RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 TSPAN10Q9H1Z9 355 aaPredicted RBP9.23□□□□□ -0.93
SCFD1-217ENST00000555953 AVENQ9NQS1 362 aaPredicted RBP9.23□□□□□ -0.93
SCFD1-217ENST00000555953 ZNF468Q5VIY5 522 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-217ENST00000555953 PROSER2Q86WR7 435 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-217ENST00000555953 LARGE2Q8N3Y3 721 aa9.22□□□□□ -0.93
SCFD1-217ENST00000555953 GLMNQ92990 594 aa9.22□□□□□ -0.93
SCFD1-217ENST00000555953 MARK1Q9P0L2 795 aa9.22□□□□□ -0.93
SCFD1-217ENST00000555953 PALM3A6NDB9 673 aaPredicted RBP9.21□□□□□ -0.94
SCFD1-217ENST00000555953 DKK1O94907 266 aa9.21□□□□□ -0.94
SCFD1-217ENST00000555953 PSMA6P60900 246 aaKnown RBP9.21□□□□□ -0.94
SCFD1-217ENST00000555953 LAMC2Q13753 1193 aa9.21□□□□□ -0.94
SCFD1-217ENST00000555953 GRIN2CQ14957 1233 aa9.21□□□□□ -0.94
SCFD1-217ENST00000555953 TMEM132AQ24JP5 1023 aa9.21□□□□□ -0.94
SCFD1-217ENST00000555953 CHSY3Q70JA7 882 aa9.21□□□□□ -0.94
SCFD1-217ENST00000555953 SIX5Q8N196 739 aa9.21□□□□□ -0.94
SCFD1-217ENST00000555953 ZNF594Q96JF6 807 aaPredicted RBP9.21□□□□□ -0.94
SCFD1-217ENST00000555953 PRR12Q9ULL5 1215 aa9.21□□□□□ -0.94
SCFD1-217ENST00000555953 SFI1A8K8P3 1242 aa9.2□□□□□ -0.94
SCFD1-217ENST00000555953 GNB5O14775 395 aa9.2□□□□□ -0.94
SCFD1-217ENST00000555953 POTEAQ6S8J7 498 aa9.2□□□□□ -0.94
SCFD1-217ENST00000555953 TSEN2Q8NCE0 465 aaKnown RBP9.2□□□□□ -0.94
SCFD1-217ENST00000555953 RHPN1Q8TCX5 695 aa9.2□□□□□ -0.94
SCFD1-217ENST00000555953 GPC6Q9Y625 555 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-217ENST00000555953 M0R2N6 131 aa9.19□□□□□ -0.94
SCFD1-217ENST00000555953 ALYREFQ86V81 257 aaKnown RBP9.19□□□□□ -0.94
SCFD1-217ENST00000555953 TFIP11Q9UBB9 837 aaKnown RBP9.19□□□□□ -0.94
SCFD1-217ENST00000555953 HIRAP54198 1017 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-217ENST00000555953 NEUROD4Q9HD90 331 aa9.18□□□□□ -0.94
SCFD1-217ENST00000555953 HCN4Q9Y3Q4 1203 aa9.18□□□□□ -0.94
SCFD1-217ENST00000555953 MAFBQ9Y5Q3 323 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-217ENST00000555953 C21orf2O43822 256 aa9.17□□□□□ -0.94
SCFD1-217ENST00000555953 SFSWAPQ12872 951 aaKnown RBP9.17□□□□□ -0.94
SCFD1-217ENST00000555953 C1orf53Q5VUE5 145 aa9.17□□□□□ -0.94
SCFD1-217ENST00000555953 PHACTR1Q9C0D0 580 aa9.17□□□□□ -0.94
SCFD1-217ENST00000555953 PIK3R2O00459 728 aa9.16□□□□□ -0.94
SCFD1-217ENST00000555953 RASA1P20936 1047 aa9.16□□□□□ -0.94
SCFD1-217ENST00000555953 SYT9Q86SS6 491 aa9.16□□□□□ -0.94
SCFD1-217ENST00000555953 HSH2DQ96JZ2 352 aa9.16□□□□□ -0.94
SCFD1-217ENST00000555953 MDFIQ99750 246 aa9.16□□□□□ -0.94
SCFD1-217ENST00000555953 PPP1R12BO60237 982 aaPredicted RBP9.15□□□□□ -0.94
SCFD1-217ENST00000555953 SLC30A3Q99726 388 aa9.15□□□□□ -0.94
SCFD1-217ENST00000555953 CHMP3Q9Y3E7 222 aa9.15□□□□□ -0.94
SCFD1-217ENST00000555953 ELOA3CA0A087WX78 387 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-217ENST00000555953 ELOA3DA6NLF2 546 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-217ENST00000555953 ELOA3BQ3SY89 546 aa9.14□□□□□ -0.95
SCFD1-217ENST00000555953 ZNF280CQ8ND82 737 aa9.14□□□□□ -0.95
SCFD1-217ENST00000555953 ELOA3Q8NG57 546 aa9.14□□□□□ -0.95
SCFD1-217ENST00000555953 RBM19Q9Y4C8 960 aaKnown RBP9.14□□□□□ -0.95
SCFD1-217ENST00000555953 TRIM11Q96F44 468 aa9.13□□□□□ -0.95
SCFD1-217ENST00000555953 SUSD3Q96L08 255 aa9.13□□□□□ -0.95
SCFD1-217ENST00000555953 NOP53Q9NZM5 478 aaKnown RBP9.13□□□□□ -0.95
SCFD1-217ENST00000555953 ADAM23O75077 832 aa9.12□□□□□ -0.95
SCFD1-217ENST00000555953 SIN3BO75182 1162 aa9.12□□□□□ -0.95
SCFD1-217ENST00000555953 SEC13P55735 322 aa9.12□□□□□ -0.95
SCFD1-217ENST00000555953 SPEM2Q0P670 501 aa9.12□□□□□ -0.95
SCFD1-217ENST00000555953 CRTC2Q53ET0 693 aaPredicted RBP9.12□□□□□ -0.95
SCFD1-217ENST00000555953 SCG3Q8WXD2 468 aaKnown RBP9.12□□□□□ -0.95
SCFD1-217ENST00000555953 CEP63Q96MT8 703 aa9.12□□□□□ -0.95
SCFD1-217ENST00000555953 PPP1R12CQ9BZL4 782 aa9.12□□□□□ -0.95
SCFD1-217ENST00000555953 BRD7Q9NPI1 651 aa9.12□□□□□ -0.95
SCFD1-217ENST00000555953 ATAD2Q6PL18 1390 aa9.12□□□□□ -0.95
SCFD1-217ENST00000555953 A6NJR5 290 aa9.11□□□□□ -0.95
SCFD1-217ENST00000555953 C1QTNF9BB2RNN3 333 aa9.11□□□□□ -0.95
SCFD1-217ENST00000555953 BAG6P46379 1132 aa9.11□□□□□ -0.95
SCFD1-217ENST00000555953 TYRO3Q06418 890 aa9.11□□□□□ -0.95
SCFD1-217ENST00000555953 RAB44Q7Z6P3 723 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-217ENST00000555953 CD163Q86VB7 1156 aa9.11□□□□□ -0.95
SCFD1-217ENST00000555953 ALDH16A1Q8IZ83 802 aa9.11□□□□□ -0.95
SCFD1-217ENST00000555953 CALR3Q96L12 384 aaKnown RBP9.11□□□□□ -0.95
SCFD1-217ENST00000555953 C2orf49Q9BVC5 232 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-217ENST00000555953 ANKIB1Q9P2G1 1089 aa9.11□□□□□ -0.95
SCFD1-217ENST00000555953 ADARB2-AS1A8MUL3 147 aa9.1□□□□□ -0.95
SCFD1-217ENST00000555953 ALAS2P22557 587 aa9.1□□□□□ -0.95
SCFD1-217ENST00000555953 KCNQ4P56696 695 aa9.1□□□□□ -0.95
SCFD1-217ENST00000555953 KANK4Q5T7N3 995 aaPredicted RBP9.1□□□□□ -0.95
SCFD1-217ENST00000555953 LARP1Q6PKG0 1096 aaKnown RBP9.1□□□□□ -0.95
SCFD1-217ENST00000555953 STAG2Q8N3U4 1231 aa9.1□□□□□ -0.95
SCFD1-217ENST00000555953 LGR5O75473 907 aa9.09□□□□□ -0.95
SCFD1-217ENST00000555953 CHRNA4P43681 627 aa9.09□□□□□ -0.95
SCFD1-217ENST00000555953 PTK7Q13308 1070 aa9.09□□□□□ -0.95
SCFD1-217ENST00000555953 CHMP7Q8WUX9 453 aaPredicted RBP9.09□□□□□ -0.95
SCFD1-217ENST00000555953 TNFRSF25Q93038 417 aa9.09□□□□□ -0.95
SCFD1-217ENST00000555953 PLVAPQ9BX97 442 aa9.09□□□□□ -0.95
SCFD1-217ENST00000555953 DPYDQ12882 1025 aa9.08□□□□□ -0.96
SCFD1-217ENST00000555953 GAS2L2Q8NHY3 880 aa9.08□□□□□ -0.96
SCFD1-217ENST00000555953 NGLY1Q96IV0 654 aa9.08□□□□□ -0.96
SCFD1-217ENST00000555953 KCNH4Q9UQ05 1017 aa9.08□□□□□ -0.96
SCFD1-217ENST00000555953 STARD13Q9Y3M8 1113 aa9.08□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L15C9J2P7 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L10C9JJH3 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L13C9JLJ4 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L12C9JPN9 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L11C9JVI0 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L21D6R901 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L18D6R9N7 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L22D6RA61 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L17D6RBQ6 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L19D6RCP7 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 USP17L20D6RJB6 530 aa9.06□□□□□ -0.96
SCFD1-217ENST00000555953 ADH7P40394 386 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms