RNA–Protein interactions for RNA: ENST00000547715.1

PTPRB-205, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 2

Gene PTPRB, Length 639 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-205ENST00000547715 EAPPQ56P03 285 aaPredicted RBP19.65■□□□□ 0.74
PTPRB-205ENST00000547715 ZNF790Q6PG37 636 aa19.65■□□□□ 0.74
PTPRB-205ENST00000547715 MASTLQ96GX5 879 aa19.65■□□□□ 0.74
PTPRB-205ENST00000547715 TAF1DQ9H5J8 278 aaPredicted RBP19.65■□□□□ 0.74
PTPRB-205ENST00000547715 SIPA1L3O60292 1781 aaPredicted RBP19.65■□□□□ 0.74
PTPRB-205ENST00000547715 BCORQ6W2J9 1755 aa19.65■□□□□ 0.74
PTPRB-205ENST00000547715 L3MBTL3Q96JM7 780 aaPredicted RBP19.64■□□□□ 0.73
PTPRB-205ENST00000547715 DIAPH1O60610 1272 aaKnown RBP19.63■□□□□ 0.73
PTPRB-205ENST00000547715 ITGBL1O95965 494 aaPredicted RBP19.63■□□□□ 0.73
PTPRB-205ENST00000547715 LBX1P52954 281 aa19.63■□□□□ 0.73
PTPRB-205ENST00000547715 CLEC11AQ9Y240 323 aa19.63■□□□□ 0.73
PTPRB-205ENST00000547715 CAMTA2O94983 1202 aa19.62■□□□□ 0.73
PTPRB-205ENST00000547715 A1BGP04217 495 aa19.62■□□□□ 0.73
PTPRB-205ENST00000547715 AMER1Q5JTC6 1135 aaPredicted RBP19.62■□□□□ 0.73
PTPRB-205ENST00000547715 CCDC93Q567U6 631 aa19.61■□□□□ 0.73
PTPRB-205ENST00000547715 WBP1LQ9NX94 342 aa19.61■□□□□ 0.73
PTPRB-205ENST00000547715 ADAMTSL1Q8N6G6 1762 aa19.6■□□□□ 0.73
PTPRB-205ENST00000547715 DZIP3Q86Y13 1208 aaKnown RBP19.6■□□□□ 0.73
PTPRB-205ENST00000547715 IL17REQ8NFR9 667 aa19.6■□□□□ 0.73
PTPRB-205ENST00000547715 FMNL2Q96PY5 1086 aa19.6■□□□□ 0.73
PTPRB-205ENST00000547715 HACL1Q9UJ83 578 aa19.6■□□□□ 0.73
PTPRB-205ENST00000547715 ZNF541Q9H0D2 1346 aa19.59■□□□□ 0.73
PTPRB-205ENST00000547715 GNAT3A8MTJ3 354 aa19.59■□□□□ 0.73
PTPRB-205ENST00000547715 NBPF5PQ86XG9 351 aaPredicted RBP19.59■□□□□ 0.73
PTPRB-205ENST00000547715 C7orf43Q8WVR3 580 aa19.59■□□□□ 0.73
PTPRB-205ENST00000547715 EPHX2P34913 555 aa19.58■□□□□ 0.72
PTPRB-205ENST00000547715 FKBP4Q02790 459 aaKnown RBP eCLIP19.58■□□□□ 0.72
PTPRB-205ENST00000547715 DEFB115Q30KQ5 88 aa19.58■□□□□ 0.72
PTPRB-205ENST00000547715 ZNF277Q9NRM2 450 aaPredicted RBP19.58■□□□□ 0.72
PTPRB-205ENST00000547715 RNF123Q5XPI4 1314 aa19.57■□□□□ 0.72
PTPRB-205ENST00000547715 NPR1P16066 1061 aa19.57■□□□□ 0.72
PTPRB-205ENST00000547715 TRIM26Q12899 539 aaPredicted RBP19.57■□□□□ 0.72
PTPRB-205ENST00000547715 RASSF10A6NK89 507 aa19.56■□□□□ 0.72
PTPRB-205ENST00000547715 PIP4K2AP48426 406 aaPredicted RBP19.56■□□□□ 0.72
PTPRB-205ENST00000547715 MAP1SQ66K74 1059 aaPredicted RBP19.56■□□□□ 0.72
PTPRB-205ENST00000547715 OLFM4Q6UX06 510 aa19.56■□□□□ 0.72
PTPRB-205ENST00000547715 PNMA8AQ86V59 439 aaPredicted RBP19.56■□□□□ 0.72
PTPRB-205ENST00000547715 CNTROBQ8N137 903 aa19.56■□□□□ 0.72
PTPRB-205ENST00000547715 GAS2L2Q8NHY3 880 aa19.56■□□□□ 0.72
PTPRB-205ENST00000547715 ABHD8Q96I13 439 aa19.56■□□□□ 0.72
PTPRB-205ENST00000547715 U2SURPO15042 1029 aaKnown RBP19.55■□□□□ 0.72
PTPRB-205ENST00000547715 HSPA8P11142 646 aaKnown RBP19.55■□□□□ 0.72
PTPRB-205ENST00000547715 WDR33Q9C0J8 1336 aaKnown RBP19.54■□□□□ 0.72
PTPRB-205ENST00000547715 KCNQ3O43525 872 aa19.54■□□□□ 0.72
PTPRB-205ENST00000547715 SLC34A2O95436 690 aa19.54■□□□□ 0.72
PTPRB-205ENST00000547715 MAP2K1Q02750 393 aaPredicted RBP19.54■□□□□ 0.72
PTPRB-205ENST00000547715 FAM161AQ3B820 660 aa19.54■□□□□ 0.72
PTPRB-205ENST00000547715 CLEC4GQ6UXB4 293 aa19.54■□□□□ 0.72
PTPRB-205ENST00000547715 ABT1Q9ULW3 272 aaKnown RBP19.54■□□□□ 0.72
PTPRB-205ENST00000547715 ZNF652Q9Y2D9 606 aa19.54■□□□□ 0.72
PTPRB-205ENST00000547715 USP16Q9Y5T5 823 aa19.54■□□□□ 0.72
PTPRB-205ENST00000547715 CLSPNQ9HAW4 1339 aa19.53■□□□□ 0.72
PTPRB-205ENST00000547715 BTBD11A6QL63 1104 aa19.53■□□□□ 0.72
PTPRB-205ENST00000547715 CC2D1BQ5T0F9 858 aaKnown RBP19.53■□□□□ 0.72
PTPRB-205ENST00000547715 RTKN2Q8IZC4 609 aa19.53■□□□□ 0.72
PTPRB-205ENST00000547715 KLRG2A4D1S0 409 aaPredicted RBP19.52■□□□□ 0.72
PTPRB-205ENST00000547715 FZD9O00144 591 aa19.52■□□□□ 0.72
PTPRB-205ENST00000547715 IARSP41252 1262 aaKnown RBP19.52■□□□□ 0.72
PTPRB-205ENST00000547715 TPTE2Q6XPS3 522 aa19.52■□□□□ 0.72
PTPRB-205ENST00000547715 FAM177BA6PVY3 158 aa19.51■□□□□ 0.71
PTPRB-205ENST00000547715 GPC2Q8N158 579 aa19.51■□□□□ 0.71
PTPRB-205ENST00000547715 PCGF6Q9BYE7 350 aa19.51■□□□□ 0.71
PTPRB-205ENST00000547715 NIP7Q9Y221 180 aaKnown RBP eCLIP19.51■□□□□ 0.71
PTPRB-205ENST00000547715 CEMIPQ8WUJ3 1361 aa19.51■□□□□ 0.71
PTPRB-205ENST00000547715 COL3A1P02461 1466 aaPredicted RBP19.5■□□□□ 0.71
PTPRB-205ENST00000547715 PRAMEF22A3QJZ6 481 aa19.5■□□□□ 0.71
PTPRB-205ENST00000547715 SYNE4Q8N205 404 aa19.5■□□□□ 0.71
PTPRB-205ENST00000547715 JDP2Q8WYK2 163 aa19.5■□□□□ 0.71
PTPRB-205ENST00000547715 ALDH1B1P30837 517 aa19.49■□□□□ 0.71
PTPRB-205ENST00000547715 PAXIP1Q6ZW49 1069 aaPredicted RBP19.49■□□□□ 0.71
PTPRB-205ENST00000547715 DDX21Q9NR30 783 aaKnown RBP eCLIP19.49■□□□□ 0.71
PTPRB-205ENST00000547715 GTF2E1P29083 439 aaPredicted RBP19.48■□□□□ 0.71
PTPRB-205ENST00000547715 GRM1Q13255 1194 aa19.48■□□□□ 0.71
PTPRB-205ENST00000547715 CNGB1Q14028 1251 aaPredicted RBP19.48■□□□□ 0.71
PTPRB-205ENST00000547715 BEGAINQ9BUH8 593 aa19.48■□□□□ 0.71
PTPRB-205ENST00000547715 GJA3Q9Y6H8 435 aa19.48■□□□□ 0.71
PTPRB-205ENST00000547715 TRPM7Q96QT4 1865 aa19.48■□□□□ 0.71
PTPRB-205ENST00000547715 THSD7BQ9C0I4 1608 aa19.47■□□□□ 0.71
PTPRB-205ENST00000547715 PER1O15534 1290 aaPredicted RBP19.47■□□□□ 0.71
PTPRB-205ENST00000547715 LTBP1Q14766 1721 aa19.47■□□□□ 0.71
PTPRB-205ENST00000547715 KIF7Q2M1P5 1343 aa19.47■□□□□ 0.71
PTPRB-205ENST00000547715 CCDC85CA6NKD9 419 aa19.46■□□□□ 0.71
PTPRB-205ENST00000547715 SNRPA1P09661 255 aaKnown RBP19.46■□□□□ 0.71
PTPRB-205ENST00000547715 LMOD1P29536 600 aaPredicted RBP19.46■□□□□ 0.71
PTPRB-205ENST00000547715 EIF6P56537 245 aaKnown RBP19.46■□□□□ 0.71
PTPRB-205ENST00000547715 PHACTR3Q96KR7 559 aa19.46■□□□□ 0.71
PTPRB-205ENST00000547715 CAPNS2Q96L46 248 aa19.46■□□□□ 0.71
PTPRB-205ENST00000547715 MLLT1Q03111 559 aaPredicted RBP19.45■□□□□ 0.7
PTPRB-205ENST00000547715 FMR1Q06787 632 aaKnown RBP eCLIP19.45■□□□□ 0.7
PTPRB-205ENST00000547715 PSMD1Q99460 953 aa19.45■□□□□ 0.7
PTPRB-205ENST00000547715 SNED1Q8TER0 1413 aa19.44■□□□□ 0.7
PTPRB-205ENST00000547715 COL4A5P29400 1685 aa19.44■□□□□ 0.7
PTPRB-205ENST00000547715 NBPF26B4DH59 902 aa19.44■□□□□ 0.7
PTPRB-205ENST00000547715 PRKAR2BP31323 418 aa19.44■□□□□ 0.7
PTPRB-205ENST00000547715 ECE1P42892 770 aa19.44■□□□□ 0.7
PTPRB-205ENST00000547715 CYP4F22Q6NT55 531 aa19.44■□□□□ 0.7
PTPRB-205ENST00000547715 NBPF10Q6P3W6 841 aaKnown RBP19.44■□□□□ 0.7
PTPRB-205ENST00000547715 NBPF15Q8N660 670 aa19.44■□□□□ 0.7
PTPRB-205ENST00000547715 GPR101Q96P66 508 aaPredicted RBP19.44■□□□□ 0.7
PTPRB-205ENST00000547715 RGL2O15211 777 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms