RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 TBC1D9Q6ZT07 1266 aa15.79■□□□□ 0.12
VIPAS39-206ENST00000553888 POLA2Q14181 598 aa15.79■□□□□ 0.12
VIPAS39-206ENST00000553888 LRRCC1Q9C099 1032 aa15.79■□□□□ 0.12
VIPAS39-206ENST00000553888 A0A0G2JS52 829 aa15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 NEURL1BA8MQ27 555 aa15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 GRM8O00222 908 aa15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 TNS2Q63HR2 1409 aa15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 PA2G4Q9UQ80 394 aaKnown RBP15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 CCDC9Q9Y3X0 531 aaKnown RBP15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 EXOC5O00471 708 aa15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 METTL22Q9BUU2 404 aaPredicted RBP15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 ATG3Q9NT62 314 aa15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 ZNF330Q9Y3S2 320 aaPredicted RBP15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 SPATA31A1Q5TZJ5 1347 aa15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 RBM42Q9BTD8 480 aaKnown RBP15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 UPF2Q9HAU5 1272 aaKnown RBP15.78■□□□□ 0.12
VIPAS39-206ENST00000553888 DOT1LQ8TEK3 1739 aa15.77■□□□□ 0.12
VIPAS39-206ENST00000553888 DDRGK1Q96HY6 314 aa15.77■□□□□ 0.12
VIPAS39-206ENST00000553888 BICC1Q9H694 974 aaKnown RBP15.77■□□□□ 0.12
VIPAS39-206ENST00000553888 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.77■□□□□ 0.11
VIPAS39-206ENST00000553888 SDSP20132 328 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 PDE1AP54750 535 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 EPHA10Q5JZY3 1008 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 NUTM1Q86Y26 1132 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 DNAJC10Q8IXB1 793 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 C22orf23Q9BZE7 217 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 TUBGCP6Q96RT7 1819 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 NEXNQ0ZGT2 675 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 GCKRQ14397 625 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 RTL5Q5HYW3 569 aaPredicted RBP15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 ZBTB3Q9H5J0 574 aa15.76■□□□□ 0.11
VIPAS39-206ENST00000553888 NUP188Q5SRE5 1749 aa15.75■□□□□ 0.11
VIPAS39-206ENST00000553888 SALL3Q9BXA9 1300 aa15.75■□□□□ 0.11
VIPAS39-206ENST00000553888 KLHDC4Q8TBB5 520 aa15.75■□□□□ 0.11
VIPAS39-206ENST00000553888 ACSBG1Q96GR2 724 aa15.75■□□□□ 0.11
VIPAS39-206ENST00000553888 SLC4A9Q96Q91 983 aa15.75■□□□□ 0.11
VIPAS39-206ENST00000553888 PRIM1P49642 420 aaKnown RBP15.74■□□□□ 0.11
VIPAS39-206ENST00000553888 C8orf37Q96NL8 207 aa15.74■□□□□ 0.11
VIPAS39-206ENST00000553888 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.74■□□□□ 0.11
VIPAS39-206ENST00000553888 RHPN1Q8TCX5 695 aa15.74■□□□□ 0.11
VIPAS39-206ENST00000553888 UTYO14607 1347 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 BCL9O00512 1426 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 CDC45O75419 566 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 UBE3BQ7Z3V4 1068 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 PLBD2Q8NHP8 589 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 MX1P20591 662 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 DDB1Q16531 1140 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 SPATA31A5Q5VU36 1347 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 SPATA31A7Q8IWB4 1347 aa15.73■□□□□ 0.11
VIPAS39-206ENST00000553888 SLIT2O94813 1529 aa15.72■□□□□ 0.11
VIPAS39-206ENST00000553888 OS9Q13438 667 aaPredicted RBP15.72■□□□□ 0.11
VIPAS39-206ENST00000553888 MARCH10Q8NA82 808 aaPredicted RBP15.72■□□□□ 0.11
VIPAS39-206ENST00000553888 SIL1Q9H173 461 aa15.72■□□□□ 0.11
VIPAS39-206ENST00000553888 NWD2Q9ULI1 1742 aa15.72■□□□□ 0.11
VIPAS39-206ENST00000553888 MTX1Q13505 466 aa15.71■□□□□ 0.11
VIPAS39-206ENST00000553888 MAP4K4O95819 1239 aaPredicted RBP15.71■□□□□ 0.11
VIPAS39-206ENST00000553888 UNC5CLQ8IV45 518 aa15.71■□□□□ 0.11
VIPAS39-206ENST00000553888 A0A087WZG4 1122 aa15.71■□□□□ 0.1
VIPAS39-206ENST00000553888 TJP1Q07157 1748 aa15.7■□□□□ 0.1
VIPAS39-206ENST00000553888 FAM98CQ17RN3 349 aaKnown RBP15.7■□□□□ 0.1
VIPAS39-206ENST00000553888 BCL11BQ9C0K0 894 aaPredicted RBP15.7■□□□□ 0.1
VIPAS39-206ENST00000553888 OSBPL3Q9H4L5 887 aa15.7■□□□□ 0.1
VIPAS39-206ENST00000553888 NBR1Q14596 966 aa15.7■□□□□ 0.1
VIPAS39-206ENST00000553888 NGLY1Q96IV0 654 aa15.7■□□□□ 0.1
VIPAS39-206ENST00000553888 AK9Q5TCS8 1911 aa15.69■□□□□ 0.1
VIPAS39-206ENST00000553888 ERBB4Q15303 1308 aa15.69■□□□□ 0.1
VIPAS39-206ENST00000553888 LRP6O75581 1613 aa15.69■□□□□ 0.1
VIPAS39-206ENST00000553888 RAB11FIP3O75154 756 aa15.69■□□□□ 0.1
VIPAS39-206ENST00000553888 KIF1BPQ96EK5 621 aa15.69■□□□□ 0.1
VIPAS39-206ENST00000553888 RILPL2Q969X0 211 aa15.68■□□□□ 0.1
VIPAS39-206ENST00000553888 TRIM6-TRIM34B2RNG4 842 aa15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 CASP7P55210 303 aa15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 BCL9LQ86UU0 1499 aa15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 KCNQ2O43526 872 aa15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 SASH1O94885 1247 aa15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 TBC1D2Q9BYX2 928 aa15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 THRAP3Q9Y2W1 955 aaKnown RBP15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 SPRYD3Q8NCJ5 442 aa15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 ZBTB1Q9Y2K1 713 aa15.67■□□□□ 0.1
VIPAS39-206ENST00000553888 STAP2Q9UGK3 403 aa15.66■□□□□ 0.1
VIPAS39-206ENST00000553888 CYP19A1P11511 503 aaPredicted RBP15.66■□□□□ 0.1
VIPAS39-206ENST00000553888 PI4K2BQ8TCG2 481 aa15.66■□□□□ 0.1
VIPAS39-206ENST00000553888 KIF2CQ99661 725 aa15.66■□□□□ 0.1
VIPAS39-206ENST00000553888 JCADQ9P266 1359 aa15.65■□□□□ 0.1
VIPAS39-206ENST00000553888 RBM25P49756 843 aaKnown RBP15.65■□□□□ 0.1
VIPAS39-206ENST00000553888 VSIG10Q8N0Z9 540 aa15.65■□□□□ 0.1
VIPAS39-206ENST00000553888 HLFQ16534 295 aa15.65■□□□□ 0.1
VIPAS39-206ENST00000553888 DHX37Q8IY37 1157 aaKnown RBP15.65■□□□□ 0.1
VIPAS39-206ENST00000553888 CWC25Q9NXE8 425 aaPredicted RBP15.65■□□□□ 0.1
VIPAS39-206ENST00000553888 TLR7Q9NYK1 1049 aaKnown RBP15.65■□□□□ 0.1
VIPAS39-206ENST00000553888 STARD3NLO95772 234 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 FAM182BQ5T319 152 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 CDCA7Q9BWT1 371 aaPredicted RBP15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 CHMP3Q9Y3E7 222 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 LMBR1LQ6UX01 489 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 PTF1AQ7RTS3 328 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 RFX5P48382 616 aaPredicted RBP15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 G3BP1Q13283 466 aaKnown RBP eCLIP15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 HSP90AB4PQ58FF6 505 aa15.64■□□□□ 0.09
VIPAS39-206ENST00000553888 BARGINQ6ZT62 677 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms