RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 HLTFQ14527 1009 aaKnown RBP eCLIP20.2■□□□□ 0.82
SYNE3-204ENST00000555759 CCDC178Q5BJE1 867 aa20.2■□□□□ 0.82
SYNE3-204ENST00000555759 C10orf67Q8IYJ2 551 aa20.2■□□□□ 0.82
SYNE3-204ENST00000555759 CTAGE1Q96RT6 745 aa20.2■□□□□ 0.82
SYNE3-204ENST00000555759 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.2■□□□□ 0.82
SYNE3-204ENST00000555759 MAATS1Q7Z4T9 603 aa20.2■□□□□ 0.82
SYNE3-204ENST00000555759 DACT1Q9NYF0 836 aa20.2■□□□□ 0.82
SYNE3-204ENST00000555759 TSG101Q99816 390 aa20.19■□□□□ 0.82
SYNE3-204ENST00000555759 RBSNQ9H1K0 784 aa20.19■□□□□ 0.82
SYNE3-204ENST00000555759 TAOK3Q9H2K8 898 aa20.19■□□□□ 0.82
SYNE3-204ENST00000555759 CETN2P41208 172 aa20.19■□□□□ 0.82
SYNE3-204ENST00000555759 ECHDC1Q9NTX5 307 aa20.19■□□□□ 0.82
SYNE3-204ENST00000555759 NLRP2Q9NX02 1062 aa20.19■□□□□ 0.82
SYNE3-204ENST00000555759 ZHX3Q9H4I2 956 aa20.19■□□□□ 0.82
SYNE3-204ENST00000555759 RALGAPBQ86X10 1494 aa20.18■□□□□ 0.82
SYNE3-204ENST00000555759 PARD3Q8TEW0 1356 aa20.18■□□□□ 0.82
SYNE3-204ENST00000555759 IGSF3O75054 1194 aa20.18■□□□□ 0.82
SYNE3-204ENST00000555759 ZFP91Q96JP5 570 aaPredicted RBP20.18■□□□□ 0.82
SYNE3-204ENST00000555759 DNAJC25Q9H1X3 360 aa20.18■□□□□ 0.82
SYNE3-204ENST00000555759 SEPT11Q9NVA2 429 aaKnown RBP20.18■□□□□ 0.82
SYNE3-204ENST00000555759 PCF11O94913 1555 aaKnown RBP20.18■□□□□ 0.82
SYNE3-204ENST00000555759 SYT1P21579 422 aa20.18■□□□□ 0.82
SYNE3-204ENST00000555759 GUCY1B3Q02153 619 aa20.18■□□□□ 0.82
SYNE3-204ENST00000555759 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.18■□□□□ 0.82
SYNE3-204ENST00000555759 TDO2P48775 406 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 KCNG4Q8TDN1 519 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 ESYT1Q9BSJ8 1104 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 RTEL1-TNFRSF6BF6WH68 1400 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 VPS18Q9P253 973 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 SPG7Q9UQ90 795 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 NPHP3Q7Z494 1330 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 LIG1P18858 919 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 THUMPD2Q9BTF0 503 aaKnown RBP20.17■□□□□ 0.82
SYNE3-204ENST00000555759 BOLA2Q9H3K6 86 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 JADE2Q9NQC1 790 aa20.17■□□□□ 0.82
SYNE3-204ENST00000555759 OTUD6BQ8N6M0 293 aa20.16■□□□□ 0.82
SYNE3-204ENST00000555759 GOLIM4O00461 696 aa20.16■□□□□ 0.82
SYNE3-204ENST00000555759 PPP1R12BO60237 982 aaPredicted RBP20.16■□□□□ 0.82
SYNE3-204ENST00000555759 FAM114A1Q8IWE2 563 aa20.16■□□□□ 0.82
SYNE3-204ENST00000555759 MRPS27Q92552 414 aaKnown RBP20.16■□□□□ 0.82
SYNE3-204ENST00000555759 CTAGE9A4FU28 777 aa20.16■□□□□ 0.82
SYNE3-204ENST00000555759 HDXQ7Z353 690 aa20.16■□□□□ 0.82
SYNE3-204ENST00000555759 CTCFLQ8NI51 663 aaPredicted RBP20.16■□□□□ 0.82
SYNE3-204ENST00000555759 GNAT3A8MTJ3 354 aa20.15■□□□□ 0.82
SYNE3-204ENST00000555759 NSRP1Q9H0G5 558 aaKnown RBP20.15■□□□□ 0.82
SYNE3-204ENST00000555759 ZNF530Q6P9A1 599 aaPredicted RBP20.15■□□□□ 0.82
SYNE3-204ENST00000555759 DDX54Q8TDD1 881 aaKnown RBP20.15■□□□□ 0.82
SYNE3-204ENST00000555759 RIOK3O14730 519 aaKnown RBP20.15■□□□□ 0.82
SYNE3-204ENST00000555759 SPAG1Q07617 926 aa20.15■□□□□ 0.82
SYNE3-204ENST00000555759 NEK1Q96PY6 1258 aa20.15■□□□□ 0.82
SYNE3-204ENST00000555759 GOPCQ9HD26 462 aa20.15■□□□□ 0.82
SYNE3-204ENST00000555759 ZNF500O60304 480 aaPredicted RBP20.15■□□□□ 0.82
SYNE3-204ENST00000555759 AOPEPQ8N6M6 819 aa20.15■□□□□ 0.82
SYNE3-204ENST00000555759 ABTB2Q8N961 1025 aa20.15■□□□□ 0.82
SYNE3-204ENST00000555759 PRG4Q92954 1404 aaPredicted RBP20.14■□□□□ 0.82
SYNE3-204ENST00000555759 GBP6Q6ZN66 633 aa20.14■□□□□ 0.82
SYNE3-204ENST00000555759 KRBA2Q6ZNG9 492 aa20.14■□□□□ 0.82
SYNE3-204ENST00000555759 RNF123Q5XPI4 1314 aa20.14■□□□□ 0.82
SYNE3-204ENST00000555759 SEC24BO95487 1268 aa20.14■□□□□ 0.81
SYNE3-204ENST00000555759 CYLC1P35663 651 aaPredicted RBP20.14■□□□□ 0.81
SYNE3-204ENST00000555759 CCDC121Q6ZUS5 278 aa20.14■□□□□ 0.81
SYNE3-204ENST00000555759 RBM42Q9BTD8 480 aaKnown RBP20.14■□□□□ 0.81
SYNE3-204ENST00000555759 GOLGA8BA8MQT2 603 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 SYKP43405 635 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 LARP6Q9BRS8 491 aaKnown RBP20.13■□□□□ 0.81
SYNE3-204ENST00000555759 FBXO3Q9UK99 471 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 AKAP2Q9Y2D5 859 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 DNM1Q05193 864 aaKnown RBP20.13■□□□□ 0.81
SYNE3-204ENST00000555759 TDRD12Q587J7 1177 aaKnown RBP20.13■□□□□ 0.81
SYNE3-204ENST00000555759 MSL1Q68DK7 614 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 AIDAQ96BJ3 306 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 SCAF11Q99590 1463 aaKnown RBP20.13■□□□□ 0.81
SYNE3-204ENST00000555759 SSRP1Q08945 709 aaKnown RBP20.13■□□□□ 0.81
SYNE3-204ENST00000555759 KDM2BQ8NHM5 1336 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 SLC52A1Q9NWF4 448 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 EPRSP07814 1512 aaKnown RBP20.13■□□□□ 0.81
SYNE3-204ENST00000555759 PDE1AP54750 535 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 SYT10Q6XYQ8 523 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 ARFGAP2Q8N6H7 521 aa20.13■□□□□ 0.81
SYNE3-204ENST00000555759 SSBP05455 408 aaKnown RBP eCLIP20.12■□□□□ 0.81
SYNE3-204ENST00000555759 U2AF2P26368 475 aaKnown RBP eCLIP20.12■□□□□ 0.816e-7■■■■□ 24.5
SYNE3-204ENST00000555759 AFAP1Q8N556 730 aa20.12■□□□□ 0.81
SYNE3-204ENST00000555759 ANKRD44Q8N8A2 993 aa20.12■□□□□ 0.81
SYNE3-204ENST00000555759 ABCC5O15440 1437 aa20.12■□□□□ 0.81
SYNE3-204ENST00000555759 BTBD11A6QL63 1104 aa20.12■□□□□ 0.81
SYNE3-204ENST00000555759 N4BP3O15049 544 aa20.12■□□□□ 0.81
SYNE3-204ENST00000555759 IKQ13123 557 aaPredicted RBP20.12■□□□□ 0.81
SYNE3-204ENST00000555759 PPP1R9BQ96SB3 815 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 TUBB2AQ13885 445 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 IFI16Q16666 785 aaKnown RBP20.11■□□□□ 0.81
SYNE3-204ENST00000555759 ATRIPQ8WXE1 791 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 TUBB2BQ9BVA1 445 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 MTIF2P46199 727 aaKnown RBP20.11■□□□□ 0.81
SYNE3-204ENST00000555759 CCT2P78371 535 aaKnown RBP20.11■□□□□ 0.81
SYNE3-204ENST00000555759 ANKS4BQ8N8V4 417 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 GTF3C6Q969F1 213 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 A6NNZ2 444 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 TUBB8Q3ZCM7 444 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 NUTM2GQ5VZR2 741 aa20.11■□□□□ 0.81
SYNE3-204ENST00000555759 GRIN2BQ13224 1484 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms