RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 LMOD2Q6P5Q4 547 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 MPRIPQ6WCQ1 1025 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 MAP7D2Q96T17 732 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 STK31Q9BXU1 1019 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 UPF2Q9HAU5 1272 aaKnown RBP6.19□□□□□ -1.42
TMEM260-210ENST00000556422 GLI3P10071 1580 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 FKBP5Q13451 457 aaPredicted RBP6.19□□□□□ -1.42
TMEM260-210ENST00000556422 NFKBIBQ15653 356 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 ZNF530Q6P9A1 599 aaPredicted RBP6.19□□□□□ -1.42
TMEM260-210ENST00000556422 TBC1D9Q6ZT07 1266 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 KIF2CQ99661 725 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 GZF1Q9H116 711 aaPredicted RBP6.19□□□□□ -1.42
TMEM260-210ENST00000556422 MRVI1Q9Y6F6 885 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 TNS3Q68CZ2 1445 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 HDGFL1Q5TGJ6 251 aa6.18□□□□□ -1.42
TMEM260-210ENST00000556422 KDM6AO15550 1401 aaPredicted RBP6.18□□□□□ -1.42
TMEM260-210ENST00000556422 RNMTO43148 476 aaKnown RBP6.18□□□□□ -1.42
TMEM260-210ENST00000556422 ZC3H6P61129 1189 aaKnown RBP6.18□□□□□ -1.42
TMEM260-210ENST00000556422 PARP4Q9UKK3 1724 aaKnown RBP6.18□□□□□ -1.42
TMEM260-210ENST00000556422 SALL3Q9BXA9 1300 aa6.18□□□□□ -1.42
TMEM260-210ENST00000556422 PNMA6EA0A0J9YXQ4 647 aa6.18□□□□□ -1.42
TMEM260-210ENST00000556422 SOCS7O14512 581 aa6.18□□□□□ -1.42
TMEM260-210ENST00000556422 HOXB7P09629 217 aa6.18□□□□□ -1.42
TMEM260-210ENST00000556422 AMOTQ4VCS5 1084 aa6.18□□□□□ -1.42
TMEM260-210ENST00000556422 CREBRFQ8IUR6 639 aa6.18□□□□□ -1.42
TMEM260-210ENST00000556422 USP44Q9H0E7 712 aa6.18□□□□□ -1.42
TMEM260-210ENST00000556422 SHANK3Q9BYB0 1731 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 AK9Q5TCS8 1911 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 PLEKHO1Q53GL0 409 aaPredicted RBP6.17□□□□□ -1.42
TMEM260-210ENST00000556422 TTC22Q5TAA0 569 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 CHPF2Q9P2E5 772 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 ADCY9O60503 1353 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 ATF3P18847 181 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 CABLES1Q8TDN4 633 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 MRC1P22897 1456 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 PRAMEF22A3QJZ6 481 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 BTBD11A6QL63 1104 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 TPM2P07951 284 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 TNNT3P45378 269 aaPredicted RBP6.17□□□□□ -1.42
TMEM260-210ENST00000556422 GORABQ5T7V8 394 aa6.17□□□□□ -1.42
TMEM260-210ENST00000556422 TMX4Q9H1E5 349 aaPredicted RBP6.17□□□□□ -1.42
TMEM260-210ENST00000556422 IRF6O14896 467 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 DHX16O60231 1041 aaKnown RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 ANXA1P04083 346 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 GNAI2P04899 355 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 MAP2K1Q02750 393 aaPredicted RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 SLKQ9H2G2 1235 aaPredicted RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 RBM27Q9P2N5 1060 aaKnown RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 RIPOR2Q9Y4F9 1068 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 NPHP3Q7Z494 1330 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 FRAT2O75474 233 aaPredicted RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 TEFQ10587 303 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 BECN1Q14457 450 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 APBB1IPQ7Z5R6 666 aaPredicted RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 CCDC97Q96F63 343 aaPredicted RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 EXOC6BQ9Y2D4 811 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 LRRFIP2Q9Y608 721 aaKnown RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 SPATA31A3Q5VYP0 1347 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 IBTKQ9P2D0 1353 aaPredicted RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 GIGYF1O75420 1035 aaPredicted RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 EIF2S2P20042 333 aaKnown RBP6.16□□□□□ -1.42
TMEM260-210ENST00000556422 PROSER3Q2NL68 480 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 NBPF9Q3BBW0 867 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 CADPS2Q86UW7 1296 aa6.16□□□□□ -1.42
TMEM260-210ENST00000556422 LAMB4A4D0S4 1761 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 UBR2Q8IWV8 1755 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 CPDO75976 1380 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 CD2BP2O95400 341 aaKnown RBP6.15□□□□□ -1.42
TMEM260-210ENST00000556422 BEND3Q5T5X7 828 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 OSBPL3Q9H4L5 887 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 CDC45O75419 566 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 GNAI3P08754 354 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 NBPF7P0C2Y1 421 aaPredicted RBP6.15□□□□□ -1.42
TMEM260-210ENST00000556422 SDSP20132 328 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 FOSBP53539 338 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 ATP8B2P98198 1209 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 C1orf141Q5JVX7 400 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 BRINP3Q76B58 766 aa6.15□□□□□ -1.42
TMEM260-210ENST00000556422 CGNQ9P2M7 1197 aaKnown RBP6.15□□□□□ -1.42
TMEM260-210ENST00000556422 NHSL1Q5SYE7 1610 aa6.15□□□□□ -1.43
TMEM260-210ENST00000556422 PI4KAP2A4QPH2 592 aa6.15□□□□□ -1.43
TMEM260-210ENST00000556422 MPHOSPH10O00566 681 aaKnown RBP6.15□□□□□ -1.43
TMEM260-210ENST00000556422 HMMRO75330 724 aa6.15□□□□□ -1.43
TMEM260-210ENST00000556422 EP400NLQ6ZTU2 488 aa6.15□□□□□ -1.43
TMEM260-210ENST00000556422 OTUD6BQ8N6M0 293 aa6.15□□□□□ -1.43
TMEM260-210ENST00000556422 PI4KAP1Q8N8J0 262 aa6.15□□□□□ -1.43
TMEM260-210ENST00000556422 UBAP1LF5GYI3 381 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 KIF20AO95235 890 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 DDIT3P35638 169 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 CHRNA2Q15822 529 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 ARFGEF2Q9Y6D5 1785 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 PAPPAQ13219 1627 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 PLEKHG2Q9H7P9 1386 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 AFDNP55196 1824 aaKnown RBP6.14□□□□□ -1.43
TMEM260-210ENST00000556422 PHKG2P15735 406 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 PDE1AP54750 535 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 PDIA6Q15084 440 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 TSHZ3Q63HK5 1081 aa6.14□□□□□ -1.43
TMEM260-210ENST00000556422 NBPF5PQ86XG9 351 aaPredicted RBP6.14□□□□□ -1.43
TMEM260-210ENST00000556422 SSH3Q8TE77 659 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms