RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	MASTL	Q96GX5	879 aa		30.66	■■■□□ 2.5
SMARCD1-204	ENST00000547637	TAF7	Q15545	349 aa	Predicted RBP	30.65	■■■□□ 2.5
SMARCD1-204	ENST00000547637	ERFE	Q4G0M1	354 aa		30.65	■■■□□ 2.5
SMARCD1-204	ENST00000547637	WDR90	Q96KV7	1748 aa		30.64	■■■□□ 2.5
SMARCD1-204	ENST00000547637	KLRG1	Q96E93	195 aa		30.64	■■■□□ 2.5
SMARCD1-204	ENST00000547637	RGL2	O15211	777 aa		30.63	■■■□□ 2.49
SMARCD1-204	ENST00000547637	TPTE2	Q6XPS3	522 aa		30.63	■■■□□ 2.49
SMARCD1-204	ENST00000547637	TAOK3	Q9H2K8	898 aa		30.63	■■■□□ 2.49
SMARCD1-204	ENST00000547637	ANKRD31	Q8N7Z5	1873 aa		30.63	■■■□□ 2.49
SMARCD1-204	ENST00000547637	SRGN	P10124	158 aa		30.62	■■■□□ 2.49
SMARCD1-204	ENST00000547637	PIP4K2A	P48426	406 aa	Predicted RBP	30.61	■■■□□ 2.49
SMARCD1-204	ENST00000547637	PRELP	P51888	382 aa		30.61	■■■□□ 2.49
SMARCD1-204	ENST00000547637	DCTN1	Q14203	1278 aa		30.61	■■■□□ 2.49
SMARCD1-204	ENST00000547637	PNISR	Q8TF01	805 aa	Known RBP	30.61	■■■□□ 2.49
SMARCD1-204	ENST00000547637	PNN	Q9H307	717 aa	Known RBP	30.61	■■■□□ 2.49
SMARCD1-204	ENST00000547637	LTBP3	Q9NS15	1303 aa		30.61	■■■□□ 2.49
SMARCD1-204	ENST00000547637	PRAMEF22	A3QJZ6	481 aa		30.59	■■■□□ 2.49
SMARCD1-204	ENST00000547637	PRPF40B	Q6NWY9	871 aa	Known RBP	30.59	■■■□□ 2.49
SMARCD1-204	ENST00000547637	NIP7	Q9Y221	180 aa	Known RBP eCLIP	30.59	■■■□□ 2.49
SMARCD1-204	ENST00000547637	TIAM2	Q8IVF5	1701 aa		30.57	■■■□□ 2.48
SMARCD1-204	ENST00000547637	GTF2E1	P29083	439 aa	Predicted RBP	30.57	■■■□□ 2.48
SMARCD1-204	ENST00000547637	HTRA3	P83110	453 aa		30.57	■■■□□ 2.48
SMARCD1-204	ENST00000547637	BCOR	Q6W2J9	1755 aa		30.56	■■■□□ 2.48
SMARCD1-204	ENST00000547637	NPR1	P16066	1061 aa		30.56	■■■□□ 2.48
SMARCD1-204	ENST00000547637	FER1L6	Q2WGJ9	1857 aa		30.55	■■■□□ 2.48
SMARCD1-204	ENST00000547637	DICER1	Q9UPY3	1922 aa	Known RBP	30.55	■■■□□ 2.48
SMARCD1-204	ENST00000547637	JMY	Q8N9B5	988 aa		30.54	■■■□□ 2.48
SMARCD1-204	ENST00000547637	CCDC93	Q567U6	631 aa		30.53	■■■□□ 2.48
SMARCD1-204	ENST00000547637	COL11A2	P13942	1736 aa	Predicted RBP	30.53	■■■□□ 2.48
SMARCD1-204	ENST00000547637	NBPF26	B4DH59	902 aa		30.52	■■■□□ 2.48
SMARCD1-204	ENST00000547637	NBPF10	Q6P3W6	841 aa	Known RBP	30.52	■■■□□ 2.48
SMARCD1-204	ENST00000547637	NBPF15	Q8N660	670 aa		30.52	■■■□□ 2.48
SMARCD1-204	ENST00000547637	ALDH1B1	P30837	517 aa		30.51	■■■□□ 2.47
SMARCD1-204	ENST00000547637	MIS18A	Q9NYP9	233 aa		30.51	■■■□□ 2.47
SMARCD1-204	ENST00000547637	SLX4	Q8IY92	1834 aa		30.51	■■■□□ 2.47
SMARCD1-204	ENST00000547637	MAPK8IP3	Q9UPT6	1336 aa		30.5	■■■□□ 2.47
SMARCD1-204	ENST00000547637	FAM177B	A6PVY3	158 aa		30.5	■■■□□ 2.47
SMARCD1-204	ENST00000547637	NYX	Q9GZU5	481 aa		30.5	■■■□□ 2.47
SMARCD1-204	ENST00000547637	RTKN2	Q8IZC4	609 aa		30.49	■■■□□ 2.47
SMARCD1-204	ENST00000547637	CACNA1S	Q13698	1873 aa		30.48	■■■□□ 2.47
SMARCD1-204	ENST00000547637	KLRG2	A4D1S0	409 aa	Predicted RBP	30.48	■■■□□ 2.47
SMARCD1-204	ENST00000547637	POTEC	B2RU33	542 aa		30.48	■■■□□ 2.47
SMARCD1-204	ENST00000547637	IQCA1L	A6NCM1	817 aa		30.47	■■■□□ 2.47
SMARCD1-204	ENST00000547637	ERVV-1	B6SEH8	477 aa		30.47	■■■□□ 2.47
SMARCD1-204	ENST00000547637	NFE2L2	Q16236	605 aa		30.47	■■■□□ 2.47
SMARCD1-204	ENST00000547637	KIF6	Q6ZMV9	814 aa		30.47	■■■□□ 2.47
SMARCD1-204	ENST00000547637	NGEF	Q8N5V2	710 aa		30.47	■■■□□ 2.47
SMARCD1-204	ENST00000547637	ARFGEF2	Q9Y6D5	1785 aa		30.46	■■■□□ 2.47
SMARCD1-204	ENST00000547637	DDN	O94850	711 aa	Predicted RBP	30.46	■■■□□ 2.47
SMARCD1-204	ENST00000547637	FKBP4	Q02790	459 aa	Known RBP eCLIP	30.45	■■■□□ 2.47
SMARCD1-204	ENST00000547637	HLF	Q16534	295 aa		30.45	■■■□□ 2.47
SMARCD1-204	ENST00000547637	C7orf43	Q8WVR3	580 aa		30.45	■■■□□ 2.47
SMARCD1-204	ENST00000547637	RRP7A	Q9Y3A4	280 aa	Known RBP	30.45	■■■□□ 2.47
SMARCD1-204	ENST00000547637	CHADL	Q6NUI6	762 aa		30.44	■■■□□ 2.46
SMARCD1-204	ENST00000547637	PLEKHF1	Q96S99	279 aa		30.43	■■■□□ 2.46
SMARCD1-204	ENST00000547637	EIF4A1	P60842	406 aa	Known RBP	30.42	■■■□□ 2.46
SMARCD1-204	ENST00000547637	MAP3K15	Q6ZN16	1313 aa		30.42	■■■□□ 2.46
SMARCD1-204	ENST00000547637	DLG5	Q8TDM6	1919 aa		30.41	■■■□□ 2.46
SMARCD1-204	ENST00000547637	LAMB4	A4D0S4	1761 aa		30.4	■■■□□ 2.46
SMARCD1-204	ENST00000547637	MYL6B	P14649	208 aa		30.39	■■■□□ 2.46
SMARCD1-204	ENST00000547637	CC2D2B	Q6DHV5	1058 aa		30.38	■■■□□ 2.45
SMARCD1-204	ENST00000547637	ZNF277	Q9NRM2	450 aa	Predicted RBP	30.38	■■■□□ 2.45
SMARCD1-204	ENST00000547637	RPGR	Q92834	1020 aa	Known RBP	30.37	■■■□□ 2.45
SMARCD1-204	ENST00000547637	L3MBTL3	Q96JM7	780 aa	Predicted RBP	30.37	■■■□□ 2.45
SMARCD1-204	ENST00000547637	ERBB4	Q15303	1308 aa		30.37	■■■□□ 2.45
SMARCD1-204	ENST00000547637	GRIPAP1	Q4V328	841 aa		30.36	■■■□□ 2.45
SMARCD1-204	ENST00000547637	LDHD	Q86WU2	507 aa		30.36	■■■□□ 2.45
SMARCD1-204	ENST00000547637	JDP2	Q8WYK2	163 aa		30.36	■■■□□ 2.45
SMARCD1-204	ENST00000547637	CREBZF	Q9NS37	354 aa		30.36	■■■□□ 2.45
SMARCD1-204	ENST00000547637	IARS	P41252	1262 aa	Known RBP	30.35	■■■□□ 2.45
SMARCD1-204	ENST00000547637	SYNE4	Q8N205	404 aa		30.35	■■■□□ 2.45
SMARCD1-204	ENST00000547637	THUMPD2	Q9BTF0	503 aa	Known RBP	30.35	■■■□□ 2.45
SMARCD1-204	ENST00000547637	TSPYL4	Q9UJ04	414 aa		30.35	■■■□□ 2.45
SMARCD1-204	ENST00000547637	KDM3B	Q7LBC6	1761 aa		30.35	■■■□□ 2.45
SMARCD1-204	ENST00000547637	SCN4A	P35499	1836 aa		30.34	■■■□□ 2.45
SMARCD1-204	ENST00000547637	RALBP1	Q15311	655 aa		30.34	■■■□□ 2.45
SMARCD1-204	ENST00000547637	CRY2	Q49AN0	593 aa		30.34	■■■□□ 2.45
SMARCD1-204	ENST00000547637	PPP1R42	Q7Z4L9	355 aa		30.34	■■■□□ 2.45
SMARCD1-204	ENST00000547637	NUTM1	Q86Y26	1132 aa		30.34	■■■□□ 2.45
SMARCD1-204	ENST00000547637	TMX4	Q9H1E5	349 aa	Predicted RBP	30.34	■■■□□ 2.45
SMARCD1-204	ENST00000547637	ZBTB3	Q9H5J0	574 aa		30.34	■■■□□ 2.45
SMARCD1-204	ENST00000547637	NUP98	P52948	1817 aa		30.33	■■■□□ 2.45
SMARCD1-204	ENST00000547637	LMOD3	Q0VAK6	560 aa		30.33	■■■□□ 2.45
SMARCD1-204	ENST00000547637	TTLL7	Q6ZT98	887 aa		30.33	■■■□□ 2.45
SMARCD1-204	ENST00000547637	TAF1D	Q9H5J8	278 aa	Predicted RBP	30.33	■■■□□ 2.45
SMARCD1-204	ENST00000547637	HACL1	Q9UJ83	578 aa		30.33	■■■□□ 2.45
SMARCD1-204	ENST00000547637	GPT	P24298	496 aa		30.32	■■■□□ 2.44
SMARCD1-204	ENST00000547637	RIPK4	P57078	832 aa		30.32	■■■□□ 2.44
SMARCD1-204	ENST00000547637	RBM17	Q96I25	401 aa	Known RBP	30.32	■■■□□ 2.44
SMARCD1-204	ENST00000547637	PSMD1	Q99460	953 aa		30.32	■■■□□ 2.44
SMARCD1-204	ENST00000547637	BABAM1	Q9NWV8	329 aa		30.32	■■■□□ 2.44
SMARCD1-204	ENST00000547637	IBTK	Q9P2D0	1353 aa	Predicted RBP	30.31	■■■□□ 2.44
SMARCD1-204	ENST00000547637	GIGYF2	Q6Y7W6	1299 aa	Known RBP	30.31	■■■□□ 2.44
SMARCD1-204	ENST00000547637	PNMA8A	Q86V59	439 aa	Predicted RBP	30.31	■■■□□ 2.44
SMARCD1-204	ENST00000547637	PARP10	Q53GL7	1025 aa		30.3	■■■□□ 2.44
SMARCD1-204	ENST00000547637	EAPP	Q56P03	285 aa	Predicted RBP	30.3	■■■□□ 2.44
SMARCD1-204	ENST00000547637	COL13A1	Q5TAT6	717 aa	Predicted RBP	30.3	■■■□□ 2.44
SMARCD1-204	ENST00000547637	OLFM4	Q6UX06	510 aa		30.3	■■■□□ 2.44
SMARCD1-204	ENST00000547637	CLEC11A	Q9Y240	323 aa		30.3	■■■□□ 2.44
SMARCD1-204	ENST00000547637	HSPA1A	P0DMV8	641 aa	Known RBP	30.29	■■■□□ 2.44

Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms