RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 OS9Q13438 667 aaPredicted RBP12.41□□□□□ -0.42
TMEM260-211ENST00000556648 LARP1Q6PKG0 1096 aaKnown RBP12.41□□□□□ -0.42
TMEM260-211ENST00000556648 PAPPAQ13219 1627 aa12.41□□□□□ -0.42
TMEM260-211ENST00000556648 UTYO14607 1347 aa12.41□□□□□ -0.42
TMEM260-211ENST00000556648 TOGARAM1Q9Y4F4 1720 aa12.41□□□□□ -0.42
TMEM260-211ENST00000556648 UBR2Q8IWV8 1755 aa12.41□□□□□ -0.42
TMEM260-211ENST00000556648 NEURL1BA8MQ27 555 aa12.4□□□□□ -0.42
TMEM260-211ENST00000556648 ZCRB1Q8TBF4 217 aaKnown RBP12.4□□□□□ -0.42
TMEM260-211ENST00000556648 FMNL2Q96PY5 1086 aa12.4□□□□□ -0.42
TMEM260-211ENST00000556648 MCM4P33991 863 aa12.4□□□□□ -0.42
TMEM260-211ENST00000556648 EPHA10Q5JZY3 1008 aa12.4□□□□□ -0.42
TMEM260-211ENST00000556648 PALD1Q9ULE6 856 aa12.4□□□□□ -0.42
TMEM260-211ENST00000556648 KCPQ6ZWJ8 1503 aa12.4□□□□□ -0.42
TMEM260-211ENST00000556648 PCDH11XQ9BZA7 1347 aa12.4□□□□□ -0.43
TMEM260-211ENST00000556648 PCDH11YQ9BZA8 1340 aa12.4□□□□□ -0.43
TMEM260-211ENST00000556648 METTL22Q9BUU2 404 aaPredicted RBP12.39□□□□□ -0.43
TMEM260-211ENST00000556648 EIF5BO60841 1220 aaKnown RBP12.38□□□□□ -0.43
TMEM260-211ENST00000556648 GCKRQ14397 625 aa12.38□□□□□ -0.43
TMEM260-211ENST00000556648 KLHDC4Q8TBB5 520 aa12.38□□□□□ -0.43
TMEM260-211ENST00000556648 DDX54Q8TDD1 881 aaKnown RBP12.38□□□□□ -0.43
TMEM260-211ENST00000556648 NBPF26B4DH59 902 aa12.38□□□□□ -0.43
TMEM260-211ENST00000556648 HSP90AA1P07900 732 aaKnown RBP12.38□□□□□ -0.43
TMEM260-211ENST00000556648 IL2RBP14784 551 aa12.38□□□□□ -0.43
TMEM260-211ENST00000556648 NBPF14Q5TI25 921 aa12.38□□□□□ -0.43
TMEM260-211ENST00000556648 NBPF10Q6P3W6 841 aaKnown RBP12.38□□□□□ -0.43
TMEM260-211ENST00000556648 NBPF15Q8N660 670 aa12.38□□□□□ -0.43
TMEM260-211ENST00000556648 CARD10Q9BWT7 1032 aa12.38□□□□□ -0.43
TMEM260-211ENST00000556648 ANO2Q9NQ90 1003 aa12.38□□□□□ -0.43
TMEM260-211ENST00000556648 USP42Q9H9J4 1324 aaKnown RBP12.38□□□□□ -0.43
TMEM260-211ENST00000556648 HSP90AB4PQ58FF6 505 aa12.37□□□□□ -0.43
TMEM260-211ENST00000556648 ANKRD13DQ6ZTN6 518 aa12.37□□□□□ -0.43
TMEM260-211ENST00000556648 TNPO1Q92973 898 aaKnown RBP12.37□□□□□ -0.43
TMEM260-211ENST00000556648 NUP188Q5SRE5 1749 aa12.37□□□□□ -0.43
TMEM260-211ENST00000556648 ATP5J2-PTCD1G3V325 749 aa12.37□□□□□ -0.43
TMEM260-211ENST00000556648 PTCD1O75127 700 aaKnown RBP12.37□□□□□ -0.43
TMEM260-211ENST00000556648 SASH1O94885 1247 aa12.37□□□□□ -0.43
TMEM260-211ENST00000556648 NEXNQ0ZGT2 675 aa12.37□□□□□ -0.43
TMEM260-211ENST00000556648 RAB3GAP1Q15042 981 aa12.37□□□□□ -0.43
TMEM260-211ENST00000556648 SIL1Q9H173 461 aa12.37□□□□□ -0.43
TMEM260-211ENST00000556648 SSFA2P28290 1259 aa12.36□□□□□ -0.43
TMEM260-211ENST00000556648 TLR7Q9NYK1 1049 aaKnown RBP12.36□□□□□ -0.43
TMEM260-211ENST00000556648 CIZ1Q9ULV3 898 aaPredicted RBP12.36□□□□□ -0.43
TMEM260-211ENST00000556648 EVA1CP58658 441 aa12.35□□□□□ -0.43
TMEM260-211ENST00000556648 AACSQ86V21 672 aa12.35□□□□□ -0.43
TMEM260-211ENST00000556648 TJP1Q07157 1748 aa12.35□□□□□ -0.43
TMEM260-211ENST00000556648 NKX1-1Q15270 411 aaPredicted RBP12.35□□□□□ -0.43
TMEM260-211ENST00000556648 TTLL7Q6ZT98 887 aa12.35□□□□□ -0.43
TMEM260-211ENST00000556648 CLASRPQ8N2M8 674 aaKnown RBP12.35□□□□□ -0.43
TMEM260-211ENST00000556648 TNS2Q63HR2 1409 aa12.34□□□□□ -0.43
TMEM260-211ENST00000556648 TTC41PQ6P2S7 1318 aa12.34□□□□□ -0.43
TMEM260-211ENST00000556648 A1BGP04217 495 aa12.34□□□□□ -0.43
TMEM260-211ENST00000556648 UBE3BQ7Z3V4 1068 aa12.34□□□□□ -0.43
TMEM260-211ENST00000556648 ZGPATQ8N5A5 531 aaKnown RBP12.34□□□□□ -0.43
TMEM260-211ENST00000556648 EAF2Q96CJ1 260 aaPredicted RBP12.34□□□□□ -0.43
TMEM260-211ENST00000556648 CCDC8Q9H0W5 538 aaPredicted RBP12.34□□□□□ -0.43
TMEM260-211ENST00000556648 ERVV-2B6SEH9 535 aa12.33□□□□□ -0.43
TMEM260-211ENST00000556648 IFIT2P09913 472 aaKnown RBP12.33□□□□□ -0.43
TMEM260-211ENST00000556648 ERC1Q8IUD2 1116 aa12.33□□□□□ -0.43
TMEM260-211ENST00000556648 CNTROBQ8N137 903 aa12.33□□□□□ -0.43
TMEM260-211ENST00000556648 ECHDC1Q9NTX5 307 aa12.33□□□□□ -0.43
TMEM260-211ENST00000556648 HDAC5Q9UQL6 1122 aa12.33□□□□□ -0.43
TMEM260-211ENST00000556648 SGSM2O43147 1006 aa12.33□□□□□ -0.44
TMEM260-211ENST00000556648 ST18O60284 1047 aa12.33□□□□□ -0.44
TMEM260-211ENST00000556648 GLRX3O76003 335 aaKnown RBP12.33□□□□□ -0.44
TMEM260-211ENST00000556648 RFX5P48382 616 aaPredicted RBP12.33□□□□□ -0.44
TMEM260-211ENST00000556648 NEK4P51957 841 aa12.33□□□□□ -0.44
TMEM260-211ENST00000556648 CASP7P55210 303 aa12.33□□□□□ -0.44
TMEM260-211ENST00000556648 G3BP1Q13283 466 aaKnown RBP eCLIP12.33□□□□□ -0.44
TMEM260-211ENST00000556648 PKP1Q13835 747 aa12.33□□□□□ -0.44
TMEM260-211ENST00000556648 PLBD2Q8NHP8 589 aa12.33□□□□□ -0.44
TMEM260-211ENST00000556648 ROBO1Q9Y6N7 1651 aa12.33□□□□□ -0.44
TMEM260-211ENST00000556648 COL16A1Q07092 1604 aaPredicted RBP12.33□□□□□ -0.44
TMEM260-211ENST00000556648 CWC27Q6UX04 472 aaKnown RBP12.32□□□□□ -0.44
TMEM260-211ENST00000556648 NOL8Q76FK4 1167 aaKnown RBP12.32□□□□□ -0.44
TMEM260-211ENST00000556648 LSG1Q9H089 658 aaKnown RBP12.32□□□□□ -0.44
TMEM260-211ENST00000556648 BTG4Q9NY30 223 aa12.32□□□□□ -0.44
TMEM260-211ENST00000556648 A0A087WZG4 1122 aa12.32□□□□□ -0.44
TMEM260-211ENST00000556648 MCCP23508 829 aa12.32□□□□□ -0.44
TMEM260-211ENST00000556648 GZF1Q9H116 711 aaPredicted RBP12.32□□□□□ -0.44
TMEM260-211ENST00000556648 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.31□□□□□ -0.44
TMEM260-211ENST00000556648 RAD50Q92878 1312 aa12.31□□□□□ -0.44
TMEM260-211ENST00000556648 TRAK2O60296 914 aa12.31□□□□□ -0.44
TMEM260-211ENST00000556648 HSPA4P34932 840 aa12.31□□□□□ -0.44
TMEM260-211ENST00000556648 UPF3BQ9BZI7 483 aaKnown RBP12.31□□□□□ -0.44
TMEM260-211ENST00000556648 ZBTB3Q9H5J0 574 aa12.31□□□□□ -0.44
TMEM260-211ENST00000556648 ERBB4Q15303 1308 aa12.3□□□□□ -0.44
TMEM260-211ENST00000556648 ITGB4P16144 1822 aa12.3□□□□□ -0.44
TMEM260-211ENST00000556648 COL14A1Q05707 1796 aaKnown RBP12.3□□□□□ -0.44
TMEM260-211ENST00000556648 DDX11L8A8MPP1 907 aa12.3□□□□□ -0.44
TMEM260-211ENST00000556648 PTPN12Q05209 780 aaKnown RBP12.3□□□□□ -0.44
TMEM260-211ENST00000556648 RABL6Q3YEC7 729 aaPredicted RBP12.3□□□□□ -0.44
TMEM260-211ENST00000556648 IL17RAQ96F46 866 aa12.3□□□□□ -0.44
TMEM260-211ENST00000556648 GPATCH3Q96I76 525 aa12.3□□□□□ -0.44
TMEM260-211ENST00000556648 ASAP1Q9ULH1 1129 aa12.3□□□□□ -0.44
TMEM260-211ENST00000556648 DISP2A7MBM2 1401 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 ANAPC15P60006 121 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 PTH1RQ03431 593 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 TFCP2Q12800 502 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 TMX3Q96JJ7 454 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 BOLA2Q9H3K6 86 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms