RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 VEGFAP15692 232 aaPredicted RBP24.46■■□□□ 1.51
VIPAS39-209ENST00000556909 PIP4K2AP48426 406 aaPredicted RBP24.46■■□□□ 1.51
VIPAS39-209ENST00000556909 MCM10Q7L590 875 aa24.46■■□□□ 1.51
VIPAS39-209ENST00000556909 ZNF219Q9P2Y4 722 aaPredicted RBP24.46■■□□□ 1.51
VIPAS39-209ENST00000556909 RTF1Q92541 710 aaKnown RBP24.45■■□□□ 1.5
VIPAS39-209ENST00000556909 PCNTO95613 3336 aa24.45■■□□□ 1.5
VIPAS39-209ENST00000556909 NPHP1O15259 732 aa24.44■■□□□ 1.5
VIPAS39-209ENST00000556909 ST5P78524 1137 aa24.44■■□□□ 1.5
VIPAS39-209ENST00000556909 SNRPA1P09661 255 aaKnown RBP24.43■■□□□ 1.5
VIPAS39-209ENST00000556909 JMYQ8N9B5 988 aa24.43■■□□□ 1.5
VIPAS39-209ENST00000556909 KDM3BQ7LBC6 1761 aa24.43■■□□□ 1.5
VIPAS39-209ENST00000556909 LTBP3Q9NS15 1303 aa24.42■■□□□ 1.5
VIPAS39-209ENST00000556909 SRGNP10124 158 aa24.42■■□□□ 1.5
VIPAS39-209ENST00000556909 STYK1Q6J9G0 422 aa24.42■■□□□ 1.5
VIPAS39-209ENST00000556909 CNKSR1Q969H4 720 aa24.42■■□□□ 1.5
VIPAS39-209ENST00000556909 POTECB2RU33 542 aa24.41■■□□□ 1.5
VIPAS39-209ENST00000556909 DCTN1Q14203 1278 aa24.41■■□□□ 1.5
VIPAS39-209ENST00000556909 ERFEQ4G0M1 354 aa24.41■■□□□ 1.5
VIPAS39-209ENST00000556909 PRPF40BQ6NWY9 871 aaKnown RBP24.41■■□□□ 1.5
VIPAS39-209ENST00000556909 TAOK3Q9H2K8 898 aa24.41■■□□□ 1.5
VIPAS39-209ENST00000556909 CLEC4GQ6UXB4 293 aa24.4■■□□□ 1.5
VIPAS39-209ENST00000556909 MASTLQ96GX5 879 aa24.4■■□□□ 1.5
VIPAS39-209ENST00000556909 ZNF652Q9Y2D9 606 aa24.39■■□□□ 1.49
VIPAS39-209ENST00000556909 NBPF26B4DH59 902 aa24.38■■□□□ 1.49
VIPAS39-209ENST00000556909 HTATSF1O43719 755 aaKnown RBP24.38■■□□□ 1.49
VIPAS39-209ENST00000556909 DPY19L2Q6NUT2 758 aa24.38■■□□□ 1.49
VIPAS39-209ENST00000556909 NBPF10Q6P3W6 841 aaKnown RBP24.38■■□□□ 1.49
VIPAS39-209ENST00000556909 NBPF5PQ86XG9 351 aaPredicted RBP24.38■■□□□ 1.49
VIPAS39-209ENST00000556909 NBPF15Q8N660 670 aa24.38■■□□□ 1.49
VIPAS39-209ENST00000556909 NUP98P52948 1817 aa24.36■■□□□ 1.49
VIPAS39-209ENST00000556909 SOGA3Q5TF21 947 aa24.36■■□□□ 1.49
VIPAS39-209ENST00000556909 RGL2O15211 777 aa24.35■■□□□ 1.49
VIPAS39-209ENST00000556909 SCN4AP35499 1836 aa24.34■■□□□ 1.49
VIPAS39-209ENST00000556909 TAF7Q15545 349 aaPredicted RBP24.34■■□□□ 1.49
VIPAS39-209ENST00000556909 NIP7Q9Y221 180 aaKnown RBP eCLIP24.34■■□□□ 1.49
VIPAS39-209ENST00000556909 C7orf43Q8WVR3 580 aa24.33■■□□□ 1.49
VIPAS39-209ENST00000556909 KLRG2A4D1S0 409 aaPredicted RBP24.32■■□□□ 1.48
VIPAS39-209ENST00000556909 NPR1P16066 1061 aa24.32■■□□□ 1.48
VIPAS39-209ENST00000556909 MIS18AQ9NYP9 233 aa24.32■■□□□ 1.48
VIPAS39-209ENST00000556909 CCDC93Q567U6 631 aa24.31■■□□□ 1.48
VIPAS39-209ENST00000556909 DDNO94850 711 aaPredicted RBP24.3■■□□□ 1.48
VIPAS39-209ENST00000556909 HLFQ16534 295 aa24.3■■□□□ 1.48
VIPAS39-209ENST00000556909 TPTE2Q6XPS3 522 aa24.3■■□□□ 1.48
VIPAS39-209ENST00000556909 FAM177BA6PVY3 158 aa24.29■■□□□ 1.48
VIPAS39-209ENST00000556909 NEFMP07197 916 aa24.27■■□□□ 1.48
VIPAS39-209ENST00000556909 POTEIP0CG38 1075 aa24.27■■□□□ 1.48
VIPAS39-209ENST00000556909 POTEJP0CG39 1038 aa24.27■■□□□ 1.48
VIPAS39-209ENST00000556909 COL13A1Q5TAT6 717 aaPredicted RBP24.27■■□□□ 1.48
VIPAS39-209ENST00000556909 FKBP4Q02790 459 aaKnown RBP eCLIP24.26■■□□□ 1.47
VIPAS39-209ENST00000556909 CHADLQ6NUI6 762 aa24.26■■□□□ 1.47
VIPAS39-209ENST00000556909 OLFM4Q6UX06 510 aa24.26■■□□□ 1.47
VIPAS39-209ENST00000556909 PNISRQ8TF01 805 aaKnown RBP24.26■■□□□ 1.47
VIPAS39-209ENST00000556909 PLEKHF1Q96S99 279 aa24.26■■□□□ 1.47
VIPAS39-209ENST00000556909 ABCC12Q96J65 1359 aa24.26■■□□□ 1.47
VIPAS39-209ENST00000556909 L3MBTL3Q96JM7 780 aaPredicted RBP24.24■■□□□ 1.47
VIPAS39-209ENST00000556909 ZNF277Q9NRM2 450 aaPredicted RBP24.24■■□□□ 1.47
VIPAS39-209ENST00000556909 SNED1Q8TER0 1413 aa24.24■■□□□ 1.47
VIPAS39-209ENST00000556909 IQCA1LA6NCM1 817 aa24.23■■□□□ 1.47
VIPAS39-209ENST00000556909 EIF4A1P60842 406 aaKnown RBP24.23■■□□□ 1.47
VIPAS39-209ENST00000556909 NFE2L2Q16236 605 aa24.23■■□□□ 1.47
VIPAS39-209ENST00000556909 NGEFQ8N5V2 710 aa24.23■■□□□ 1.47
VIPAS39-209ENST00000556909 THUMPD2Q9BTF0 503 aaKnown RBP24.23■■□□□ 1.47
VIPAS39-209ENST00000556909 MAP3K15Q6ZN16 1313 aa24.23■■□□□ 1.47
VIPAS39-209ENST00000556909 ZNF541Q9H0D2 1346 aa24.23■■□□□ 1.47
VIPAS39-209ENST00000556909 ADAMTSL1Q8N6G6 1762 aa24.23■■□□□ 1.47
VIPAS39-209ENST00000556909 ERVV-1B6SEH8 477 aa24.22■■□□□ 1.47
VIPAS39-209ENST00000556909 GTF2E1P29083 439 aaPredicted RBP24.22■■□□□ 1.47
VIPAS39-209ENST00000556909 RTKN2Q8IZC4 609 aa24.22■■□□□ 1.47
VIPAS39-209ENST00000556909 RIC1Q4ADV7 1423 aa24.21■■□□□ 1.47
VIPAS39-209ENST00000556909 HSPA1AP0DMV8 641 aaKnown RBP24.21■■□□□ 1.47
VIPAS39-209ENST00000556909 HSPA1BP0DMV9 641 aaKnown RBP24.21■■□□□ 1.47
VIPAS39-209ENST00000556909 ALDH1B1P30837 517 aa24.21■■□□□ 1.47
VIPAS39-209ENST00000556909 NUTM1Q86Y26 1132 aa24.21■■□□□ 1.47
VIPAS39-209ENST00000556909 NYXQ9GZU5 481 aa24.21■■□□□ 1.47
VIPAS39-209ENST00000556909 CREBZFQ9NS37 354 aa24.21■■□□□ 1.47
VIPAS39-209ENST00000556909 IBTKQ9P2D0 1353 aaPredicted RBP24.2■■□□□ 1.46
VIPAS39-209ENST00000556909 CRY2Q49AN0 593 aa24.2■■□□□ 1.46
VIPAS39-209ENST00000556909 KIF6Q6ZMV9 814 aa24.2■■□□□ 1.46
VIPAS39-209ENST00000556909 TTLL7Q6ZT98 887 aa24.2■■□□□ 1.46
VIPAS39-209ENST00000556909 TAF1DQ9H5J8 278 aaPredicted RBP24.2■■□□□ 1.46
VIPAS39-209ENST00000556909 RRP7AQ9Y3A4 280 aaKnown RBP24.2■■□□□ 1.46
VIPAS39-209ENST00000556909 UBN2Q6ZU65 1347 aa24.19■■□□□ 1.46
VIPAS39-209ENST00000556909 LDHDQ86WU2 507 aa24.19■■□□□ 1.46
VIPAS39-209ENST00000556909 MAPK8IP3Q9UPT6 1336 aa24.18■■□□□ 1.46
VIPAS39-209ENST00000556909 MYL6BP14649 208 aa24.18■■□□□ 1.46
VIPAS39-209ENST00000556909 IARSP41252 1262 aaKnown RBP24.18■■□□□ 1.46
VIPAS39-209ENST00000556909 COL4A5P29400 1685 aa24.18■■□□□ 1.46
VIPAS39-209ENST00000556909 PASKQ96RG2 1323 aa24.17■■□□□ 1.46
VIPAS39-209ENST00000556909 ANKRD36CQ5JPF3 1778 aa24.17■■□□□ 1.46
VIPAS39-209ENST00000556909 GPTP24298 496 aa24.17■■□□□ 1.46
VIPAS39-209ENST00000556909 SYNE4Q8N205 404 aa24.17■■□□□ 1.46
VIPAS39-209ENST00000556909 ZBTB3Q9H5J0 574 aa24.17■■□□□ 1.46
VIPAS39-209ENST00000556909 ERBB4Q15303 1308 aa24.15■■□□□ 1.46
VIPAS39-209ENST00000556909 FZD9O00144 591 aa24.15■■□□□ 1.46
VIPAS39-209ENST00000556909 PSMD1Q99460 953 aa24.15■■□□□ 1.46
VIPAS39-209ENST00000556909 PNNQ9H307 717 aaKnown RBP24.15■■□□□ 1.46
VIPAS39-209ENST00000556909 MKRN1Q9UHC7 482 aaKnown RBP24.15■■□□□ 1.46
VIPAS39-209ENST00000556909 HACL1Q9UJ83 578 aa24.15■■□□□ 1.46
VIPAS39-209ENST00000556909 EAPPQ56P03 285 aaPredicted RBP24.14■■□□□ 1.45
VIPAS39-209ENST00000556909 TNS4Q8IZW8 715 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms