RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	NMI	Q13287	307 aa	Predicted RBP	5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	LRRFIP1	Q32MZ4	808 aa	Known RBP	5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	PPP1R42	Q7Z4L9	355 aa		5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	DCTPP1	Q9H773	170 aa		5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	MAP3K2	Q9Y2U5	619 aa		5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	MARCH6	O60337	910 aa		5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	MYD88	Q99836	296 aa		5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZNF521	Q96K83	1311 aa		5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	WDR7	Q9Y4E6	1490 aa		5.83	□□□□□ -1.48
SYNE2-223	ENST00000557005	QRICH2	Q9H0J4	1663 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	SFPQ	P23246	707 aa	Known RBP eCLIP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	CHML	P26374	656 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	DMTN	Q08495	405 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	TAF7	Q15545	349 aa	Predicted RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC144CP	Q8IYA2	1237 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZNF397	Q8NF99	534 aa	Predicted RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	PIBF1	Q8WXW3	757 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	ERVK-7	P63135	1459 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	CDC42BPB	Q9Y5S2	1711 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	EIF3J	O75822	258 aa	Known RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	SKIL	P12757	684 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	FILIP1L	Q4L180	1135 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	CPLX2	Q6PUV4	134 aa	Known RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	CPLX3	Q8WVH0	158 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	EVI5L	Q96CN4	794 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	BCL2L12	Q9HB09	334 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	DACT1	Q9NYF0	836 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	DACH1	Q9UI36	760 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	NSFL1C	Q9UNZ2	370 aa	Known RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	PLCH2	O75038	1416 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	ERLIN1	O75477	346 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	POLR3D	P05423	398 aa	Predicted RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	TOP1	P11387	765 aa	Known RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	RDX	P35241	583 aa	Known RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	SCAND2P	Q9GZW5	306 aa	Predicted RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZSWIM4	Q9H7M6	989 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZNF500	O60304	480 aa	Predicted RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	PLEKHO1	Q53GL0	409 aa	Predicted RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	HSP90AA4P	Q58FG1	418 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	FAM200A	Q8TCP9	573 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	NUP133	Q8WUM0	1156 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	MAGEC2	Q9UBF1	373 aa	Predicted RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	KIF1B	O60333	1816 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	MADD	Q8WXG6	1647 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	GLRX3	O76003	335 aa	Known RBP	5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005		Q6ZUG5	572 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	RUFY3	Q7L099	469 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	PLCD3	Q8N3E9	789 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	SNX14	Q9Y5W7	946 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	CLTCL1	P53675	1640 aa		5.82	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZFYVE9	O95405	1425 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	CLASP1	Q7Z460	1538 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZSCAN12	O43309	604 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	FOXO3	O43524	673 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	IPO7	O95373	1038 aa	Known RBP	5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZNF165	P49910	485 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC150	Q8NCX0	1101 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	SRRT	Q9BXP5	876 aa	Known RBP	5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	BRMS1	Q9HCU9	246 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	IQGAP3	Q86VI3	1631 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC158	Q5M9N0	1113 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	FBXO31	Q5XUX0	539 aa	Predicted RBP	5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	SYT10	Q6XYQ8	523 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	KRBA2	Q6ZNG9	492 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	TXLNB	Q8N3L3	684 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZNF692	Q9BU19	519 aa	Predicted RBP	5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZMYM3	Q14202	1370 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	DHX16	O60231	1041 aa	Known RBP	5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	BMS1	Q14692	1282 aa	Known RBP	5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZNF530	Q6P9A1	599 aa	Predicted RBP	5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	RAD21	O60216	631 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	NEMF	O60524	1076 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	ATP8B2	P98198	1209 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	KRT32	Q14532	448 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	ELF2	Q15723	593 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	G2E3	Q7L622	706 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	CBX8	Q9HC52	389 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	RAI14	Q9P0K7	980 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	PYCARD	Q9ULZ3	195 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	RBM8A	Q9Y5S9	174 aa	Known RBP	5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	TRPM2	O94759	1503 aa		5.81	□□□□□ -1.48
SYNE2-223	ENST00000557005	GSDMD	P57764	484 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	SYTL4	Q96C24	671 aa	Predicted RBP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CCDC85A	Q96PX6	553 aa	Predicted RBP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	PLEKHF1	Q96S99	279 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CHPF2	Q9P2E5	772 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	PA2G4	Q9UQ80	394 aa	Known RBP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	RAD50	Q92878	1312 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	CTAGE5	O15320	804 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	ZNF75D	P51815	510 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	ESCO1	Q5FWF5	840 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	RHPN1	Q8TCX5	695 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	DNAAF4	Q8WXU2	420 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	SPHKAP	Q2M3C7	1700 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	ATP7A	Q04656	1500 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	RTL1	A6NKG5	1358 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	PIK3R4	Q99570	1358 aa		5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	KIF2A	O00139	706 aa	Predicted RBP	5.8	□□□□□ -1.48
SYNE2-223	ENST00000557005	WASL	O00401	505 aa	Predicted RBP	5.8	□□□□□ -1.48

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