RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 PLEKHO1Q53GL0 409 aaPredicted RBP23.33■■□□□ 1.33
NEK9-204ENST00000554258 PRPF40BQ6NWY9 871 aaKnown RBP23.33■■□□□ 1.33
NEK9-204ENST00000554258 FMR1Q06787 632 aaKnown RBP eCLIP23.31■■□□□ 1.32
NEK9-204ENST00000554258 CCDC24Q8N4L8 307 aa23.31■■□□□ 1.32
NEK9-204ENST00000554258 CYP19A1P11511 503 aaPredicted RBP23.3■■□□□ 1.32
NEK9-204ENST00000554258 SLC24A1O60721 1099 aa23.29■■□□□ 1.32
NEK9-204ENST00000554258 STYK1Q6J9G0 422 aa23.29■■□□□ 1.32
NEK9-204ENST00000554258 ZBTB1Q9Y2K1 713 aa23.29■■□□□ 1.32
NEK9-204ENST00000554258 TLL2Q9Y6L7 1015 aa23.29■■□□□ 1.32
NEK9-204ENST00000554258 EIF4A2Q14240 407 aaKnown RBP23.28■■□□□ 1.32
NEK9-204ENST00000554258 C1orf141Q5JVX7 400 aa23.28■■□□□ 1.32
NEK9-204ENST00000554258 PRR5LQ6MZQ0 368 aa23.28■■□□□ 1.32
NEK9-204ENST00000554258 BRPF1P55201 1214 aaPredicted RBP23.27■■□□□ 1.32
NEK9-204ENST00000554258 AMOTQ4VCS5 1084 aa23.27■■□□□ 1.32
NEK9-204ENST00000554258 CCDC93Q567U6 631 aa23.27■■□□□ 1.32
NEK9-204ENST00000554258 ZNF277Q9NRM2 450 aaPredicted RBP23.27■■□□□ 1.32
NEK9-204ENST00000554258 CST9Q5W186 159 aa23.26■■□□□ 1.31
NEK9-204ENST00000554258 SCN11AQ9UI33 1791 aa23.25■■□□□ 1.31
NEK9-204ENST00000554258 NPHP1O15259 732 aa23.25■■□□□ 1.31
NEK9-204ENST00000554258 TBC1D9BQ66K14 1250 aa23.25■■□□□ 1.31
NEK9-204ENST00000554258 GPC2Q8N158 579 aa23.25■■□□□ 1.31
NEK9-204ENST00000554258 SRGNP10124 158 aa23.24■■□□□ 1.31
NEK9-204ENST00000554258 FKBP4Q02790 459 aaKnown RBP eCLIP23.24■■□□□ 1.31
NEK9-204ENST00000554258 MASTLQ96GX5 879 aa23.24■■□□□ 1.31
NEK9-204ENST00000554258 TRAF5O00463 557 aa23.23■■□□□ 1.31
NEK9-204ENST00000554258 CANXP27824 592 aaKnown RBP23.22■■□□□ 1.31
NEK9-204ENST00000554258 LMOD1P29536 600 aaPredicted RBP23.22■■□□□ 1.31
NEK9-204ENST00000554258 CIAPIN1Q6FI81 312 aa23.22■■□□□ 1.31
NEK9-204ENST00000554258 GCC1Q96CN9 775 aa23.22■■□□□ 1.31
NEK9-204ENST00000554258 POLKQ9UBT6 870 aa23.22■■□□□ 1.31
NEK9-204ENST00000554258 FZD9O00144 591 aa23.21■■□□□ 1.31
NEK9-204ENST00000554258 CNBD1Q8NA66 436 aa23.21■■□□□ 1.31
NEK9-204ENST00000554258 C7orf43Q8WVR3 580 aa23.21■■□□□ 1.31
NEK9-204ENST00000554258 SCN7AQ01118 1682 aa23.2■■□□□ 1.3
NEK9-204ENST00000554258 SAPCD2Q86UD0 394 aa23.2■■□□□ 1.3
NEK9-204ENST00000554258 A0A087WZG4 1122 aa23.19■■□□□ 1.3
NEK9-204ENST00000554258 ST5P78524 1137 aa23.19■■□□□ 1.3
NEK9-204ENST00000554258 IARSP41252 1262 aaKnown RBP23.18■■□□□ 1.3
NEK9-204ENST00000554258 CARD14Q9BXL6 1004 aa23.18■■□□□ 1.3
NEK9-204ENST00000554258 GJA3Q9Y6H8 435 aa23.18■■□□□ 1.3
NEK9-204ENST00000554258 RTKN2Q8IZC4 609 aa23.16■■□□□ 1.3
NEK9-204ENST00000554258 NBPF15Q8N660 670 aa23.16■■□□□ 1.3
NEK9-204ENST00000554258 HHIPL1Q96JK4 782 aa23.16■■□□□ 1.3
NEK9-204ENST00000554258 CELF2O95319 508 aaKnown RBP23.15■■□□□ 1.3
NEK9-204ENST00000554258 EIF5P55010 431 aaKnown RBP23.15■■□□□ 1.3
NEK9-204ENST00000554258 SLC39A6Q13433 755 aa23.15■■□□□ 1.3
NEK9-204ENST00000554258 JDP2Q8WYK2 163 aa23.15■■□□□ 1.3
NEK9-204ENST00000554258 SETDB2Q96T68 719 aa23.15■■□□□ 1.3
NEK9-204ENST00000554258 EPS15P42566 896 aa23.14■■□□□ 1.29
NEK9-204ENST00000554258 EIF6P56537 245 aaKnown RBP23.14■■□□□ 1.29
NEK9-204ENST00000554258 USP50Q70EL3 339 aaPredicted RBP23.14■■□□□ 1.29
NEK9-204ENST00000554258 SLC52A2Q9HAB3 445 aa23.14■■□□□ 1.29
NEK9-204ENST00000554258 BCORQ6W2J9 1755 aa23.14■■□□□ 1.29
NEK9-204ENST00000554258 OLFM4Q6UX06 510 aa23.13■■□□□ 1.29
NEK9-204ENST00000554258 NOGQ13253 232 aa23.12■■□□□ 1.29
NEK9-204ENST00000554258 VSIG10Q8N0Z9 540 aa23.12■■□□□ 1.29
NEK9-204ENST00000554258 SYNE4Q8N205 404 aa23.12■■□□□ 1.29
NEK9-204ENST00000554258 TBC1D2BQ9UPU7 963 aa23.12■■□□□ 1.29
NEK9-204ENST00000554258 ZNF330Q9Y3S2 320 aaPredicted RBP23.12■■□□□ 1.29
NEK9-204ENST00000554258 NPR1P16066 1061 aa23.11■■□□□ 1.29
NEK9-204ENST00000554258 TNNT2P45379 298 aaPredicted RBP23.11■■□□□ 1.29
NEK9-204ENST00000554258 SCNN1DP51172 638 aa23.11■■□□□ 1.29
NEK9-204ENST00000554258 HABP4Q5JVS0 413 aaKnown RBP23.11■■□□□ 1.29
NEK9-204ENST00000554258 STARD3NLO95772 234 aa23.1■■□□□ 1.29
NEK9-204ENST00000554258 AEBP1Q8IUX7 1158 aa23.1■■□□□ 1.29
NEK9-204ENST00000554258 ZIC5Q96T25 663 aa23.09■■□□□ 1.29
NEK9-204ENST00000554258 ZNF408Q9H9D4 720 aa23.08■■□□□ 1.29
NEK9-204ENST00000554258 AKAP11Q9UKA4 1901 aa23.08■■□□□ 1.28
NEK9-204ENST00000554258 UBR2Q8IWV8 1755 aa23.06■■□□□ 1.28
NEK9-204ENST00000554258 MRC1P22897 1456 aa23.06■■□□□ 1.28
NEK9-204ENST00000554258 ZEB1P37275 1124 aaPredicted RBP23.06■■□□□ 1.28
NEK9-204ENST00000554258 CDCA8Q53HL2 280 aa23.06■■□□□ 1.28
NEK9-204ENST00000554258 AKAP4Q5JQC9 854 aa23.06■■□□□ 1.28
NEK9-204ENST00000554258 LGR6Q9HBX8 967 aa23.06■■□□□ 1.28
NEK9-204ENST00000554258 SAGE1Q9NXZ1 904 aa23.06■■□□□ 1.28
NEK9-204ENST00000554258 CTU1Q7Z7A3 348 aaKnown RBP23.05■■□□□ 1.28
NEK9-204ENST00000554258 GLIS2Q9BZE0 524 aaPredicted RBP23.05■■□□□ 1.28
NEK9-204ENST00000554258 COL4A5P29400 1685 aa23.04■■□□□ 1.28
NEK9-204ENST00000554258 NPM2Q86SE8 214 aaKnown RBP23.04■■□□□ 1.28
NEK9-204ENST00000554258 NBPF5PQ86XG9 351 aaPredicted RBP23.04■■□□□ 1.28
NEK9-204ENST00000554258 PSMD1Q99460 953 aa23.04■■□□□ 1.28
NEK9-204ENST00000554258 ADARB2Q9NS39 739 aaKnown RBP23.03■■□□□ 1.28
NEK9-204ENST00000554258 SULT6B1Q6IMI4 303 aa23.02■■□□□ 1.28
NEK9-204ENST00000554258 HPS5Q9UPZ3 1129 aa23.02■■□□□ 1.28
NEK9-204ENST00000554258 CAMTA2O94983 1202 aa23.01■■□□□ 1.27
NEK9-204ENST00000554258 MKI67P46013 3256 aaKnown RBP23■■□□□ 1.27
NEK9-204ENST00000554258 RNMTO43148 476 aaKnown RBP23■■□□□ 1.27
NEK9-204ENST00000554258 TRPA1O75762 1119 aa23■■□□□ 1.27
NEK9-204ENST00000554258 IL6STP40189 918 aaPredicted RBP23■■□□□ 1.27
NEK9-204ENST00000554258 HUNKP57058 714 aa23■■□□□ 1.27
NEK9-204ENST00000554258 KLRG2A4D1S0 409 aaPredicted RBP22.99■■□□□ 1.27
NEK9-204ENST00000554258 ALDH1B1P30837 517 aa22.99■■□□□ 1.27
NEK9-204ENST00000554258 TTC5Q8N0Z6 440 aa22.99■■□□□ 1.27
NEK9-204ENST00000554258 LARGE2Q8N3Y3 721 aa22.99■■□□□ 1.27
NEK9-204ENST00000554258 GPRC5DQ9NZD1 345 aa22.99■■□□□ 1.27
NEK9-204ENST00000554258 RNF186Q9NXI6 227 aa22.98■■□□□ 1.27
NEK9-204ENST00000554258 SNED1Q8TER0 1413 aa22.97■■□□□ 1.27
NEK9-204ENST00000554258 FXR1P51114 621 aaKnown RBP eCLIP22.95■■□□□ 1.26
NEK9-204ENST00000554258 KIF23Q02241 960 aaPredicted RBP22.95■■□□□ 1.26
NEK9-204ENST00000554258 DZIP3Q86Y13 1208 aaKnown RBP22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms