000557348 SURF6O75683 361 aaKnown RBP15.53■□□□□ 0.08
SHMT2-229ENST00000557348 SEC24BO95487 1268 aa15.53■□□□□ 0.08
SHMT2-229ENST00000557348 STARD3NLO95772 234 aa15.53■□□□□ 0.08
SHMT2-229ENST00000557348 PDE1AP54750 535 aa15.53■□□□□ 0.08
SHMT2-229ENST00000557348 GCKRQ14397 625 aa15.53■□□□□ 0.08
SHMT2-229ENST00000557348 ILDR2Q71H61 639 aa15.53■□□□□ 0.08
SHMT2-229ENST00000557348 STAP2Q9UGK3 403 aa15.53■□□□□ 0.08
SHMT2-229ENST00000557348 TOGARAM1Q9Y4F4 1720 aa15.53■□□□□ 0.08
SHMT2-229ENST00000557348 MX1P20591 662 aa15.52■□□□□ 0.08
SHMT2-229ENST00000557348 MFAP1P55081 439 aaKnown RBP15.52■□□□□ 0.08
SHMT2-229ENST00000557348 CWF19L2Q2TBE0 894 aaKnown RBP15.52■□□□□ 0.08
SHMT2-229ENST00000557348 SPATA31A5Q5VU36 1347 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 SPATA31A7Q8IWB4 1347 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 SALL3Q9BXA9 1300 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 ADAMTS2O95450 1211 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 IGKV5-2P06315 115 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 GSPT1P15170 499 aaKnown RBP15.51■□□□□ 0.07
SHMT2-229ENST00000557348 RBM25P49756 843 aaKnown RBP15.51■□□□□ 0.07
SHMT2-229ENST00000557348 DDB1Q16531 1140 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 TBC1D9Q6ZT07 1266 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 MYD88Q99836 296 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 APBB1O00213 710 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 SMARCA5O60264 1052 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-229ENST00000557348 RHPN1Q8TCX5 695 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 PIGBQ92521 554 aa15.51■□□□□ 0.07
SHMT2-229ENST00000557348 SPATA31A6Q5VVP1 1343 aa15.5■□□□□ 0.07
SHMT2-229ENST00000557348 PTCD1O75127 700 aaKnown RBP15.5■□□□□ 0.07
SHMT2-229ENST00000557348 OS9Q13438 667 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-229ENST00000557348 GPATCH3Q96I76 525 aa15.49■□□□□ 0.07
SHMT2-229ENST00000557348 ARFGEF2Q9Y6D5 1785 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 C16orf71Q8IYS4 520 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-229ENST00000557348 CCDC191Q8NCU4 936 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 BRPF3Q9ULD4 1205 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 ISY1Q9ULR0 285 aaKnown RBP15.48■□□□□ 0.07
SHMT2-229ENST00000557348 TTC41PQ6P2S7 1318 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 NBPF26B4DH59 902 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 REC8O95072 547 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 SDSP20132 328 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 NBPF14Q5TI25 921 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 NBPF10Q6P3W6 841 aaKnown RBP15.48■□□□□ 0.07
SHMT2-229ENST00000557348 UNC5CLQ8IV45 518 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 CLASRPQ8N2M8 674 aaKnown RBP15.48■□□□□ 0.07
SHMT2-229ENST00000557348 NBPF15Q8N660 670 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 SUCLG2Q96I99 432 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 ATG3Q9NT62 314 aa15.48■□□□□ 0.07
SHMT2-229ENST00000557348 USP42Q9H9J4 1324 aaKnown RBP15.47■□□□□ 0.07
SHMT2-229ENST00000557348 NUTM2BA6NNL0 878 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-229ENST00000557348 NUTM2EB1AL46 878 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-229ENST00000557348 ERC2O15083 957 aa15.47■□□□□ 0.07
SHMT2-229ENST00000557348 KIF6Q6ZMV9 814 aa15.47■□□□□ 0.07
SHMT2-229ENST00000557348 NUTM2AQ8IVF1 878 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-229ENST00000557348 BICC1Q9H694 974 aaKnown RBP15.47■□□□□ 0.07
SHMT2-229ENST00000557348 CWC25Q9NXE8 425 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-229ENST00000557348 EPB41L2O43491 1005 aaKnown RBP15.46■□□□□ 0.07
SHMT2-229ENST00000557348 G3BP1Q13283 466 aaKnown RBP eCLIP15.46■□□□□ 0.072e-7■■■□□ 18
SHMT2-229ENST00000557348 RABL6Q3YEC7 729 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-229ENST00000557348 OTUD7AQ8TE49 926 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-229ENST00000557348 A1BGP04217 495 aa15.45■□□□□ 0.06
SHMT2-229ENST00000557348 TRIM28Q13263 835 aaKnown RBP15.45■□□□□ 0.06
SHMT2-229ENST00000557348 VPS72Q15906 364 aa15.45■□□□□ 0.06
SHMT2-229ENST00000557348 HSP90AB3PQ58FF7 597 aa15.45■□□□□ 0.06
SHMT2-229ENST00000557348 RTN4Q9NQC3 1192 aaKnown RBP15.45■□□□□ 0.06
SHMT2-229ENST00000557348 ASAP1Q9ULH1 1129 aa15.45■□□□□ 0.06
SHMT2-229ENST00000557348 ITGB4P16144 1822 aa15.45■□□□□ 0.06
SHMT2-229ENST00000557348 A0A087WZG4 1122 aa15.44■□□□□ 0.06
SHMT2-229ENST00000557348 RBM42Q9BTD8 480 aaKnown RBP15.44■□□□□ 0.06
SHMT2-229ENST00000557348 CCDC9Q9Y3X0 531 aaKnown RBP15.44■□□□□ 0.06
SHMT2-229ENST00000557348 NUP188Q5SRE5 1749 aa15.44■□□□□ 0.06
SHMT2-229ENST00000557348 SMARCC1Q92922 1105 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-229ENST00000557348 KAZALD1Q96I82 304 aa15.44■□□□□ 0.06
SHMT2-229ENST00000557348 COPRSQ9NQ92 184 aa15.44■□□□□ 0.06
SHMT2-229ENST00000557348 H7C1W4 665 aa15.43■□□□□ 0.06
SHMT2-229ENST00000557348 GLRX3O76003 335 aaKnown RBP15.43■□□□□ 0.06
SHMT2-229ENST00000557348 DNAJC10Q8IXB1 793 aa15.43■□□□□ 0.06
SHMT2-229ENST00000557348 CICQ96RK0 1608 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-229ENST00000557348 AFDNP55196 1824 aaKnown RBP15.42■□□□□ 0.06
SHMT2-229ENST00000557348 TTLL7Q6ZT98 887 aa15.42■□□□□ 0.06
SHMT2-229ENST00000557348 UBE3BQ7Z3V4 1068 aa15.42■□□□□ 0.06
SHMT2-229ENST00000557348 CNTROBQ8N137 903 aa15.42■□□□□ 0.06
SHMT2-229ENST00000557348 FNBP4Q8N3X1 1017 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-229ENST00000557348 IL1RAPL2Q9NP60 686 aa15.42■□□□□ 0.06
SHMT2-229ENST00000557348 DOT1LQ8TEK3 1739 aa15.42■□□□□ 0.06
SHMT2-229ENST00000557348 SOCS7O14512 581 aa15.41■□□□□ 0.06
SHMT2-229ENST00000557348 IFIT2P09913 472 aaKnown RBP15.41■□□□□ 0.06
SHMT2-229ENST00000557348 IL6STP40189 918 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-229ENST00000557348 PIP4K2AP48426 406 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-229ENST00000557348 PRIM1P49642 420 aaKnown RBP15.41■□□□□ 0.06
SHMT2-229ENST00000557348 TCIRG1Q13488 830 aa15.41■□□□□ 0.06
SHMT2-229ENST00000557348 MEX3CQ5U5Q3 659 aaKnown RBP15.41■□□□□ 0.06
SHMT2-229ENST00000557348 SNX21Q969T3 373 aa15.41■□□□□ 0.06
SHMT2-229ENST00000557348 SYTL4Q96C24 671 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-229ENST00000557348 NGLY1Q96IV0 654 aa15.41■□□□□ 0.06
SHMT2-229ENST00000557348 ISCA1Q9BUE6 129 aa15.41■□□□□ 0.06
SHMT2-229ENST00000557348 CYP19A1P11511 503 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-229ENST00000557348 CASP7P55210 303 aa15.41■□□□□ 0.06
SHMT2-229ENST00000557348 HSCBQ8IWL3 235 aa15.41■□□□□ 0.06
SHMT2-229ENST00000557348 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms